Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0006640

Physical Location & Seq

Genomic Coordinates Reverse (-)

18940408 .. 18944400

Gene Structure 3993 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g14060.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1380 bp

ATGGGGAAGAAGACAAAGAAGCCAGGTAAAGGAAAAGAGAAGACGGAGAAGAAAACTGCGAAGGCTGATGAGAAGAGAGCTCGCAGAGAGACCAAGAAGCTCTCTCCCGAGGACGACATCGATGCCATTTTGTCGAGTATACAAAAAGAAGAAGCTAAGAAGAAGGAAGTCCATGTAGAGGAAAATGTCCCGGCTCCATCTCCACGGTCCAACTGCACGACGTTTGTGTATGGTGATCTTTACCGCTATGATGTTGAAAAGCAGGACTGGAAGTTAATTTCGAGCCCCAATAGTCCACCTCCTCGCAGTGCGCACCAGGCGGTCACTTGGAAGAACTATCTCTACATCTTTGGTGGTGAGTTTACTTCCCCAAACCAAGAGAGGTTCCATCACTACAAGGACTTTTGGATGTTGGACCTCAAAACAAATCAATGGGAACTACTAAATTTAAAAGGGAGTCCAAGTCCACGCTCAGGTCATCGAATGGTACTGTACAAGCACAAGATTATTGTTTTTGGAGGCTTTTATGACACGCTTAGAGAAGTGAGGTATCACAATGATCTATTTGTATTTGACCTGGATCAGTTCAAGTGGCAAGAAATAACTCCTAGGCCTGGTTCCTTGTGGCCAAGTGCCCGAAGTGGTTTTCAGTTTTTTGTGTACCAAGATGAAATTTTCTTATATGGTGGCTATTCCAAAGAAGTTTCATCTGATAAAACTGGCTCCGAGAAGGGAATTGTTCATTCAGACTTGTGGTCCCTTGATCCTAGGACTTGGGAATGGAACAAGGTGAAGAAAAGTGGGATGCCTCCTGGACCTCGTGCTGGGTTCTCTATGTGTGTTCATAAGAAGCGAGCTTTGCTCTTCGGGGGTGTGGTGGACATGGAAGTTGGAGCTGATGTAATGATGAGCTTGTTCTTGGACGAACTGTATGGCTTCCAATTGGACAACCATCGGTGGTACCCATTAGAGCTACGGAAAGCGAAGTCAACAAAAGATAAGCCTAAAAAGAGTTCTGGACGAAAGCGTAAAAATGATGATAAGATAAATTCAATTGAGCCAGAGGAATGTGCGACAAATGAAAAAGATGAGAACAATGAGATTGATGAAGAAGCAGATGACTTTGAAAGCACAGTTGATGGTATATCACATCAAATGGCTAAAACCATTACTGTTGGTAATGATGGGTTAGCTGAAGAATCTGATGGGAAGATAAATGAATCTAGTGCTAATTTGGATTCACAAGATTCTGATTTGCCAGAGGTAGTGAAGCCTTGTGGACGTATCAATTCTTGCATGGTTGTTGGAAGAGATACATTATATGTTTATGGGGGAATGATGGAGATTAAATGGATCGGATCGAGAAATCACACTCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4110 Kelch_3 Kelch_4 Kelch_5

Protein Analysis

460

Amino Acids

52.68

Weight (kDa)

7.19

Isoelectric Point (pI)

