pycom06g20770

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0011123
Physical Location & Seq
Forward (+)
23664255 .. 23666068
1814 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 390 bp
ATGGCATTGCAGTGGATGATACTGACGTACGTAGTGGCGGCAGAGGCGGCGTTGGCCTTCCTGCTAACCATTCCGGCGCCCAAGCCGTTGAAGAATCGATTCGTGTCGCTGGTCTCTCTAATCCTCCAACCCGCCCTCTTCATCGTCCCCTTCGCCGGATTTCAGCTGCTGGATATATATTGGAAGAATGAGCACCGCTTGGCCTGCACCTCTGAGACTTGCACCGCCTCTGACCGTGACCGCTATGAGAAATCCCTTTACAAGGCTCAAAGGAATGTAATTCTTTGTGCTTCAGCATGTCTGCTTTACTGGTGTCTCTTTCGCATCTGTAAATATTACAAGGACATTCAGAACTTGGAGGAAGTGGAGAAGAGGTACAAGGACGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bap31

Protein Analysis

130

Amino Acids

15.05

Weight (kDa)

8.52

Isoelectric Point (pI)

47.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bap31 PF05529 1 - 121 5.1e-07 Bap31/Bap29 transmembrane region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 76
AciI CCGC 6 cut(s) 38, 47, 132, 196, 225, 241
AcuI CTGAAG 1 cut(s) 276
AcyI GRCGYC 1 cut(s) 77
AfaI GTAC 2 cut(s) 29, 377
AfiI CCNNNNNNNGG 2 cut(s) 155, 262
AgsI TTSAA 1 cut(s) 91
AluBI AGCT 1 cut(s) 166
AluI AGCT 1 cut(s) 166
Alw21I GWGCWC 1 cut(s) 195
Alw26I GTCTC 3 cut(s) 118, 209, 320
AlwNI CAGNNNCTG 1 cut(s) 169
AoxI GGCC 2 cut(s) 54, 201
ApeKI GCWGC 1 cut(s) 166
Asp700I GAANNNNTTC 1 cut(s) 98
AspLEI GCGC 1 cut(s) 79
BaeI ACNNNNGTAYC 2 cut(s) 11, 44
BanI GGYRCC 1 cut(s) 76
Bbv12I GWGCWC 1 cut(s) 195
BbvI GCAGC 1 cut(s) 153
BceAI ACGGC 1 cut(s) 70
BcoDI GTCTC 3 cut(s) 118, 209, 320
BfoI RGCGCY 1 cut(s) 80
BisI GCNGC 3 cut(s) 39, 48, 167
BlsI GCNGC 3 cut(s) 40, 49, 168
BmiI GGNNCC 1 cut(s) 78
BmsI GCATC 1 cut(s) 333
Bsa29I ATCGAT 1 cut(s) 97
BsaAI YACGTR 1 cut(s) 31
BsaHI GRCGYC 1 cut(s) 77
BsaI GGTCTC 1 cut(s) 118
BsaXI ACNNNNNCTCC 2 cut(s) 359, 389
Bsc4I CCNNNNNNNGG 2 cut(s) 155, 262
Bse1I ACTGG 1 cut(s) 314
Bse3DI GCAATG 1 cut(s) 5
BseCI ATCGAT 1 cut(s) 97
BseGI GGATG 1 cut(s) 21
BseLI CCNNNNNNNGG 2 cut(s) 155, 262
BseMI GCAATG 1 cut(s) 5
BseMII CTCAG 1 cut(s) 204
BseNI ACTGG 1 cut(s) 314
BseXI GCAGC 1 cut(s) 153
BsgI GTGCAG 1 cut(s) 190
BshFI GGCC 2 cut(s) 56, 203
BshNI GGYRCC 1 cut(s) 76
BshVI ATCGAT 1 cut(s) 97
