Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0006640

Physical Location & Seq

Genomic Coordinates Reverse (-)

16520973 .. 16522861

Gene Structure 1889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g13670.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGATACACAAGATTCTGATTTGCCAGAGGTAGTGAAGCCCTGTGGACGTATCAATTCTTGCATGGTTGTTGGAAGAGATACATTATATGTTTACGGGGGAATGATGGAGGTTAAAGATCGAGAAATTACACTCAATGATTTGTATTCTCTAAATCTTAGCAAACTTGACGAGTGGAAGTGCATCATACCGGCAACAGAAACTGAATGGGTGGAGGGTTCCAAGGACGAAGATGAGGATGAAGATGACGATGATGATAGTGAAGATGAAGGTGATGAAGATAGTAACAGTGATGAGACCGATGATGATAATGACGAAGAGAGTGGGAAAGATGGATCGATTCAGATGGGGGATGCTGTTGCTTTAATCAAGGGTGAGGGAAAGAGTCTCCGTAGGAAAGAGAAACGGGCCAGAATTGAGCAGATCAGAGCCAGTCTTGGCCTTTCAGATTCGCAAAGAACCCCAACGCCTGGTGAAACTTTGAGAGAATTCTACAAACGTACAAATATGTACTGGCAAATGGCGGCACACGAACATACTCAACACACTGGAAAGGAGCTCCGTAAGGACGGTTTTGATCTTGCTGAAGCACGATACAGAGAGCTTAAACCAATTCTCGATGAGTTGGCCATATTAGAGGCAGAACAGAAGGCTGAACAAAAAAAAAGGCAAGAAGAAAAGATAAGCGGTTCGCGATGGTGCACACAGTACTGCTATATCGAGTGTATTTTGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4110 Kelch_3 Kelch_4 Kelch_5

Protein Analysis

246

Amino Acids

28.18

Weight (kDa)

4.49

Isoelectric Point (pI)

