Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0014743

Physical Location & Seq

Genomic Coordinates Reverse (-)

20662548 .. 20663670

Gene Structure 1123 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGCACCCCACACCGCCCAAAAAAAACACCATCATGTCTAACCGCACCACCCACCGGCGCATGTTAGCAGCGACAGAGCCAAAGCCCTCCAAGCACTCCACTTACCTAGATCCTCCTTCCCTGCCCTCTAAACCCTCTTCCACCTCCAATCCCACCTCCAGAGTCAACGCAAGTCAACGACTCCGCAGTTCACAGAGCCTCACAGACACTCGCTTGCAGGCCAAATCGATGTCGGTGTCAATGGATTCCTCCAAGTCTTTCCTCAAATCGAACCCTCAACCTAAATCATTCGACCCCAGAAGCGAAAAACAGAGCAAGAAAACAGAGGAGTCAGAAAAACCCAAAAAACCCAGTAGGGATGTGGTGGCGGTGGTGAATAAGAAGAAGGAAGCTCAAAATGGGTTAGTGGGTTTTGAGGAAAAGAAGAAGTTTGATAGCGGGAGGAGGCTGTCGGTTTCGTCCGCCGCAAGCGGCGGCGGCGGCGGCGGAAGGAGGAAATCCCTGTCTGGGCCGCAGGTGCAGTTGGCGGATGTGTTAGCAAGTAATGGGGTGAGAGTTGTTTCAGCTGATATGCCGCCGTTTATGATGATCCATGCTGTGGAGTGTGCAAGAAAGACGCATGATAGCCTGGAAAAATTCACCTCCAAGACTCTTGCTTTGACTCTCAAAAAGGAATTTGATGGGGTATATGGGCCAGCATGGCACTGCATTGTAGGAACAAGTTTTGGGTCTTTTGTGACACACTCTGTAAGCGGGTTTCTGTATTTCTGGATCGATCAAAAGTTGTACATCCTCTTGTTTAAGACCACTGTACAAAGAGCAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005868 GO:0005875 GO:0006810 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0008092 GO:0008150 GO:0009987 GO:0010970 GO:0015630 GO:0016043 GO:0022607 GO:0030030 GO:0030031 GO:0030286 GO:0030705 GO:0032781 GO:0032991 GO:0043085 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043462 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044782 GO:0045505 GO:0046907 GO:0050790 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051959 GO:0060271 GO:0065007 GO:0065009 GO:0070925 GO:0071840 GO:0099111 GO:0120031 GO:0120036 GO:1902494 GO:2000574 GO:2000576 GO:2000580 GO:2000582

KEGG Pathways

Metabolic & Signaling

ko04962 map04962

Pfam Domains

Protein Families

Dynein_light

Protein Analysis

276

Amino Acids

30.25

Weight (kDa)

10.13

Isoelectric Point (pI)

