pycom06g20040

Vesicle transport protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0014142
Physical Location & Seq
Forward (+)
23231571 .. 23233899
2329 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1158 bp
ATGTATTGGGATCATTCCAACAAAAAGAAAAAAGAAAAAAGAAAAAAGAAAAAGGAGAGAGAGTGTATTACGGTATTGGGCTCATGGGGATGTGAGTCGCAGGCTTTAAATCGGCGCGCAAGACTTTTGAGGATACAATACAAAGCTGTGCGTTTCATGTCTGAAATAATCAAACTGAATCTCATTTTTCATTTTTCTCGGCAACCAAACATTCATTTTCTCGCGTTTTTTTCCCACCCTGATCCGGCGAAACGATCGGAAGCGCCGATGGACAAGGTGGAGGAGGAGGTGGAGAAGGCGAAGAAGGAGTGGGACGAAGCGTACAGTAACGTCGTACAGCAAATAAAGGCGATCGAAGAGTACGGTGAATCCACCGGAGCTGCTACTATGGAGTCGCAGAAGGACTCGCTGCCCAGGATGAACGGGCTCGCACAAGACGGCTTGTCGTTGCTCAATTCATTGCAGTTCAAGCTCGATCTGTTCGCTCCGCAGTTGCCCACCGACGATCAGGTCCAATCCGCCAAGGCCTTGCTCGAATCTTGGAAAAATCGATCCCACAGTTTGCGCTTGAGTTTGAGGAATGCAAATTTGCAAGCAAAGGCTAACATGAGGAAAGCTGCTCAGAAAGAGAGAGAACTTCTTTTGGGAGGTGGAGAAGAGTCCACGATTCGCAGACGCAACTTACAAACAAAGGCTGGAATGACATCTGCCGCAGAAAGCATCACAGAGAGCCTTCGCCGTACTCGTCAGCTGATGGTTCAGGAAGTGGAACGAAGTGCTGGCACACTCATGACTTTCGAGGAATCTACTGGAGTGCTGAAGAAGGCTGAAAGTGAATATAAGGGACACCGTTCATTGTTGATGCGAACCAGAAACCTACTCTCGACAATGCAACGACAAGATGTCATTGACAGGGTGATACTTGTGCTAGGATTCTTCTTGTTTTCTTTAGCTGTTCTATATGTCGTTTCAAAGCGTATTGGTCTGCTGGCGCTGCAGAGGCAGGTCACATCTGCCATTAAGGCTGGTATGGTTGGGCGAGCAGAACTCAGACCTGGAGCTGTTGAAGATGCCGTAAATCATGCCCAGGCCTATGGCAATGCAGCTCATAAAGTCGAGGAACCTCTAGAAAGAGTGATGCACGACGAACTACGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04130 map04130
Pfam Domains
Protein Families
Sec20

Protein Analysis

386

Amino Acids

43.86

Weight (kDa)

9.72

Isoelectric Point (pI)