BsiHKAI GWGCWC 1 cut(s) 195
BsiSI CCGG 2 cut(s) 74, 156
BsiWI CGTACG 1 cut(s) 27
BslFI GGGAC 1 cut(s) 131
BslI CCNNNNNNNGG 2 cut(s) 155, 262
BsmAI GTCTC 3 cut(s) 118, 209, 320
BsmFI GGGAC 1 cut(s) 131
BsnI GGCC 2 cut(s) 56, 203
Bso31I GGTCTC 1 cut(s) 118
Bsp1286I GDGCHC 1 cut(s) 195
BspACI CCGC 6 cut(s) 38, 47, 132, 196, 225, 241
BspANI GGCC 2 cut(s) 56, 203
BspCNI CTCAG 1 cut(s) 205
BspDI ATCGAT 1 cut(s) 97
BspLI GGNNCC 1 cut(s) 78
BspT107I GGYRCC 1 cut(s) 76
BspTNI GGTCTC 1 cut(s) 118
BsrDI GCAATG 1 cut(s) 5
BsrI ACTGG 1 cut(s) 314
BssNI GRCGYC 1 cut(s) 77
Bst4CI ACNGT 1 cut(s) 236
Bst6I CTCTTC 2 cut(s) 143, 365
BstACI GRCGYC 1 cut(s) 77
BstBAI YACGTR 1 cut(s) 31
BstC8I GCNNGC 1 cut(s) 205
BstDEI CTNAG 1 cut(s) 213
BstENI CCTNNNNNAGG 1 cut(s) 260
BstF5I GGATG 1 cut(s) 21
BstH2I RGCGCY 1 cut(s) 80
BstHHI GCGC 1 cut(s) 79
BstMAI GTCTC 3 cut(s) 118, 209, 320
BstMWI GCNNNNNNNGC 4 cut(s) 44, 47, 53, 204
BstNSI RCATGY 1 cut(s) 300
BstSNI TACGTA 1 cut(s) 31
BstV1I GCAGC 1 cut(s) 153
Bsu15I ATCGAT 1 cut(s) 97
BsuRI GGCC 2 cut(s) 56, 203
BsuTUI ATCGAT 1 cut(s) 97
BtsCI GGATG 1 cut(s) 21
BtsI GCAGTG 1 cut(s) 17
BtsIMutI CAGTG 1 cut(s) 17
Cac8I GCNNGC 1 cut(s) 205
CaiI CAGNNNCTG 1 cut(s) 169
CfoI GCGC 1 cut(s) 79
ClaI ATCGAT 1 cut(s) 97
Csp6I GTAC 2 cut(s) 28, 376
CviAII CATG 1 cut(s) 297
CviJI RGCY 5 cut(s) 56, 85, 166, 203, 266
CviKI_1 RGCY 5 cut(s) 56, 85, 166, 203, 266
CviQI GTAC 2 cut(s) 28, 376
DdeI CTNAG 1 cut(s) 213
DinI GGCGCC 1 cut(s) 78
Eam1104I CTCTTC 2 cut(s) 143, 365
EarI CTCTTC 2 cut(s) 143, 365
Eco105I TACGTA 1 cut(s) 31
Eco31I GGTCTC 1 cut(s) 118
Eco57I CTGAAG 1 cut(s) 276
EcoNI CCTNNNNNAGG 1 cut(s) 260
EgeI GGCGCC 1 cut(s) 78
EheI GGCGCC 1 cut(s) 78
FaeI CATG 1 cut(s) 300
FaiI YATR 4 cut(s) 176, 178, 246, 298
FaqI GGGAC 1 cut(s) 131
FatI CATG 1 cut(s) 296
FauI CCCGC 1 cut(s) 139
Fnu4HI GCNGC 3 cut(s) 39, 48, 167
FokI GGATG 1 cut(s) 28
Fsp4HI GCNGC 3 cut(s) 39, 48, 167
GlaI GCGC 1 cut(s) 78
GluI GCNGC 3 cut(s) 39, 48, 167
HaeII RGCGCY 1 cut(s) 80
HaeIII GGCC 2 cut(s) 56, 203
HapII CCGG 2 cut(s) 74, 156
HhaI GCGC 1 cut(s) 79
Hin1I GRCGYC 1 cut(s) 77
Hin1II CATG 1 cut(s) 300
Hin6I GCGC 1 cut(s) 77
HinP1I GCGC 1 cut(s) 77
