pycom07g04680

UPF0160 protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0012304
Physical Location & Seq
Forward (+)
4016768 .. 4018567
1800 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 690 bp
ATGACAGATAGGTTTAAGCAAACGCTTCCATTCGTCTTCCCCACCCGCCACCATCGCCTATACCTCCACCTCACTCGCTCTCTCATCGCCACCGTTACTCCGCCTAAGCGAGTCGGGGCCCACAATGGCAGCTTCCACTGCGACGAAGCCCTCGGCTGCTTCATGATTCGCCTCACCGACAAGTTCTCCAATGCCGAAATCGTCCGCACTCGAGACCCCCAGGTTTTGGAGGGTCCGGATGCTGTGCTTGATGTTGGCGGTGTGTATGATCCTAGTAGGGATCGGTATGATCATCACCAGAAGGGATTTGAGGAGGTTTTCGGACACGGGTTTAAGACCAAGCTGAGTAGTGCTGGTCTGGTTTACAAGCATTTCGGGAAGGAAATAATAGCCAAGGTGCTTCAGGTTGATGAAGGCCACCTCGATGTGCATCGGTTGTTCTTAGCTGTTTACAAAAGCTTTATGGAGGCAATTGATGCTGTCGACAATGGGATCAATCAGTACGACACTGACCAGCCTCCGAGATATGCGAATATCACACACTTGTCTTCACGGGTGAGCAGGTTGAATTTGGATTGGATAGAACCTGATCAATCATCTGACAAGGAGAACAAAGCCTTTCAACGAGCAATGGAACTGGCAGGAAGTGAGTTTTTAAGTTTCGAGGACAACCAAATAAACAGGGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0160

Protein Analysis

230

Amino Acids

26.15

Weight (kDa)

6.3

Isoelectric Point (pI)