54.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec20 PF03908 236 - 327 4.8e-29 Sec20
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014142)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24315
fragaria_vesca FvH4_5g17100
malus_domestica MD06G1229400.v1.1
prunus_persica Prupe.5G230500_v2.0.a1
pyrus_communis pycom06g20040
rosa_chinensis RchiOBHm_Chr7g0178711
rosa_laevigata RLG00000005420
rosa_multiflora Rmu_sc0002320.1_g000020 Rmu_sc0037456.1_g000001
rosa_roxburghii Rroxscaffold_3G00274650
rosa_rugosa Rorug06G0418800 Rorug06G0418800
rosa_samantha Rh7AG018200 Rh7BG017700 Rh7CG018400 Rh7DG018300
rosa_wichuraiana Rw7G001470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 509
Acc36I ACCTGC 1 cut(s) 994
AccII CGCG 2 cut(s) 117, 224
AciI CCGC 3 cut(s) 488, 519, 711
AclWI GGATC 3 cut(s) 18, 236, 546
AcsI RAATTY 1 cut(s) 586
AcuI CTGAAG 1 cut(s) 839
AfaI GTAC 4 cut(s) 323, 336, 362, 742
AfiI CCNNNNNNNGG 1 cut(s) 244
AgsI TTSAA 3 cut(s) 469, 972, 1067
AhdI GACNNNNNGTC 2 cut(s) 442, 902
AjnI CCWGG 3 cut(s) 413, 1054, 1086
AluBI AGCT 8 cut(s) 146, 380, 472, 617, 751, 953, 1061, 1106
AluI AGCT 8 cut(s) 146, 380, 472, 617, 751, 953, 1061, 1106
AlwI GGATC 3 cut(s) 18, 236, 546
AoxI GGCC 2 cut(s) 525, 1089
ApeKI GCWGC 5 cut(s) 380, 409, 617, 994, 1103
ApoI RAATTY 1 cut(s) 586
AspLEI GCGC 5 cut(s) 117, 119, 265, 567, 994
AspS9I GGNCC 1 cut(s) 511
AsuHPI GGTGA 2 cut(s) 377, 928
AvaII GGWCC 1 cut(s) 511
BanII GRGCYC 2 cut(s) 83, 429
BbvI GCAGC 5 cut(s) 367, 396, 604, 981, 1115
BccI CCATC 2 cut(s) 262, 748
BceAI ACGGC 3 cut(s) 454, 723, 1058
BciT130I CCWGG 3 cut(s) 415, 1056, 1088
BciVI GTATCC 1 cut(s) 126
BfaI CTAG 2 cut(s) 929, 1127
BfmI CTRYAG 1 cut(s) 995
BfoI RGCGCY 2 cut(s) 266, 995
BfuAI ACCTGC 1 cut(s) 994
BfuI GTATCC 1 cut(s) 126
BglI GCCNNNNNGGC 1 cut(s) 1022
BisI GCNGC 6 cut(s) 381, 410, 618, 711, 995, 1104
BlsI GCNGC 6 cut(s) 382, 411, 619, 712, 996, 1105
Bme1390I CCNGG 3 cut(s) 415, 1056, 1088
Bme18I GGWCC 1 cut(s) 511
BmeRI GACNNNNNGTC 2 cut(s) 442, 902
BmgT120I GGNCC 1 cut(s) 511
BmiI GGNNCC 1 cut(s) 1122
BmrFI CCNGG 3 cut(s) 415, 1056, 1088
BmsI GCATC 4 cut(s) 729, 852, 1060, 1128
BplI GAGNNNNNCTC 2 cut(s) 1032, 1064
BpmI CTGGAG 2 cut(s) 831, 1077
BpuEI CTTGAG 1 cut(s) 589
Bsa29I ATCGAT 1 cut(s) 550
BsaJI CCNNGG 3 cut(s) 413, 522, 1086
BsaWI WCCGGW 1 cut(s) 374
BsaXI ACNNNNNCTCC 2 cut(s) 47, 77
Bsc4I CCNNNNNNNGG 1 cut(s) 244
Bse1I ACTGG 1 cut(s) 814
Bse3DI GCAATG 2 cut(s) 458, 1105
BseBI CCWGG 3 cut(s) 415, 1056, 1088
