Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006640

Physical Location & Seq

Genomic Coordinates Forward (+)

55216859 .. 55218623

Gene Structure 1765 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20757

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGTGTTCGTGTGTGTTGAGACATTCACTTTACAACATTAGTCCAGTCTTCATCTCCATTCATTGTTTTTTTCATAGTGATGCATTATCGGTTATGTTACAGGTATTGTACAAGCACAAGATTATTGTTTTTGGCGGCTTCTATGACACTCTAAGAGAAGTGAGGTATCATAATGATCTTTATGTATTTGACCTGGACCAGTTCAAGTGGCAAGAAATAACCGCTAGGTCTGGGGCCATGTGGCCAAGTGCACGAAGTGGGTTTCAATTTTTGGTTACCAAGATGAGATCTTTCTATATGGTGGCTATTCCAAAGAAGTTTCATCTGATAAAACCGGCTCTGAGAAAGGAATTGTTCATTCAGATTTATGGTCCCTTGATCCTAGACATGGGAATGGAACAAGAAGCCATGTCATTTTTGTTGGTTGATCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4110 Kelch_3 Kelch_4 Kelch_5

Protein Analysis

144

Amino Acids

16.96

Weight (kDa)

8.79

Isoelectric Point (pI)

56.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kelch_KLHDC2_KLHL20_DRC7	PF24681	35 - 102	1.1e-08	KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_FBX42	PF13415	35 - 94	1.6e-06	FBX42, beta-propeller domain
Beta-prop_ATRN-LZTR1	PF24981	35 - 87	3.5e-06	Attractin/LZTR1 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006640)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50310
fragaria_vesca	FvH4_5g07300 FvH4_5g07300 FvH4_5g07300 FvH4_5g07300
malus_domestica	MD06G1157400.v1.1 MD14G1164000.v1.1
prunus_persica	Prupe.5G157400_v2.0.a1 Prupe.5G157400_v2.0.a1
pyrus_communis	pycom06g14060 pycom14g13670
rosa_chinensis	RchiOBHm_Chr6g0266051 RchiOBHm_Chr7g0191331 RchiOBHm_Chr7g0231611
rosa_laevigata	RLG00000004465
rosa_multiflora	Rmu_sc0004860.1_g000004 Rmu_sc0011522.1_g000001
rosa_roxburghii	Rroxscaffold_3G00229050 Rroxscaffold_3G00263930
rosa_rugosa	Rorug06G0510000
rosa_samantha	Rh4DG264900 Rh7AG117300 Rh7BG119200 Rh7CG122300 Rh7DG120400
rosa_wichuraiana	Rw1G001960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	135, 222
AclWI	GGATC	1 cut(s)	373
AcoI	YGGCCR	1 cut(s)	242
AdeI	CACNNNGTG	1 cut(s)	257
AfaI	GTAC	1 cut(s)	110
AfiI	CCNNNNNNNGG	1 cut(s)	388
AgsI	TTSAA	2 cut(s)	205, 266
AjnI	CCWGG	1 cut(s)	192
Alw21I	GWGCWC	1 cut(s)	253
Alw26I	GTCTC	1 cut(s)	13
Alw44I	GTGCAC	1 cut(s)	249
AlwI	GGATC	1 cut(s)	373
AoxI	GGCC	2 cut(s)	234, 242
ApaLI	GTGCAC	1 cut(s)	249
AspS9I	GGNCC	3 cut(s)	196, 234, 371