45.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006640)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50310
fragaria_vesca	FvH4_5g07300 FvH4_5g07300 FvH4_5g07300 FvH4_5g07300
malus_domestica	MD06G1157400.v1.1 MD14G1164000.v1.1
prunus_persica	Prupe.5G157400_v2.0.a1 Prupe.5G157400_v2.0.a1
pyrus_communis	pycom06g14060 pycom14g13670
rosa_chinensis	RchiOBHm_Chr6g0266051 RchiOBHm_Chr7g0191331 RchiOBHm_Chr7g0231611
rosa_laevigata	RLG00000004465
rosa_multiflora	Rmu_sc0004860.1_g000004 Rmu_sc0011522.1_g000001
rosa_roxburghii	Rroxscaffold_3G00229050 Rroxscaffold_3G00263930
rosa_rugosa	Rorug06G0510000
rosa_samantha	Rh4DG264900 Rh7AG117300 Rh7BG119200 Rh7CG122300 Rh7DG120400
rosa_wichuraiana	Rw1G001960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	470
AccII	CGCG	1 cut(s)	694
AciI	CCGC	2 cut(s)	524, 687
AclWI	GGATC	1 cut(s)	343
AcoI	YGGCCR	1 cut(s)	627
AcsI	RAATTY	1 cut(s)	488
AcuI	CTGAAG	1 cut(s)	606
AfaI	GTAC	3 cut(s)	502, 512, 710
AfiI	CCNNNNNNNGG	1 cut(s)	470
AjnI	CCWGG	1 cut(s)	469
AluBI	AGCT	2 cut(s)	559, 604
AluI	AGCT	2 cut(s)	559, 604
Alw21I	GWGCWC	2 cut(s)	561, 704
Alw26I	GTCTC	2 cut(s)	290, 392
Alw44I	GTGCAC	1 cut(s)	700
AlwI	GGATC	1 cut(s)	343
AlwNI	CAGNNNCTG	1 cut(s)	203
AoxI	GGCC	3 cut(s)	408, 439, 627
ApaLI	GTGCAC	1 cut(s)	700
ApoI	RAATTY	1 cut(s)	488
AspS9I	GGNCC	1 cut(s)	408
AsuHPI	GGTGA	3 cut(s)	284, 386, 485
BaeGI	GKGCMC	1 cut(s)	704
BalI	TGGCCA	1 cut(s)	629
BanII	GRGCYC	1 cut(s)	561
Bbv12I	GWGCWC	2 cut(s)	561, 704
BccI	CCATC	4 cut(s)	100, 326, 340, 690
BciT130I	CCWGG	1 cut(s)	471
BcoDI	GTCTC	2 cut(s)	290, 392
BisI	GCNGC	1 cut(s)	525
BlsI	GCNGC	1 cut(s)	526
BmcAI	AGTACT	1 cut(s)	710
Bme1390I	CCNGG	1 cut(s)	471
BmgT120I	GGNCC	1 cut(s)	408
BmiI	GGNNCC	1 cut(s)	220
BmrFI	CCNGG	1 cut(s)	471
BmsI	GCATC	2 cut(s)	192, 343
Bsa29I	ATCGAT	1 cut(s)	338
BsaI	GGTCTC	1 cut(s)	290
BsaJI	CCNNGG	1 cut(s)	222
Bsc4I	CCNNNNNNNGG	1 cut(s)	470
Bse118I	RCCGGY	1 cut(s)	190
Bse1I	ACTGG	3 cut(s)	432, 518, 553
BseBI	CCWGG	1 cut(s)	471
BseCI	ATCGAT	1 cut(s)	338
BseDI	CCNNGG	1 cut(s)	222
BseGI	GGATG	2 cut(s)	244, 358
BseLI	CCNNNNNNNGG	1 cut(s)	470
BseNI	ACTGG	3 cut(s)	432, 518, 553
BseSI	GKGCMC	1 cut(s)	704
Bsh1236I	CGCG	1 cut(s)	694
BshFI	GGCC	3 cut(s)	410, 441, 629
BshVI	ATCGAT	1 cut(s)	338
BsiHKAI	GWGCWC	2 cut(s)	561, 704
BsiSI	CCGG	1 cut(s)	191
BslI	CCNNNNNNNGG	1 cut(s)	470
BsmAI	GTCTC	2 cut(s)	290, 392
BsnI	GGCC	3 cut(s)	410, 441, 629
Bso31I	GGTCTC	1 cut(s)	290
Bsp1286I	GDGCHC	2 cut(s)	561, 704
Bsp143I	GATC	4 cut(s)	118, 335, 423, 577