BseCI ATCGAT 1 cut(s) 550
BseDI CCNNGG 3 cut(s) 413, 522, 1086
BseGI GGATG 2 cut(s) 95, 423
BseLI CCNNNNNNNGG 1 cut(s) 244
BseMI GCAATG 2 cut(s) 458, 1105
BseMII CTCAG 2 cut(s) 635, 1063
BseNI ACTGG 1 cut(s) 814
BsePI GCGCGC 1 cut(s) 115
BseRI GAGGAG 2 cut(s) 296, 299
BseXI GCAGC 5 cut(s) 367, 396, 604, 981, 1115
Bsh1236I CGCG 2 cut(s) 117, 224
Bsh1285I CGRYCG 2 cut(s) 257, 354
BshFI GGCC 2 cut(s) 527, 1091
BshVI ATCGAT 1 cut(s) 550
BsiEI CGRYCG 2 cut(s) 257, 354
BsiSI CCGG 2 cut(s) 245, 375
BslFI GGGAC 2 cut(s) 326, 858
BslI CCNNNNNNNGG 1 cut(s) 244
BsmFI GGGAC 2 cut(s) 326, 858
BsmI GAATGC 1 cut(s) 586
BsnI GGCC 2 cut(s) 527, 1091
Bsp1286I GDGCHC 2 cut(s) 83, 429
Bsp143I GATC 7 cut(s) 10, 241, 254, 351, 475, 505, 551
BspACI CCGC 3 cut(s) 488, 519, 711
BspANI GGCC 2 cut(s) 527, 1091
BspCNI CTCAG 2 cut(s) 634, 1062
BspDI ATCGAT 1 cut(s) 550
BspFNI CGCG 2 cut(s) 117, 224
BspHI TCATGA 1 cut(s) 789
BspLI GGNNCC 1 cut(s) 1122
BspMAI CTGCAG 1 cut(s) 999
BspMI ACCTGC 1 cut(s) 994
BspPI GGATC 3 cut(s) 18, 236, 546
BsrDI GCAATG 2 cut(s) 458, 1105
BsrI ACTGG 1 cut(s) 814
BssECI CCNNGG 3 cut(s) 413, 522, 1086
BssHII GCGCGC 1 cut(s) 115
BssMI GATC 7 cut(s) 10, 241, 254, 351, 475, 505, 551
BssT1I CCWWGG 1 cut(s) 522
Bst2UI CCWGG 3 cut(s) 415, 1056, 1088
Bst4CI ACNGT 5 cut(s) 73, 326, 365, 560, 851
Bst6I CTCTTC 2 cut(s) 351, 651
BstC8I GCNNGC 7 cut(s) 102, 117, 429, 594, 781, 990, 1041
BstDEI CTNAG 2 cut(s) 621, 1049
BstF5I GGATG 2 cut(s) 95, 423
BstFNI CGCG 2 cut(s) 117, 224
BstH2I RGCGCY 2 cut(s) 266, 995
BstHHI GCGC 5 cut(s) 117, 119, 265, 567, 994
BstKTI GATC 7 cut(s) 13, 244, 257, 354, 478, 508, 554
BstMBI GATC 7 cut(s) 10, 241, 254, 351, 475, 505, 551
BstMCI CGRYCG 2 cut(s) 257, 354
BstMWI GCNNNNNNNGC 4 cut(s) 469, 994, 1000, 1022
BstNI CCWGG 3 cut(s) 415, 1056, 1088
BstSCI CCNGG 3 cut(s) 413, 1054, 1086
BstSFI CTRYAG 1 cut(s) 995
BstUI CGCG 2 cut(s) 117, 224
BstV1I GCAGC 5 cut(s) 367, 396, 604, 981, 1115
BstXI CCANNNNNNTGG 1 cut(s) 1094
Bsu15I ATCGAT 1 cut(s) 550
BsuI GTATCC 1 cut(s) 126
BsuRI GGCC 2 cut(s) 527, 1091
BsuTUI ATCGAT 1 cut(s) 550
BtsCI GGATG 2 cut(s) 95, 423
BveI ACCTGC 1 cut(s) 994
Cac8I GCNNGC 7 cut(s) 102, 117, 429, 594, 781, 990, 1041
CciI TCATGA 1 cut(s) 789
CfoI GCGC 5 cut(s) 117, 119, 265, 567, 994
Cfr13I GGNCC 1 cut(s) 511
ClaI ATCGAT 1 cut(s) 550
CseI GACGC 1 cut(s) 684
Csp6I GTAC 4 cut(s) 322, 335, 361, 741
CviAII CATG 5 cut(s) 84, 157, 607, 790, 1082
CviQI GTAC 4 cut(s) 322, 335, 361, 741