47.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006640)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50310
fragaria_vesca	FvH4_5g07300 FvH4_5g07300 FvH4_5g07300 FvH4_5g07300
malus_domestica	MD06G1157400.v1.1 MD14G1164000.v1.1
prunus_persica	Prupe.5G157400_v2.0.a1 Prupe.5G157400_v2.0.a1
pyrus_communis	pycom06g14060 pycom14g13670
rosa_chinensis	RchiOBHm_Chr6g0266051 RchiOBHm_Chr7g0191331 RchiOBHm_Chr7g0231611
rosa_laevigata	RLG00000004465
rosa_multiflora	Rmu_sc0004860.1_g000004 Rmu_sc0011522.1_g000001
rosa_roxburghii	Rroxscaffold_3G00229050 Rroxscaffold_3G00263930
rosa_rugosa	Rorug06G0510000
rosa_samantha	Rh4DG264900 Rh7AG117300 Rh7BG119200 Rh7CG122300 Rh7DG120400
rosa_wichuraiana	Rw1G001960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	312
Acc65I	GGTACC	1 cut(s)	960
AccB1I	GGYRCC	1 cut(s)	960
AccI	GTMKAC	1 cut(s)	139
AciI	CCGC	2 cut(s)	244, 320
AclWI	GGATC	4 cut(s)	588, 758, 1361, 1366
AcoI	YGGCCR	1 cut(s)	626
AcsI	RAATTY	3 cut(s)	445, 672, 1048
AcuI	CTGAAG	1 cut(s)	1215
AfaI	GTAC	4 cut(s)	489, 494, 662, 962
AfiI	CCNNNNNNNGG	5 cut(s)	29, 178, 473, 614, 824
AgsI	TTSAA	4 cut(s)	257, 589, 1053, 1127
AhdI	GACNNNNNGTC	1 cut(s)	754
AjnI	CCWGG	5 cut(s)	22, 315, 576, 613, 811
AluBI	AGCT	8 cut(s)	80, 100, 155, 857, 896, 912, 973, 1193
AluI	AGCT	8 cut(s)	80, 100, 155, 857, 896, 912, 973, 1193
Alw21I	GWGCWC	1 cut(s)	82
Alw26I	GTCTC	1 cut(s)	83
AlwI	GGATC	4 cut(s)	588, 758, 1361, 1366
Ama87I	CYCGRG	1 cut(s)	107
AoxI	GGCC	2 cut(s)	611, 626
ApoI	RAATTY	3 cut(s)	445, 672, 1048
Asp718I	GGTACC	1 cut(s)	960
AspA2I	CCTAGG	2 cut(s)	608, 767
AspLEI	GCGC	1 cut(s)	313
AspS9I	GGNCC	4 cut(s)	207, 415, 756, 815
AsuC2I	CCSGG	1 cut(s)	191
AsuHPI	GGTGA	3 cut(s)	245, 368, 802
AvaI	CYCGRG	1 cut(s)	107
AvaII	GGWCC	4 cut(s)	207, 415, 756, 815
AvrII	CCTAGG	2 cut(s)	608, 767
BaeGI	GKGCMC	1 cut(s)	637
BalI	TGGCCA	1 cut(s)	628
BanI	GGYRCC	1 cut(s)	960
BanII	GRGCYC	2 cut(s)	82, 287
BauI	CACGAG	1 cut(s)	819
BbsI	GAAGAC	2 cut(s)	17, 47
Bbv12I	GWGCWC	1 cut(s)	82
BccI	CCATC	7 cut(s)	205, 396, 960, 1133, 1178, 1199, 1333
BcgI	CGANNNNNNTGC	2 cut(s)	104, 138