55.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynein_light	PF01221	185 - 269	1.8e-25	Dynein light chain type 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0014743)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g15920 FvH4_5g15920 FvH4_5g15920
malus_domestica	MD06G1184500.v1.1 MD14G1190400.v1.1
prunus_persica	Prupe.5G183300_v2.0.a1 Prupe.5G183300_v2.0.a1
pyrus_communis	pycom06g16370 pycom14g15810
rosa_chinensis	RchiOBHm_Chr1g0349921 RchiOBHm_Chr7g0180131
rosa_laevigata	RLG00000005290
rosa_roxburghii	Rroxscaffold_3G00273100
rosa_rugosa	Rorug06G0430700
rosa_samantha	Rh7BG031200 Rh7CG033100
rosa_wichuraiana	Rw7G002600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	505
Acc36I	ACCTGC	1 cut(s)	505
AccB7I	CCANNNNNTGG	1 cut(s)	598
AclWI	GGATC	3 cut(s)	104, 583, 779
AcsI	RAATTY	2 cut(s)	635, 674
AfaI	GTAC	2 cut(s)	788, 813
AfiI	CCNNNNNNNGG	3 cut(s)	54, 507, 598
AjnI	CCWGG	1 cut(s)	627
AluBI	AGCT	2 cut(s)	392, 566
AluI	AGCT	2 cut(s)	392, 566
AlwI	GGATC	3 cut(s)	104, 583, 779
AoxI	GGCC	3 cut(s)	219, 509, 692
ApeKI	GCWGC	1 cut(s)	68
ApoI	RAATTY	2 cut(s)	635, 674
ArsI	GACNNNNNNTTYG	2 cut(s)	640, 672
AspLEI	GCGC	1 cut(s)	60
AspS9I	GGNCC	2 cut(s)	509, 692
AsuHPI	GGTGA	3 cut(s)	385, 562, 631
BbvI	GCAGC	1 cut(s)	80
BccI	CCATC	2 cut(s)	38, 674
BceAI	ACGGC	1 cut(s)	562
BciT130I	CCWGG	1 cut(s)	629
BfaI	CTAG	1 cut(s)	107
BfuAI	ACCTGC	1 cut(s)	505
BglI	GCCNNNNNGGC	1 cut(s)	700
BisI	GCNGC	9 cut(s)	69, 465, 472, 475, 478, 481, 484, 512, 575
BlsI	GCNGC	9 cut(s)	70, 466, 473, 476, 479, 482, 485, 513, 576
Bme1390I	CCNGG	1 cut(s)	629
BmgT120I	GGNCC	2 cut(s)	509, 692
BmrFI	CCNGG	1 cut(s)	629
BmrI	ACTGGG	1 cut(s)	345
BmuI	ACTGGG	1 cut(s)	345
BpmI	CTGGAG	1 cut(s)	142
Bsa29I	ATCGAT	2 cut(s)	227, 774
Bsc4I	CCNNNNNNNGG	3 cut(s)	54, 507, 598
Bse118I	RCCGGY	1 cut(s)	54
Bse1I	ACTGG	1 cut(s)	351
BseBI	CCWGG	1 cut(s)	629
BseCI	ATCGAT	2 cut(s)	227, 774
BseGI	GGATG	3 cut(s)	364, 535, 789
BseLI	CCNNNNNNNGG	3 cut(s)	54, 507, 598
BseNI	ACTGG	1 cut(s)	351
BseRI	GAGGAG	2 cut(s)	341, 457
BseXI	GCAGC	1 cut(s)	80
BsgI	GTGCAG	1 cut(s)	539
BshFI	GGCC	3 cut(s)	221, 511, 694
BshVI	ATCGAT	2 cut(s)	227, 774
BsiSI	CCGG	1 cut(s)	55
BslI	CCNNNNNNNGG	3 cut(s)	54, 507, 598
BsnI	GGCC	3 cut(s)	221, 511, 694
Bsp1407I	TGTACA	2 cut(s)	786, 811
Bsp143I	GATC	4 cut(s)	109, 588, 771, 775
BspANI	GGCC	3 cut(s)	221, 511, 694
BspDI	ATCGAT	2 cut(s)	227, 774