AvaII	GGWCC	2 cut(s)	196, 371
BaeGI	GKGCMC	1 cut(s)	253
BalI	TGGCCA	1 cut(s)	244
BbsI	GAAGAC	1 cut(s)	40
Bbv12I	GWGCWC	1 cut(s)	253
BciT130I	CCWGG	1 cut(s)	194
BclI	TGATCA	1 cut(s)	427
BcoDI	GTCTC	1 cut(s)	13
BfaI	CTAG	2 cut(s)	225, 383
BglII	AGATCT	1 cut(s)	287
BisI	GCNGC	1 cut(s)	136
BlsI	GCNGC	1 cut(s)	137
Bme1390I	CCNGG	1 cut(s)	194
Bme18I	GGWCC	2 cut(s)	196, 371
BmgT120I	GGNCC	3 cut(s)	196, 234, 371
BmiI	GGNNCC	2 cut(s)	235, 373
BmrFI	CCNGG	1 cut(s)	194
BmsI	GCATC	1 cut(s)	70
BpiI	GAAGAC	1 cut(s)	40
Bsc4I	CCNNNNNNNGG	1 cut(s)	388
Bse118I	RCCGGY	1 cut(s)	334
Bse1I	ACTGG	2 cut(s)	44, 199
BseBI	CCWGG	1 cut(s)	194
BseLI	CCNNNNNNNGG	1 cut(s)	388
BseMII	CTCAG	1 cut(s)	332
BseNI	ACTGG	2 cut(s)	44, 199
BseSI	GKGCMC	1 cut(s)	253
BshFI	GGCC	2 cut(s)	236, 244
BsiHKAI	GWGCWC	1 cut(s)	253
BsiSI	CCGG	1 cut(s)	335
BslFI	GGGAC	1 cut(s)	357
BslI	CCNNNNNNNGG	1 cut(s)	388
BsmAI	GTCTC	1 cut(s)	13
BsmFI	GGGAC	1 cut(s)	357
BsnI	GGCC	2 cut(s)	236, 244
Bsp1286I	GDGCHC	1 cut(s)	253
Bsp1407I	TGTACA	1 cut(s)	108
Bsp143I	GATC	4 cut(s)	175, 287, 378, 427
BspACI	CCGC	2 cut(s)	135, 222
BspANI	GGCC	2 cut(s)	236, 244
BspCNI	CTCAG	1 cut(s)	333
BspLI	GGNNCC	2 cut(s)	235, 373
BspPI	GGATC	1 cut(s)	373
BsrFI	RCCGGY	1 cut(s)	334
BsrGI	TGTACA	1 cut(s)	108
BsrI	ACTGG	2 cut(s)	44, 199
BssAI	RCCGGY	1 cut(s)	334
BssMI	GATC	4 cut(s)	175, 287, 378, 427
Bst2UI	CCWGG	1 cut(s)	194
BstAUI	TGTACA	1 cut(s)	108
BstDEI	CTNAG	2 cut(s)	152, 341
BstEII	GGTNACC	1 cut(s)	274
BstKTI	GATC	4 cut(s)	178, 290, 381, 430
BstMAI	GTCTC	1 cut(s)	13
BstMBI	GATC	4 cut(s)	175, 287, 378, 427
BstNI	CCWGG	1 cut(s)	194
BstPI	GGTNACC	1 cut(s)	274
BstSCI	CCNGG	1 cut(s)	192
BstSLI	GKGCMC	1 cut(s)	253
BstV2I	GAAGAC	1 cut(s)	40
BstX2I	RGATCY	1 cut(s)	287
BstYI	RGATCY	1 cut(s)	287
BsuRI	GGCC	2 cut(s)	236, 244
Cfr10I	RCCGGY	1 cut(s)	334
Cfr13I	GGNCC	3 cut(s)	196, 234, 371
Csp6I	GTAC	1 cut(s)	109
CviAII	CATG	3 cut(s)	238, 388, 409
CviJI	RGCY	6 cut(s)	138, 236, 244, 305, 338, 407
CviKI_1	RGCY	6 cut(s)	138, 236, 244, 305, 338, 407
CviQI	GTAC	1 cut(s)	109
DdeI	CTNAG	2 cut(s)	152, 341
DpnI	GATC	4 cut(s)	177, 289, 380, 429
DpnII	GATC	4 cut(s)	175, 287, 378, 427
DraIII	CACNNNGTG	1 cut(s)	257
EaeI	YGGCCR	1 cut(s)	242
Eco47I	GGWCC	2 cut(s)	196, 371
Eco91I	GGTNACC	1 cut(s)	274
EcoO65I	GGTNACC	1 cut(s)	274
EcoRII	CCWGG	1 cut(s)	192