BciT130I	CCWGG	5 cut(s)	24, 317, 578, 615, 813
BcnI	CCSGG	1 cut(s)	191
BcoDI	GTCTC	1 cut(s)	83
BfaI	CTAG	3 cut(s)	609, 768, 1224
BlnI	CCTAGG	2 cut(s)	608, 767
Bme1390I	CCNGG	6 cut(s)	24, 191, 317, 578, 615, 813
Bme18I	GGWCC	4 cut(s)	207, 415, 756, 815
BmeRI	GACNNNNNGTC	1 cut(s)	754
BmeT110I	CYCGRG	1 cut(s)	107
BmgT120I	GGNCC	4 cut(s)	207, 415, 756, 815
BmiI	GGNNCC	6 cut(s)	195, 386, 619, 724, 758, 962
BmrFI	CCNGG	6 cut(s)	24, 191, 317, 578, 615, 813
BmsI	GCATC	2 cut(s)	112, 795
BpiI	GAAGAC	2 cut(s)	17, 47
BplI	GAGNNNNNCTC	2 cut(s)	846, 878
Bpu10I	CCTNAGC	1 cut(s)	472
BpuMI	CCSGG	1 cut(s)	191
Bsa29I	ATCGAT	1 cut(s)	120
BsaI	GGTCTC	1 cut(s)	83
BsaJI	CCNNGG	4 cut(s)	108, 203, 608, 767
BsaXI	ACNNNNNCTCC	4 cut(s)	448, 478, 885, 915
Bsc4I	CCNNNNNNNGG	5 cut(s)	29, 178, 473, 614, 824
Bse1I	ACTGG	2 cut(s)	272, 724
BseBI	CCWGG	5 cut(s)	24, 317, 578, 615, 813
BseCI	ATCGAT	1 cut(s)	120
BseDI	CCNNGG	4 cut(s)	108, 203, 608, 767
BseGI	GGATG	2 cut(s)	414, 810
BseLI	CCNNNNNNNGG	5 cut(s)	29, 178, 473, 614, 824
BseMII	CTCAG	1 cut(s)	486
BseNI	ACTGG	2 cut(s)	272, 724
BseRI	GAGGAG	1 cut(s)	291
BseSI	GKGCMC	1 cut(s)	637
BseYI	CCCAGC	1 cut(s)	824
BsgI	GTGCAG	1 cut(s)	199
BshFI	GGCC	2 cut(s)	613, 628
BshNI	GGYRCC	1 cut(s)	960
BshVI	ATCGAT	1 cut(s)	120
BsiHKAI	GWGCWC	1 cut(s)	82
BsiHKCI	CYCGRG	1 cut(s)	107
BsiSI	CCGG	1 cut(s)	191
BslFI	GGGAC	2 cut(s)	173, 742
BslI	CCNNNNNNNGG	5 cut(s)	29, 178, 473, 614, 824
BsmAI	GTCTC	1 cut(s)	83
BsmFI	GGGAC	2 cut(s)	173, 742
BsnI	GGCC	2 cut(s)	613, 628
Bso31I	GGTCTC	1 cut(s)	83
BsoBI	CYCGRG	1 cut(s)	107
Bsp1286I	GDGCHC	3 cut(s)	82, 287, 637
Bsp1407I	TGTACA	1 cut(s)	492
Bsp143I	GATC	6 cut(s)	235, 559, 580, 763, 1353, 1358
BspACI	CCGC	2 cut(s)	244, 320
BspANI	GGCC	2 cut(s)	613, 628
BspCNI	CTCAG	1 cut(s)	485
BspDI	ATCGAT	1 cut(s)	120
BspLI	GGNNCC	6 cut(s)	195, 386, 619, 724, 758, 962
BspPI	GGATC	4 cut(s)	588, 758, 1361, 1366
BspQI	GCTCTTC	1 cut(s)	869
BspT107I	GGYRCC	1 cut(s)	960
BspTNI	GGTCTC	1 cut(s)	83
BsrGI	TGTACA	1 cut(s)	492
BsrI	ACTGG	2 cut(s)	272, 724
BssECI	CCNNGG	4 cut(s)	108, 203, 608, 767
BssMI	GATC	6 cut(s)	235, 559, 580, 763, 1353, 1358