Bsp68I	TCGCGA	1 cut(s)	694
BspACI	CCGC	2 cut(s)	524, 687
BspANI	GGCC	3 cut(s)	410, 441, 629
BspDI	ATCGAT	1 cut(s)	338
BspFNI	CGCG	1 cut(s)	694
BspLI	GGNNCC	1 cut(s)	220
BspPI	GGATC	1 cut(s)	343
BspTNI	GGTCTC	1 cut(s)	290
BsrFI	RCCGGY	1 cut(s)	190
BsrI	ACTGG	3 cut(s)	432, 518, 553
BssAI	RCCGGY	1 cut(s)	190
BssECI	CCNNGG	1 cut(s)	222
BssMI	GATC	4 cut(s)	118, 335, 423, 577
BssT1I	CCWWGG	1 cut(s)	222
Bst2UI	CCWGG	1 cut(s)	471
Bst4CI	ACNGT	3 cut(s)	290, 572, 708
Bst6I	CTCTTC	2 cut(s)	70, 312
BstDEI	CTNAG	1 cut(s)	158
BstF5I	GGATG	2 cut(s)	244, 358
BstFNI	CGCG	1 cut(s)	694
BstKTI	GATC	4 cut(s)	121, 338, 426, 580
BstMAI	GTCTC	2 cut(s)	290, 392
BstMBI	GATC	4 cut(s)	118, 335, 423, 577
BstNI	CCWGG	1 cut(s)	471
BstSCI	CCNGG	1 cut(s)	469
BstSLI	GKGCMC	1 cut(s)	704
BstUI	CGCG	1 cut(s)	694
Bsu15I	ATCGAT	1 cut(s)	338
BsuRI	GGCC	3 cut(s)	410, 441, 629
BsuTUI	ATCGAT	1 cut(s)	338
BtgZI	GCGATG	1 cut(s)	709
BtsCI	GGATG	2 cut(s)	244, 358
BtsIMutI	CAGTG	2 cut(s)	295, 546
BtuMI	TCGCGA	1 cut(s)	694
CaiI	CAGNNNCTG	1 cut(s)	203
Cfr10I	RCCGGY	1 cut(s)	190
Cfr13I	GGNCC	1 cut(s)	408
ClaI	ATCGAT	1 cut(s)	338
Csp6I	GTAC	3 cut(s)	501, 511, 709
CviAII	CATG	1 cut(s)	64
CviJI	RGCY	8 cut(s)	40, 410, 431, 441, 559, 604, 629, 653
CviKI_1	RGCY	8 cut(s)	40, 410, 431, 441, 559, 604, 629, 653
CviQI	GTAC	3 cut(s)	501, 511, 709
DdeI	CTNAG	1 cut(s)	158
DpnI	GATC	4 cut(s)	120, 337, 425, 579
DpnII	GATC	4 cut(s)	118, 335, 423, 577
EaeI	YGGCCR	1 cut(s)	627
Eam1104I	CTCTTC	2 cut(s)	70, 312
EarI	CTCTTC	2 cut(s)	70, 312
Ecl136II	GAGCTC	1 cut(s)	559
Eco130I	CCWWGG	1 cut(s)	222
Eco24I	GRGCYC	1 cut(s)	561
Eco31I	GGTCTC	1 cut(s)	290
Eco53kI	GAGCTC	1 cut(s)	559
Eco57I	CTGAAG	1 cut(s)	606
EcoICRI	GAGCTC	1 cut(s)	559
EcoRI	GAATTC	1 cut(s)	488
EcoRII	CCWGG	1 cut(s)	469
EcoT14I	CCWWGG	1 cut(s)	222
EcoT38I	GRGCYC	1 cut(s)	561
ErhI	CCWWGG	1 cut(s)	222
FaeI	CATG	1 cut(s)	67
FaiI	YATR	8 cut(s)	65, 88, 90, 188, 509, 537, 632, 717
FatI	CATG	1 cut(s)	63
Fnu4HI	GCNGC	1 cut(s)	525
FokI	GGATG	2 cut(s)	251, 365
FriOI	GRGCYC	1 cut(s)	561
Fsp4HI	GCNGC	1 cut(s)	525
GluI	GCNGC	1 cut(s)	525
HaeIII	GGCC	3 cut(s)	410, 441, 629
HapII	CCGG	1 cut(s)	191
Hin1II	CATG	1 cut(s)	67
HinfI	GANTC	4 cut(s)	14, 340, 385, 449
HpaII	CCGG	1 cut(s)	191
HphI	GGTGA	3 cut(s)	284, 386, 485
Hpy166II	GTNNAC	3 cut(s)	47, 94, 702
Hpy188I	TCNGA	4 cut(s)	19, 345, 428, 448
Hpy188III	TCNNGA	3 cut(s)	122, 617, 693
Hpy8I	GTNNAC	3 cut(s)	47, 94, 702
HpyAV	CCTTC	2 cut(s)	263, 643
HpyCH4III	ACNGT	3 cut(s)	290, 572, 708
HpyCH4IV	ACGT	2 cut(s)	49, 499