DdeI CTNAG 2 cut(s) 621, 1049
DpnI GATC 7 cut(s) 12, 243, 256, 353, 477, 507, 553
DpnII GATC 7 cut(s) 10, 241, 254, 351, 475, 505, 551
DraI TTTAAA 1 cut(s) 108
DrdI GACNNNNNNGTC 1 cut(s) 509
DriI GACNNNNNGTC 2 cut(s) 442, 902
DseDI GACNNNNNNGTC 1 cut(s) 509
Eam1104I CTCTTC 2 cut(s) 351, 651
Eam1105I GACNNNNNGTC 2 cut(s) 442, 902
EarI CTCTTC 2 cut(s) 351, 651
EciI GGCGGA 1 cut(s) 508
Eco130I CCWWGG 1 cut(s) 522
Eco147I AGGCCT 2 cut(s) 527, 1091
Eco24I GRGCYC 2 cut(s) 83, 429
Eco47I GGWCC 1 cut(s) 511
Eco57I CTGAAG 1 cut(s) 839
EcoRII CCWGG 3 cut(s) 413, 1054, 1086
EcoT14I CCWWGG 1 cut(s) 522
EcoT38I GRGCYC 2 cut(s) 83, 429
ErhI CCWWGG 1 cut(s) 522
FaeI CATG 5 cut(s) 87, 160, 610, 793, 1085
FaqI GGGAC 2 cut(s) 326, 858
FatI CATG 5 cut(s) 83, 156, 606, 789, 1081
Fnu4HI GCNGC 6 cut(s) 381, 410, 618, 711, 995, 1104
FokI GGATG 2 cut(s) 102, 430
FriOI GRGCYC 2 cut(s) 83, 429
Fsp4HI GCNGC 6 cut(s) 381, 410, 618, 711, 995, 1104
FspBI CTAG 2 cut(s) 929, 1127
GlaI GCGC 5 cut(s) 116, 118, 264, 566, 993
GluI GCNGC 6 cut(s) 381, 410, 618, 711, 995, 1104
GsuI CTGGAG 2 cut(s) 831, 1077
HaeII RGCGCY 2 cut(s) 266, 995
HaeIII GGCC 2 cut(s) 527, 1091
HapII CCGG 2 cut(s) 245, 375
HgaI GACGC 1 cut(s) 684
HhaI GCGC 5 cut(s) 117, 119, 265, 567, 994
Hin1II CATG 5 cut(s) 87, 160, 610, 793, 1085
Hin6I GCGC 5 cut(s) 115, 117, 263, 565, 992
HinP1I GCGC 5 cut(s) 115, 117, 263, 565, 992
HpaII CCGG 2 cut(s) 245, 375
HphI GGTGA 2 cut(s) 377, 928
Hpy166II GTNNAC 1 cut(s) 663
Hpy188I TCNGA 4 cut(s) 163, 259, 624, 1052
Hpy188III TCNNGA 4 cut(s) 761, 790, 883, 1127
Hpy8I GTNNAC 1 cut(s) 663
Hpy99I CGWCG 3 cut(s) 335, 506, 1148
HpyAV CCTTC 5 cut(s) 289, 298, 394, 743, 817
HpyCH4III ACNGT 5 cut(s) 73, 326, 365, 560, 851
HpyCH4IV ACGT 1 cut(s) 330
HpyCH4V TGCA 7 cut(s) 463, 584, 592, 892, 997, 1103, 1141
HpyF10VI GCNNNNNNNGC 4 cut(s) 469, 994, 1000, 1022
HpyF3I CTNAG 2 cut(s) 621, 1049
HpySE526I ACGT 1 cut(s) 330
Hsp92II CATG 5 cut(s) 87, 160, 610, 793, 1085
HspAI GCGC 5 cut(s) 115, 117, 263, 565, 992
Kzo9I GATC 7 cut(s) 10, 241, 254, 351, 475, 505, 551
LmnI GCTCC 3 cut(s) 377, 490, 1058
Lsp1109I GCAGC 5 cut(s) 367, 396, 604, 981, 1115
LweI GCATC 4 cut(s) 729, 852, 1060, 1128
MaeI CTAG 2 cut(s) 929, 1127
MaeII ACGT 1 cut(s) 330
MaeIII GTNAC 2 cut(s) 326, 1006
MalI GATC 7 cut(s) 12, 243, 256, 353, 477, 507, 553
MboI GATC 7 cut(s) 10, 241, 254, 351, 475, 505, 551
MboII GAAGA 6 cut(s) 313, 368, 668, 832, 928, 1079
MhlI GDGCHC 2 cut(s) 83, 429
MluCI AATT 2 cut(s) 454, 586