BspMI	ACCTGC	1 cut(s)	505
BspPI	GGATC	3 cut(s)	104, 583, 779
BsrFI	RCCGGY	1 cut(s)	54
BsrGI	TGTACA	2 cut(s)	786, 811
BsrI	ACTGG	1 cut(s)	351
BssAI	RCCGGY	1 cut(s)	54
BssMI	GATC	4 cut(s)	109, 588, 771, 775
Bst2UI	CCWGG	1 cut(s)	629
Bst4CI	ACNGT	1 cut(s)	811
Bst6I	CTCTTC	1 cut(s)	142
BstAUI	TGTACA	2 cut(s)	786, 811
BstC8I	GCNNGC	4 cut(s)	215, 219, 469, 696
BstF5I	GGATG	3 cut(s)	364, 535, 789
BstHHI	GCGC	1 cut(s)	60
BstKTI	GATC	4 cut(s)	112, 591, 774, 778
BstMBI	GATC	4 cut(s)	109, 588, 771, 775
BstMWI	GCNNNNNNNGC	6 cut(s)	91, 477, 480, 483, 517, 700
BstNI	CCWGG	1 cut(s)	629
BstNSI	RCATGY	1 cut(s)	64
BstSCI	CCNGG	1 cut(s)	627
BstV1I	GCAGC	1 cut(s)	80
BstX2I	RGATCY	1 cut(s)	109
BstYI	RGATCY	1 cut(s)	109
Bsu15I	ATCGAT	2 cut(s)	227, 774
BsuRI	GGCC	3 cut(s)	221, 511, 694
BsuTUI	ATCGAT	2 cut(s)	227, 774
BtsCI	GGATG	3 cut(s)	364, 535, 789
BtsI	GCAGTG	1 cut(s)	703
BtsIMutI	CAGTG	2 cut(s)	703, 807
BveI	ACCTGC	1 cut(s)	505
Cac8I	GCNNGC	4 cut(s)	215, 219, 469, 696
CfoI	GCGC	1 cut(s)	60
Cfr10I	RCCGGY	1 cut(s)	54
Cfr13I	GGNCC	2 cut(s)	509, 692
ClaI	ATCGAT	2 cut(s)	227, 774
CseI	GACGC	1 cut(s)	625
Csp6I	GTAC	2 cut(s)	787, 812
CviAII	CATG	5 cut(s)	34, 61, 593, 620, 699
CviQI	GTAC	2 cut(s)	787, 812
DpnI	GATC	4 cut(s)	111, 590, 773, 777
DpnII	GATC	4 cut(s)	109, 588, 771, 775
Eam1104I	CTCTTC	1 cut(s)	142
EarI	CTCTTC	1 cut(s)	142
EciI	GGCGGA	3 cut(s)	451, 501, 542
EcoRII	CCWGG	1 cut(s)	627
FaeI	CATG	5 cut(s)	37, 64, 596, 623, 702
FaiI	YATR	9 cut(s)	35, 62, 572, 584, 594, 621, 688, 690, 700
FatI	CATG	5 cut(s)	33, 60, 592, 619, 698
FauI	CCCGC	2 cut(s)	431, 746
Fnu4HI	GCNGC	9 cut(s)	69, 465, 472, 475, 478, 481, 484, 512, 575
FokI	GGATG	3 cut(s)	371, 542, 776
Fsp4HI	GCNGC	9 cut(s)	69, 465, 472, 475, 478, 481, 484, 512, 575
FspBI	CTAG	1 cut(s)	107
GlaI	GCGC	1 cut(s)	59
GluI	GCNGC	9 cut(s)	69, 465, 472, 475, 478, 481, 484, 512, 575
GsuI	CTGGAG	1 cut(s)	142
HaeIII	GGCC	3 cut(s)	221, 511, 694
HapII	CCGG	1 cut(s)	55
HgaI	GACGC	1 cut(s)	625
HhaI	GCGC	1 cut(s)	60
Hin1II	CATG	5 cut(s)	37, 64, 596, 623, 702
Hin6I	GCGC	1 cut(s)	58
HinP1I	GCGC	1 cut(s)	58
HincII	GTYRAC	2 cut(s)	166, 176
HindII	GTYRAC	2 cut(s)	166, 176
HinfI	GANTC	6 cut(s)	162, 180, 245, 329, 649, 661
HpaII	CCGG	1 cut(s)	55
HphI	GGTGA	3 cut(s)	385, 562, 631
Hpy166II	GTNNAC	3 cut(s)	166, 176, 191
Hpy188I	TCNGA	1 cut(s)	334
Hpy188III	TCNNGA	2 cut(s)	159, 769