BssNAI	GTATAC	1 cut(s)	140
BssSI	CACGAG	1 cut(s)	819
BssT1I	CCWWGG	2 cut(s)	608, 767
Bst1107I	GTATAC	1 cut(s)	140
Bst2BI	CACGAG	1 cut(s)	819
Bst2UI	CCWGG	5 cut(s)	24, 317, 578, 615, 813
Bst4CI	ACNGT	5 cut(s)	207, 492, 930, 1135, 1174
Bst6I	CTCTTC	3 cut(s)	68, 869, 1303
BstAUI	TGTACA	1 cut(s)	492
BstC8I	GCNNGC	2 cut(s)	82, 855
BstDEI	CTNAG	3 cut(s)	156, 472, 536
BstDSI	CCRYGG	1 cut(s)	203
BstF5I	GGATG	2 cut(s)	414, 810
BstHHI	GCGC	1 cut(s)	313
BstKTI	GATC	6 cut(s)	238, 562, 583, 766, 1356, 1361
BstMAI	GTCTC	1 cut(s)	83
BstMBI	GATC	6 cut(s)	235, 559, 580, 763, 1353, 1358
BstMWI	GCNNNNNNNGC	2 cut(s)	317, 859
BstNI	CCWGG	5 cut(s)	24, 317, 578, 615, 813
BstSCI	CCNGG	6 cut(s)	22, 189, 315, 576, 613, 811
BstSLI	GKGCMC	1 cut(s)	637
BstV2I	GAAGAC	2 cut(s)	17, 47
BstZ17I	GTATAC	1 cut(s)	140
Bsu15I	ATCGAT	1 cut(s)	120
BsuRI	GGCC	2 cut(s)	613, 628
BsuTUI	ATCGAT	1 cut(s)	120
BtgI	CCRYGG	1 cut(s)	203
BtsCI	GGATG	2 cut(s)	414, 810
BtsI	GCAGTG	1 cut(s)	313
BtsIMutI	CAGTG	1 cut(s)	313
Cac8I	GCNNGC	2 cut(s)	82, 855
CfoI	GCGC	1 cut(s)	313
Cfr13I	GGNCC	4 cut(s)	207, 415, 756, 815
ClaI	ATCGAT	1 cut(s)	120
Csp6I	GTAC	4 cut(s)	488, 493, 661, 961
CviAII	CATG	3 cut(s)	173, 883, 1297
CviQI	GTAC	4 cut(s)	488, 493, 661, 961
DdeI	CTNAG	3 cut(s)	156, 472, 536
DpnI	GATC	6 cut(s)	237, 561, 582, 765, 1355, 1360
DpnII	GATC	6 cut(s)	235, 559, 580, 763, 1353, 1358
DraI	TTTAAA	1 cut(s)	450
DriI	GACNNNNNGTC	1 cut(s)	754
EaeI	YGGCCR	1 cut(s)	626
Eam1104I	CTCTTC	3 cut(s)	68, 869, 1303
Eam1105I	GACNNNNNGTC	1 cut(s)	754
EarI	CTCTTC	3 cut(s)	68, 869, 1303
Ecl136II	GAGCTC	1 cut(s)	80
Eco130I	CCWWGG	2 cut(s)	608, 767
Eco147I	AGGCCT	1 cut(s)	613
Eco24I	GRGCYC	2 cut(s)	82, 287
Eco31I	GGTCTC	1 cut(s)	83
Eco47I	GGWCC	4 cut(s)	207, 415, 756, 815
Eco53kI	GAGCTC	1 cut(s)	80
Eco57I	CTGAAG	1 cut(s)	1215
Eco88I	CYCGRG	1 cut(s)	107
EcoICRI	GAGCTC	1 cut(s)	80
EcoRII	CCWGG	5 cut(s)	22, 315, 576, 613, 811
EcoT14I	CCWWGG	2 cut(s)	608, 767
EcoT38I	GRGCYC	2 cut(s)	82, 287
ErhI	CCWWGG	2 cut(s)	608, 767
FaeI	CATG	3 cut(s)	176, 886, 1300
FaqI	GGGAC	2 cut(s)	173, 742