MlyI GAGTC 4 cut(s) 104, 398, 401, 668
MmeI TCCRAC 1 cut(s) 42
MseI TTAA 2 cut(s) 107, 1020
MslI CAYNNNNRTG 2 cut(s) 88, 788
MspA1I CMGCKG 1 cut(s) 751
MspI CCGG 2 cut(s) 245, 375
MspR9I CCNGG 3 cut(s) 415, 1056, 1088
Mva1269I GAATGC 1 cut(s) 586
MvaI CCWGG 3 cut(s) 415, 1056, 1088
MvnI CGCG 2 cut(s) 117, 224
MwoI GCNNNNNNNGC 4 cut(s) 469, 994, 1000, 1022
NdeII GATC 7 cut(s) 10, 241, 254, 351, 475, 505, 551
NlaIII CATG 5 cut(s) 87, 160, 610, 793, 1085
NlaIV GGNNCC 1 cut(s) 1122
NmeAIII GCCGAG 1 cut(s) 178
NmuCI GTSAC 1 cut(s) 1006
PagI TCATGA 1 cut(s) 789
PauI GCGCGC 1 cut(s) 115
PceI AGGCCT 2 cut(s) 527, 1091
PcsI WCGNNNNNNNCGW 2 cut(s) 263, 742
PctI GAATGC 1 cut(s) 586
PfeI GAWTC 6 cut(s) 178, 368, 536, 667, 803, 933
PkrI GCNGC 6 cut(s) 382, 411, 619, 712, 996, 1105
Ple19I CGATCG 2 cut(s) 257, 354
PleI GAGTC 4 cut(s) 103, 398, 400, 667
PpsI GAGTC 4 cut(s) 103, 398, 400, 667
Psp6I CCWGG 3 cut(s) 413, 1054, 1086
PspGI CCWGG 3 cut(s) 413, 1054, 1086
PspN4I GGNNCC 1 cut(s) 1122
PspPI GGNCC 1 cut(s) 511
PstI CTGCAG 1 cut(s) 999
PteI GCGCGC 1 cut(s) 115
PvuI CGATCG 2 cut(s) 257, 354
PvuII CAGCTG 1 cut(s) 751
RsaI GTAC 4 cut(s) 323, 336, 362, 742
RsaNI GTAC 4 cut(s) 322, 335, 361, 741
RseI CAYNNNNRTG 2 cut(s) 88, 788
SaqAI TTAA 2 cut(s) 107, 1020
SatI GCNGC 6 cut(s) 381, 410, 618, 711, 995, 1104
Sau3AI GATC 7 cut(s) 10, 241, 254, 351, 475, 505, 551
Sau96I GGNCC 1 cut(s) 511
SchI GAGTC 4 cut(s) 104, 398, 401, 668
ScrFI CCNGG 3 cut(s) 415, 1056, 1088
SduI GDGCHC 2 cut(s) 83, 429
SfaNI GCATC 4 cut(s) 729, 852, 1060, 1128
SfcI CTRYAG 1 cut(s) 995
SinI GGWCC 1 cut(s) 511
SmiMI CAYNNNNRTG 2 cut(s) 88, 788
SmlI CTYRAG 1 cut(s) 568
SmoI CTYRAG 1 cut(s) 568
Sse9I AATT 2 cut(s) 454, 586
SseBI AGGCCT 2 cut(s) 527, 1091
SsiI CCGC 3 cut(s) 488, 519, 711
SspMI CTAG 2 cut(s) 929, 1127
StuI AGGCCT 2 cut(s) 527, 1091
StyD4I CCNGG 3 cut(s) 413, 1054, 1086
StyI CCWWGG 1 cut(s) 522
TaaI ACNGT 5 cut(s) 73, 326, 365, 560, 851
TaiI ACGT 1 cut(s) 333
TaqI TCGA 7 cut(s) 354, 474, 534, 550, 798, 884, 1116
TasI AATT 2 cut(s) 454, 586
TauI GCSGC 1 cut(s) 713
TfiI GAWTC 6 cut(s) 178, 368, 536, 667, 803, 933
Tru1I TTAA 2 cut(s) 107, 1020
Tru9I TTAA 2 cut(s) 107, 1020
TseFI GTSAC 1 cut(s) 1006
TseI GCWGC 5 cut(s) 380, 409, 617, 994, 1103
Tsp45I GTSAC 1 cut(s) 1006
TspDTI ATGAA 6 cut(s) 145, 179, 203, 434, 447, 843
VpaK11BI GGWCC 1 cut(s) 511
XapI RAATTY 1 cut(s) 586
XbaI TCTAGA 1 cut(s) 1126
XspI CTAG 2 cut(s) 929, 1127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.