HinfI GANTC 2 cut(s) 94, 99
HpaII CCGG 2 cut(s) 74, 156
Hpy188I TCNGA 3 cut(s) 214, 232, 351
HpyAV CCTTC 2 cut(s) 67, 160
HpyCH4III ACNGT 1 cut(s) 236
HpyCH4IV ACGT 2 cut(s) 26, 30
HpyCH4V TGCA 3 cut(s) 10, 207, 222
HpyF10VI GCNNNNNNNGC 4 cut(s) 44, 47, 53, 204
HpyF3I CTNAG 1 cut(s) 213
HpySE526I ACGT 2 cut(s) 26, 30
Hsp92I GRCGYC 1 cut(s) 77
Hsp92II CATG 1 cut(s) 300
HspAI GCGC 1 cut(s) 77
KasI GGCGCC 1 cut(s) 76
LpnPI CCDG 7 cut(s) 74, 87, 95, 155, 169, 217, 295
Lsp1109I GCAGC 1 cut(s) 153
LweI GCATC 1 cut(s) 333
MaeII ACGT 2 cut(s) 26, 30
MaeIII GTNAC 1 cut(s) 236
MboII GAAGA 4 cut(s) 103, 130, 196, 382
MhlI GDGCHC 1 cut(s) 195
MluCI AATT 1 cut(s) 279
Mly113I GGCGCC 1 cut(s) 77
MmeI TCCRAC 1 cut(s) 151
MnlI CCTC 7 cut(s) 37, 134, 146, 220, 238, 352, 366
MroXI GAANNNNTTC 1 cut(s) 98
MslI CAYNNNNRTG 1 cut(s) 10
MspA1I CMGCKG 1 cut(s) 166
MspI CCGG 2 cut(s) 74, 156
MwoI GCNNNNNNNGC 4 cut(s) 44, 47, 53, 204
NarI GGCGCC 1 cut(s) 77
NlaIII CATG 1 cut(s) 300
NlaIV GGNNCC 1 cut(s) 78
NmuCI GTSAC 1 cut(s) 236
NspI RCATGY 1 cut(s) 300
PdmI GAANNNNTTC 1 cut(s) 98
PfeI GAWTC 2 cut(s) 94, 99
Pfl23II CGTACG 1 cut(s) 27
PkrI GCNGC 3 cut(s) 40, 49, 168
PluTI GGCGCC 1 cut(s) 80
Ppu21I YACGTR 1 cut(s) 31
PspLI CGTACG 1 cut(s) 27
PspN4I GGNNCC 1 cut(s) 78
PstNI CAGNNNCTG 1 cut(s) 169
PvuII CAGCTG 1 cut(s) 166
RsaI GTAC 2 cut(s) 29, 377
RsaNI GTAC 2 cut(s) 28, 376
RseI CAYNNNNRTG 1 cut(s) 10
SatI GCNGC 3 cut(s) 39, 48, 167
SduI GDGCHC 1 cut(s) 195
SetI ASST 5 cut(s) 29, 33, 168, 212, 377
SfaNI GCATC 1 cut(s) 333
SfoI GGCGCC 1 cut(s) 78
SmiMI CAYNNNNRTG 1 cut(s) 10
SnaBI TACGTA 1 cut(s) 31
Sse9I AATT 1 cut(s) 279
SsiI CCGC 6 cut(s) 38, 47, 132, 196, 225, 241
SspDI GGCGCC 1 cut(s) 76
SspI AATATT 1 cut(s) 335
TaaI ACNGT 1 cut(s) 236
TaiI ACGT 2 cut(s) 29, 33
TaqI TCGA 1 cut(s) 97
TasI AATT 1 cut(s) 279
TauI GCSGC 2 cut(s) 41, 50
TfiI GAWTC 2 cut(s) 94, 99
TscAI CASTG 1 cut(s) 17
TseFI GTSAC 1 cut(s) 236
TseI GCWGC 1 cut(s) 166
Tsp45I GTSAC 1 cut(s) 236
TspDTI ATGAA 1 cut(s) 130
TspRI CASTG 1 cut(s) 17
XagI CCTNNNNNAGG 1 cut(s) 260
XceI RCATGY 1 cut(s) 300
XmnI GAANNNNTTC 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.