31.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MYG1_exonuc PF03690 38 - 221 4e-75 Uncharacterised protein family (UPF0160)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012304)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49320 AT3G49320 AT5G41970
fragaria_vesca FvH4_5g11020
malus_domestica MD06G1117500.v1.1 MD14G1124700.v1.1
prunus_persica Prupe.5G128600_v2.0.a1
pyrus_communis pycom07g04680 pycom14g11040
rosa_chinensis RchiOBHm_Chr7g0186791
rosa_laevigata RLG00000004815
rosa_multiflora Rmu_ssc0000024.1_g000044
rosa_roxburghii Rroxscaffold_3G00267820
rosa_rugosa Rorug06G0476700
rosa_samantha Rh7AG063800 Rh7BG080300 Rh7CG083700 Rh7DG084600
rosa_wichuraiana Rw7G007260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 552
AccB7I CCANNNNNTGG 1 cut(s) 226
AccI GTMKAC 1 cut(s) 483
AccIII TCCGGA 1 cut(s) 235
AciI CCGC 4 cut(s) 46, 101, 205, 258
AclWI GGATC 3 cut(s) 263, 288, 500
AcsI RAATTY 1 cut(s) 568
AcuI CTGAAG 1 cut(s) 386
AfaI GTAC 1 cut(s) 503
AfiI CCNNNNNNNGG 1 cut(s) 226
AgsI TTSAA 2 cut(s) 568, 623
AjnI CCWGG 1 cut(s) 219
AluBI AGCT 4 cut(s) 132, 343, 446, 459
AluI AGCT 4 cut(s) 132, 343, 446, 459
Alw26I GTCTC 1 cut(s) 207
AlwI GGATC 3 cut(s) 263, 288, 500
AlwNI CAGNNNCTG 1 cut(s) 687
Ama87I CYCGRG 1 cut(s) 210
Aor13HI TCCGGA 1 cut(s) 235
AoxI GGCC 2 cut(s) 117, 415
ApaI GGGCCC 1 cut(s) 121
ApeKI GCWGC 2 cut(s) 129, 156
ApoI RAATTY 1 cut(s) 568
AspS9I GGNCC 3 cut(s) 117, 118, 233
AsuHPI GGTGA 3 cut(s) 166, 287, 568
AvaI CYCGRG 1 cut(s) 210
AvaII GGWCC 1 cut(s) 233
BaeGI GKGCMC 1 cut(s) 121
BanII GRGCYC 1 cut(s) 121
BbsI GAAGAC 2 cut(s) 28, 540
BbvI GCAGC 2 cut(s) 141, 143
BccI CCATC 1 cut(s) 60
BciT130I CCWGG 1 cut(s) 221
BclI TGATCA 2 cut(s) 289, 589
BcoDI GTCTC 1 cut(s) 207
BfaI CTAG 1 cut(s) 273
BfuAI ACCTGC 1 cut(s) 552
BisI GCNGC 2 cut(s) 130, 157
BlsI GCNGC 2 cut(s) 131, 158
Bme1390I CCNGG 1 cut(s) 221
Bme18I GGWCC 1 cut(s) 233
BmeT110I CYCGRG 1 cut(s) 210
BmgT120I GGNCC 3 cut(s) 117, 118, 233
BmiI GGNNCC 3 cut(s) 118, 119, 234
BmrFI CCNGG 1 cut(s) 221
BmsI GCATC 3 cut(s) 229, 439, 466
BpiI GAAGAC 2 cut(s) 28, 540
Bpu10I CCTNAGC 1 cut(s) 105
BsaBI GATNNNNATC 1 cut(s) 429
BsaI GGTCTC 1 cut(s) 207
BsaJI CCNNGG 3 cut(s) 151, 219, 393
BsaWI WCCGGW 1 cut(s) 235
BsaXI ACNNNNNCTCC 4 cut(s) 82, 112, 170, 200
Bsc4I CCNNNNNNNGG 1 cut(s) 226
Bse1I ACTGG 1 cut(s) 642
Bse3DI GCAATG 1 cut(s) 636
Bse8I GATNNNNATC 1 cut(s) 429
BseAI TCCGGA 1 cut(s) 235
BseBI CCWGG 1 cut(s) 221
BseDI CCNNGG 3 cut(s) 151, 219, 393
BseGI GGATG 1 cut(s) 244
BseJI GATNNNNATC 1 cut(s) 429
BseLI CCNNNNNNNGG 1 cut(s) 226
BseMI GCAATG 1 cut(s) 636
BseMII CTCAG 1 cut(s) 335
BseNI ACTGG 1 cut(s) 642
BseRI GAGGAG 1 cut(s) 326
BseSI GKGCMC 1 cut(s) 121
BseXI GCAGC 2 cut(s) 141, 143
BshFI GGCC 2 cut(s) 119, 417
BsiHKCI CYCGRG 1 cut(s) 210
BsiSI CCGG 1 cut(s) 236
BslI CCNNNNNNNGG 1 cut(s) 226