HpyCH4V	TGCA	3 cut(s)	63, 183, 702
HpyF3I	CTNAG	1 cut(s)	158
HpySE526I	ACGT	2 cut(s)	49, 499
Hsp92II	CATG	1 cut(s)	67
Kzo9I	GATC	4 cut(s)	118, 335, 423, 577
LmnI	GCTCC	2 cut(s)	556, 564
LpnPI	CCDG	9 cut(s)	39, 55, 204, 424, 445, 456, 483, 499, 534
LweI	GCATC	2 cut(s)	192, 343
MaeII	ACGT	2 cut(s)	49, 499
MaeIII	GTNAC	1 cut(s)	284
MalI	GATC	4 cut(s)	120, 337, 425, 579
MboI	GATC	4 cut(s)	118, 335, 423, 577
MboII	GAAGA	7 cut(s)	87, 242, 254, 275, 290, 329, 686
MhlI	GDGCHC	2 cut(s)	561, 704
MlsI	TGGCCA	1 cut(s)	629
MluCI	AATT	5 cut(s)	55, 126, 414, 488, 612
MluNI	TGGCCA	1 cut(s)	629
MlyI	GAGTC	1 cut(s)	394
MmeI	TCCRAC	1 cut(s)	52
MnlI	CCTC	6 cut(s)	22, 103, 208, 229, 370, 631
Mox20I	TGGCCA	1 cut(s)	629
MscI	TGGCCA	1 cut(s)	629
MseI	TTAA	3 cut(s)	114, 365, 606
Msp20I	TGGCCA	1 cut(s)	629
MspI	CCGG	1 cut(s)	191
MspR9I	CCNGG	1 cut(s)	471
MvaI	CCWGG	1 cut(s)	471
MvnI	CGCG	1 cut(s)	694
NdeII	GATC	4 cut(s)	118, 335, 423, 577
NlaIII	CATG	1 cut(s)	67
NlaIV	GGNNCC	1 cut(s)	220
NruI	TCGCGA	1 cut(s)	694
PfeI	GAWTC	3 cut(s)	14, 340, 449
PflMI	CCANNNNNTGG	1 cut(s)	470
PkrI	GCNGC	1 cut(s)	526
PleI	GAGTC	1 cut(s)	393
PpsI	GAGTC	1 cut(s)	393
Psp124BI	GAGCTC	1 cut(s)	561
Psp6I	CCWGG	1 cut(s)	469
PspGI	CCWGG	1 cut(s)	469
PspN4I	GGNNCC	1 cut(s)	220
PspPI	GGNCC	1 cut(s)	408
PstNI	CAGNNNCTG	1 cut(s)	203
RruI	TCGCGA	1 cut(s)	694
RsaI	GTAC	3 cut(s)	502, 512, 710
RsaNI	GTAC	3 cut(s)	501, 511, 709
SacI	GAGCTC	1 cut(s)	561
SaqAI	TTAA	3 cut(s)	114, 365, 606
SatI	GCNGC	1 cut(s)	525
Sau3AI	GATC	4 cut(s)	118, 335, 423, 577
Sau96I	GGNCC	1 cut(s)	408
ScaI	AGTACT	1 cut(s)	710
SchI	GAGTC	1 cut(s)	394
ScrFI	CCNGG	1 cut(s)	471
SduI	GDGCHC	2 cut(s)	561, 704
SetI	ASST	7 cut(s)	33, 52, 114, 274, 502, 561, 606
SfaNI	GCATC	2 cut(s)	192, 343
Sse9I	AATT	5 cut(s)	55, 126, 414, 488, 612
SsiI	CCGC	2 cut(s)	524, 687
SstI	GAGCTC	1 cut(s)	561
StyD4I	CCNGG	1 cut(s)	469
StyI	CCWWGG	1 cut(s)	222
TaaI	ACNGT	3 cut(s)	290, 572, 708
TaiI	ACGT	2 cut(s)	52, 502
TaqI	TCGA	4 cut(s)	121, 338, 618, 720
TaqII	GACCGA	1 cut(s)	314
TasI	AATT	5 cut(s)	55, 126, 414, 488, 612
TatI	WGTACW	2 cut(s)	510, 708
TauI	GCSGC	1 cut(s)	527
TfiI	GAWTC	3 cut(s)	14, 340, 449
Tru1I	TTAA	3 cut(s)	114, 365, 606
Tru9I	TTAA	3 cut(s)	114, 365, 606
TscAI	CASTG	2 cut(s)	295, 553
TspDTI	ATGAA	3 cut(s)	255, 282, 291
TspGWI	ACGGA	2 cut(s)	380, 551
TspRI	CASTG	2 cut(s)	295, 553
Van91I	CCANNNNNTGG	1 cut(s)	470
VneI	GTGCAC	1 cut(s)	700
XapI	RAATTY	1 cut(s)	488
ZrmI	AGTACT	1 cut(s)	710

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.