EcoT22I	ATGCAT	1 cut(s)	85
FaeI	CATG	3 cut(s)	241, 391, 412
FaqI	GGGAC	1 cut(s)	357
FatI	CATG	3 cut(s)	237, 387, 408
FbaI	TGATCA	1 cut(s)	427
Fnu4HI	GCNGC	1 cut(s)	136
Fsp4HI	GCNGC	1 cut(s)	136
FspBI	CTAG	2 cut(s)	225, 383
GluI	GCNGC	1 cut(s)	136
HaeIII	GGCC	2 cut(s)	236, 244
HapII	CCGG	1 cut(s)	335
Hin1II	CATG	3 cut(s)	241, 391, 412
HpaII	CCGG	1 cut(s)	335
Hpy166II	GTNNAC	1 cut(s)	251
Hpy188I	TCNGA	3 cut(s)	327, 342, 363
Hpy8I	GTNNAC	1 cut(s)	251
HpyCH4V	TGCA	2 cut(s)	83, 251
HpyF3I	CTNAG	2 cut(s)	152, 341
Hsp92II	CATG	3 cut(s)	241, 391, 412
Ksp22I	TGATCA	1 cut(s)	427
Kzo9I	GATC	4 cut(s)	175, 287, 378, 427
LpnPI	CCDG	7 cut(s)	57, 86, 179, 206, 212, 216, 348
LweI	GCATC	1 cut(s)	70
MaeI	CTAG	2 cut(s)	225, 383
MaeIII	GTNAC	2 cut(s)	96, 274
MalI	GATC	4 cut(s)	177, 289, 380, 429
MboI	GATC	4 cut(s)	175, 287, 378, 427
MboII	GAAGA	1 cut(s)	40
MflI	RGATCY	1 cut(s)	287
MhlI	GDGCHC	1 cut(s)	253
MlsI	TGGCCA	1 cut(s)	244
MluCI	AATT	2 cut(s)	266, 350
MluNI	TGGCCA	1 cut(s)	244
MnlI	CCTC	1 cut(s)	156
Mox20I	TGGCCA	1 cut(s)	244
Mph1103I	ATGCAT	1 cut(s)	85
MscI	TGGCCA	1 cut(s)	244
MslI	CAYNNNNRTG	2 cut(s)	78, 392
Msp20I	TGGCCA	1 cut(s)	244
MspI	CCGG	1 cut(s)	335
MspR9I	CCNGG	1 cut(s)	194
MvaI	CCWGG	1 cut(s)	194
NdeII	GATC	4 cut(s)	175, 287, 378, 427
NlaIII	CATG	3 cut(s)	241, 391, 412
NlaIV	GGNNCC	2 cut(s)	235, 373
NsiI	ATGCAT	1 cut(s)	85
PkrI	GCNGC	1 cut(s)	137
Psp6I	CCWGG	1 cut(s)	192
PspEI	GGTNACC	1 cut(s)	274
PspGI	CCWGG	1 cut(s)	192
PspN4I	GGNNCC	2 cut(s)	235, 373
PspPI	GGNCC	3 cut(s)	196, 234, 371
PsuI	RGATCY	1 cut(s)	287
RsaI	GTAC	1 cut(s)	110
RsaNI	GTAC	1 cut(s)	109
RseI	CAYNNNNRTG	2 cut(s)	78, 392
SatI	GCNGC	1 cut(s)	136
Sau3AI	GATC	4 cut(s)	175, 287, 378, 427
Sau96I	GGNCC	3 cut(s)	196, 234, 371
ScrFI	CCNGG	1 cut(s)	194
SduI	GDGCHC	1 cut(s)	253
SetI	ASST	4 cut(s)	105, 167, 195, 230
SfaNI	GCATC	1 cut(s)	70
SinI	GGWCC	2 cut(s)	196, 371
SmiMI	CAYNNNNRTG	2 cut(s)	78, 392
Sse9I	AATT	2 cut(s)	266, 350
SsiI	CCGC	2 cut(s)	135, 222
SspMI	CTAG	2 cut(s)	225, 383
StyD4I	CCNGG	1 cut(s)	192
TasI	AATT	2 cut(s)	266, 350
TatI	WGTACW	1 cut(s)	108
TauI	GCSGC	1 cut(s)	138
TspDTI	ATGAA	5 cut(s)	40, 50, 62, 311, 346
VneI	GTGCAC	1 cut(s)	249
VpaK11BI	GGWCC	2 cut(s)	196, 371
XspI	CTAG	2 cut(s)	225, 383
Zsp2I	ATGCAT	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.