FatI	CATG	3 cut(s)	172, 882, 1296
FblI	GTMKAC	1 cut(s)	139
FokI	GGATG	2 cut(s)	421, 817
FriOI	GRGCYC	2 cut(s)	82, 287
FspAI	RTGCGCAY	1 cut(s)	312
FspBI	CTAG	3 cut(s)	609, 768, 1224
FspI	TGCGCA	1 cut(s)	312
GlaI	GCGC	1 cut(s)	312
GsaI	CCCAGC	1 cut(s)	828
HaeIII	GGCC	2 cut(s)	613, 628
HapII	CCGG	1 cut(s)	191
HhaI	GCGC	1 cut(s)	313
Hin1II	CATG	3 cut(s)	176, 886, 1300
Hin6I	GCGC	1 cut(s)	311
HinP1I	GCGC	1 cut(s)	311
HincII	GTYRAC	1 cut(s)	990
HindII	GTYRAC	1 cut(s)	990
HinfI	GANTC	5 cut(s)	457, 1199, 1220, 1238, 1247
HpaII	CCGG	1 cut(s)	191
HphI	GGTGA	3 cut(s)	245, 368, 802
Hpy166II	GTNNAC	8 cut(s)	140, 296, 363, 467, 661, 880, 990, 1280
Hpy188I	TCNGA	6 cut(s)	712, 727, 748, 1204, 1252, 1358
Hpy188III	TCNNGA	3 cut(s)	107, 1017, 1362
Hpy8I	GTNNAC	8 cut(s)	140, 296, 363, 467, 661, 880, 990, 1280
Hpy99I	CGWCG	1 cut(s)	223
HpyAV	CCTTC	3 cut(s)	55, 157, 724
HpyCH4III	ACNGT	5 cut(s)	207, 492, 930, 1135, 1174
HpyCH4IV	ACGT	2 cut(s)	221, 1282
HpyCH4V	TGCA	2 cut(s)	216, 1296
HpyF10VI	GCNNNNNNNGC	2 cut(s)	317, 859
HpyF3I	CTNAG	3 cut(s)	156, 472, 536
HpySE526I	ACGT	2 cut(s)	221, 1282
Hsp92II	CATG	3 cut(s)	176, 886, 1300
HspAI	GCGC	1 cut(s)	311
KpnI	GGTACC	1 cut(s)	964
Kzo9I	GATC	6 cut(s)	235, 559, 580, 763, 1353, 1358
LguI	GCTCTTC	1 cut(s)	869
LmnI	GCTCC	3 cut(s)	199, 728, 893
LweI	GCATC	2 cut(s)	112, 795
MaeI	CTAG	3 cut(s)	609, 768, 1224
MaeII	ACGT	2 cut(s)	221, 1282
MaeIII	GTNAC	1 cut(s)	322
MalI	GATC	6 cut(s)	237, 561, 582, 765, 1355, 1360
MboI	GATC	6 cut(s)	235, 559, 580, 763, 1353, 1358
MfeI	CAATTG	2 cut(s)	941, 1053
MhlI	GDGCHC	3 cut(s)	82, 287, 637
MlsI	TGGCCA	1 cut(s)	628
MluCI	AATT	9 cut(s)	276, 445, 672, 735, 941, 1048, 1053, 1231, 1288
MluNI	TGGCCA	1 cut(s)	628
MlyI	GAGTC	1 cut(s)	466
MmeI	TCCRAC	4 cut(s)	234, 393, 871, 1285
Mox20I	TGGCCA	1 cut(s)	628
MscI	TGGCCA	1 cut(s)	628
MseI	TTAA	3 cut(s)	275, 449, 1347
Msp20I	TGGCCA	1 cut(s)	628
MspI	CCGG	1 cut(s)	191
MspR9I	CCNGG	6 cut(s)	24, 191, 317, 578, 615, 813
MunI	CAATTG	2 cut(s)	941, 1053
MvaI	CCWGG	5 cut(s)	24, 317, 578, 615, 813
MwoI	GCNNNNNNNGC	2 cut(s)	317, 859
NciI	CCSGG	1 cut(s)	191