Hpy8I	GTNNAC	3 cut(s)	166, 176, 191
HpyAV	CCTTC	3 cut(s)	126, 379, 483
HpyCH4III	ACNGT	1 cut(s)	811
HpyCH4V	TGCA	5 cut(s)	4, 217, 520, 608, 708
HpyF10VI	GCNNNNNNNGC	6 cut(s)	91, 477, 480, 483, 517, 700
Hsp92II	CATG	5 cut(s)	37, 64, 596, 623, 702
HspAI	GCGC	1 cut(s)	58
Kzo9I	GATC	4 cut(s)	109, 588, 771, 775
Lsp1109I	GCAGC	1 cut(s)	80
MaeI	CTAG	1 cut(s)	107
MaeIII	GTNAC	1 cut(s)	736
MalI	GATC	4 cut(s)	111, 590, 773, 777
MboI	GATC	4 cut(s)	109, 588, 771, 775
MboII	GAAGA	3 cut(s)	129, 394, 436
MflI	RGATCY	1 cut(s)	109
MluCI	AATT	2 cut(s)	635, 674
MlyI	GAGTC	5 cut(s)	171, 174, 338, 643, 655
MseI	TTAA	1 cut(s)	801
MslI	CAYNNNNRTG	1 cut(s)	32
MspA1I	CMGCKG	1 cut(s)	566
MspI	CCGG	1 cut(s)	55
MspR9I	CCNGG	1 cut(s)	629
MvaI	CCWGG	1 cut(s)	629
MwoI	GCNNNNNNNGC	6 cut(s)	91, 477, 480, 483, 517, 700
NdeII	GATC	4 cut(s)	109, 588, 771, 775
NlaIII	CATG	5 cut(s)	37, 64, 596, 623, 702
NmuCI	GTSAC	1 cut(s)	736
NspI	RCATGY	1 cut(s)	64
PaqCI	CACCTGC	1 cut(s)	505
PfeI	GAWTC	1 cut(s)	245
PflMI	CCANNNNNTGG	1 cut(s)	598
PkrI	GCNGC	9 cut(s)	70, 466, 473, 476, 479, 482, 485, 513, 576
PleI	GAGTC	5 cut(s)	170, 174, 337, 643, 655
PpsI	GAGTC	5 cut(s)	170, 174, 337, 643, 655
Psp6I	CCWGG	1 cut(s)	627
PspGI	CCWGG	1 cut(s)	627
PspPI	GGNCC	2 cut(s)	509, 692
PsuI	RGATCY	1 cut(s)	109
PvuII	CAGCTG	1 cut(s)	566
RsaI	GTAC	2 cut(s)	788, 813
RsaNI	GTAC	2 cut(s)	787, 812
RseI	CAYNNNNRTG	1 cut(s)	32
SaqAI	TTAA	1 cut(s)	801
SatI	GCNGC	9 cut(s)	69, 465, 472, 475, 478, 481, 484, 512, 575
Sau3AI	GATC	4 cut(s)	109, 588, 771, 775
Sau96I	GGNCC	2 cut(s)	509, 692
SchI	GAGTC	5 cut(s)	171, 174, 338, 643, 655
ScrFI	CCNGG	1 cut(s)	629
SetI	ASST	8 cut(s)	108, 146, 158, 283, 394, 519, 568, 644
SgrAI	CRCCGGYG	1 cut(s)	54
SmiMI	CAYNNNNRTG	1 cut(s)	32
Sse9I	AATT	2 cut(s)	635, 674
SspMI	CTAG	1 cut(s)	107
StyD4I	CCNGG	1 cut(s)	627
TaaI	ACNGT	1 cut(s)	811
TaqI	TCGA	4 cut(s)	227, 269, 291, 774
TasI	AATT	2 cut(s)	635, 674
TatI	WGTACW	2 cut(s)	786, 811
TauI	GCSGC	8 cut(s)	467, 474, 477, 480, 483, 486, 514, 577
TfiI	GAWTC	1 cut(s)	245
Tru1I	TTAA	1 cut(s)	801
Tru9I	TTAA	1 cut(s)	801
TscAI	CASTG	2 cut(s)	710, 814
TseFI	GTSAC	1 cut(s)	736
TseI	GCWGC	1 cut(s)	68
Tsp45I	GTSAC	1 cut(s)	736
TspRI	CASTG	2 cut(s)	710, 814
Van91I	CCANNNNNTGG	1 cut(s)	598
XapI	RAATTY	2 cut(s)	635, 674
XceI	RCATGY	1 cut(s)	64
XcmI	CCANNNNNNNNNTGG	1 cut(s)	358
XspI	CTAG	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.