NdeII	GATC	6 cut(s)	235, 559, 580, 763, 1353, 1358
NlaIII	CATG	3 cut(s)	176, 886, 1300
NlaIV	GGNNCC	6 cut(s)	195, 386, 619, 724, 758, 962
NmuCI	GTSAC	1 cut(s)	322
NsbI	TGCGCA	1 cut(s)	312
PceI	AGGCCT	1 cut(s)	613
PciSI	GCTCTTC	1 cut(s)	869
PfeI	GAWTC	4 cut(s)	1199, 1220, 1238, 1247
PfoI	TCCNGGA	1 cut(s)	811
PleI	GAGTC	1 cut(s)	465
PpsI	GAGTC	1 cut(s)	465
Psp124BI	GAGCTC	1 cut(s)	82
Psp6I	CCWGG	5 cut(s)	22, 315, 576, 613, 811
PspFI	CCCAGC	1 cut(s)	824
PspGI	CCWGG	5 cut(s)	22, 315, 576, 613, 811
PspN4I	GGNNCC	6 cut(s)	195, 386, 619, 724, 758, 962
PspPI	GGNCC	4 cut(s)	207, 415, 756, 815
PsrI	GAACNNNNNNTAC	2 cut(s)	326, 358
RsaI	GTAC	4 cut(s)	489, 494, 662, 962
RsaNI	GTAC	4 cut(s)	488, 493, 661, 961
SacI	GAGCTC	1 cut(s)	82
SapI	GCTCTTC	1 cut(s)	869
SaqAI	TTAA	3 cut(s)	275, 449, 1347
Sau3AI	GATC	6 cut(s)	235, 559, 580, 763, 1353, 1358
Sau96I	GGNCC	4 cut(s)	207, 415, 756, 815
SchI	GAGTC	1 cut(s)	466
ScrFI	CCNGG	6 cut(s)	24, 191, 317, 578, 615, 813
SduI	GDGCHC	3 cut(s)	82, 287, 637
SfaNI	GCATC	2 cut(s)	112, 795
SinI	GGWCC	4 cut(s)	207, 415, 756, 815
Sse9I	AATT	9 cut(s)	276, 445, 672, 735, 941, 1048, 1053, 1231, 1288
SseBI	AGGCCT	1 cut(s)	613
SsiI	CCGC	2 cut(s)	244, 320
SspMI	CTAG	3 cut(s)	609, 768, 1224
SstI	GAGCTC	1 cut(s)	82
StuI	AGGCCT	1 cut(s)	613
StyD4I	CCNGG	6 cut(s)	22, 189, 315, 576, 613, 811
StyI	CCWWGG	2 cut(s)	608, 767
TaaI	ACNGT	5 cut(s)	207, 492, 930, 1135, 1174
TaiI	ACGT	2 cut(s)	224, 1285
TaqI	TCGA	6 cut(s)	120, 134, 281, 481, 1361, 1375
TasI	AATT	9 cut(s)	276, 445, 672, 735, 941, 1048, 1053, 1231, 1288
TatI	WGTACW	1 cut(s)	492
TfiI	GAWTC	4 cut(s)	1199, 1220, 1238, 1247
Tru1I	TTAA	3 cut(s)	275, 449, 1347
Tru9I	TTAA	3 cut(s)	275, 449, 1347
TscAI	CASTG	1 cut(s)	313
TseFI	GTSAC	1 cut(s)	322
Tsp45I	GTSAC	1 cut(s)	322
TspDTI	ATGAA	7 cut(s)	684, 696, 731, 833, 1095, 1122, 1233
TspGWI	ACGGA	2 cut(s)	59, 991
TspRI	CASTG	1 cut(s)	313
VpaK11BI	GGWCC	4 cut(s)	207, 415, 756, 815
XapI	RAATTY	3 cut(s)	445, 672, 1048
XmaJI	CCTAGG	2 cut(s)	608, 767
XmiI	GTMKAC	1 cut(s)	139
XspI	CTAG	3 cut(s)	609, 768, 1224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.