BsmAI GTCTC 1 cut(s) 207
BsnI GGCC 2 cut(s) 119, 417
Bso31I GGTCTC 1 cut(s) 207
BsoBI CYCGRG 1 cut(s) 210
Bsp120I GGGCCC 1 cut(s) 117
Bsp1286I GDGCHC 1 cut(s) 121
Bsp13I TCCGGA 1 cut(s) 235
Bsp143I GATC 5 cut(s) 268, 280, 289, 492, 589
BspACI CCGC 4 cut(s) 46, 101, 205, 258
BspANI GGCC 2 cut(s) 119, 417
BspCNI CTCAG 1 cut(s) 336
BspEI TCCGGA 1 cut(s) 235
BspHI TCATGA 1 cut(s) 162
BspLI GGNNCC 3 cut(s) 118, 119, 234
BspMI ACCTGC 1 cut(s) 552
BspPI GGATC 3 cut(s) 263, 288, 500
BspTNI GGTCTC 1 cut(s) 207
BsrDI GCAATG 1 cut(s) 636
BsrI ACTGG 1 cut(s) 642
BssECI CCNNGG 3 cut(s) 151, 219, 393
BssMI GATC 5 cut(s) 268, 280, 289, 492, 589
BssT1I CCWWGG 1 cut(s) 393
Bst2UI CCWGG 1 cut(s) 221
Bst4CI ACNGT 1 cut(s) 94
BstAPI GCANNNNNTGC 1 cut(s) 476
BstDEI CTNAG 3 cut(s) 105, 344, 442
BstF5I GGATG 1 cut(s) 244
BstKTI GATC 5 cut(s) 271, 283, 292, 495, 592
BstMAI GTCTC 1 cut(s) 207
BstMBI GATC 5 cut(s) 268, 280, 289, 492, 589
BstMWI GCNNNNNNNGC 3 cut(s) 54, 138, 476
BstNI CCWGG 1 cut(s) 221
BstSCI CCNGG 1 cut(s) 219
BstSLI GKGCMC 1 cut(s) 121
BstV1I GCAGC 2 cut(s) 141, 143
BstV2I GAAGAC 2 cut(s) 28, 540
BsuRI GGCC 2 cut(s) 119, 417
BtgZI GCGATG 2 cut(s) 38, 70
BtsCI GGATG 1 cut(s) 244
BtsI GCAGTG 1 cut(s) 136
BtsIMutI CAGTG 2 cut(s) 136, 507
BveI ACCTGC 1 cut(s) 552
CaiI CAGNNNCTG 1 cut(s) 687
CciI TCATGA 1 cut(s) 162
Cfr13I GGNCC 3 cut(s) 117, 118, 233
Csp6I GTAC 1 cut(s) 502
CviAII CATG 1 cut(s) 163
CviQI GTAC 1 cut(s) 502
DdeI CTNAG 3 cut(s) 105, 344, 442
DpnI GATC 5 cut(s) 270, 282, 291, 494, 591
DpnII GATC 5 cut(s) 268, 280, 289, 492, 589
EciI GGCGGA 1 cut(s) 90
Eco130I CCWWGG 1 cut(s) 393
Eco24I GRGCYC 1 cut(s) 121
Eco31I GGTCTC 1 cut(s) 207
Eco47I GGWCC 1 cut(s) 233
Eco57I CTGAAG 1 cut(s) 386
Eco88I CYCGRG 1 cut(s) 210
EcoO109I RGGNCCY 1 cut(s) 117
EcoRII CCWGG 1 cut(s) 219
EcoT14I CCWWGG 1 cut(s) 393
EcoT38I GRGCYC 1 cut(s) 121
ErhI CCWWGG 1 cut(s) 393
FaeI CATG 1 cut(s) 166
FaiI YATR 6 cut(s) 61, 164, 267, 288, 464, 528
FatI CATG 1 cut(s) 162
FauI CCCGC 1 cut(s) 53
FbaI TGATCA 2 cut(s) 289, 589
FblI GTMKAC 1 cut(s) 483
Fnu4HI GCNGC 2 cut(s) 130, 157
FokI GGATG 1 cut(s) 251
FriOI GRGCYC 1 cut(s) 121
Fsp4HI GCNGC 2 cut(s) 130, 157
FspBI CTAG 1 cut(s) 273
GluI GCNGC 2 cut(s) 130, 157
HaeIII GGCC 2 cut(s) 119, 417
HapII CCGG 1 cut(s) 236
Hin1II CATG 1 cut(s) 166
HincII GTYRAC 1 cut(s) 484
HindII GTYRAC 1 cut(s) 484
HindIII AAGCTT 1 cut(s) 457
HinfI GANTC 2 cut(s) 111, 166
HpaII CCGG 1 cut(s) 236
HphI GGTGA 3 cut(s) 166, 287, 568
Hpy166II GTNNAC 3 cut(s) 364, 451, 484
Hpy188I TCNGA 3 cut(s) 323, 522, 601
Hpy188III TCNNGA 4 cut(s) 163, 212, 236, 376
Hpy8I GTNNAC 3 cut(s) 364, 451, 484
Hpy99I CGWCG 1 cut(s) 146
HpyAV CCTTC 3 cut(s) 295, 373, 407
HpyCH4III ACNGT 1 cut(s) 94
HpyCH4V TGCA 1 cut(s) 430
HpyF10VI GCNNNNNNNGC 3 cut(s) 54, 138, 476
HpyF3I CTNAG 3 cut(s) 105, 344, 442
Hsp92II CATG 1 cut(s) 166
Kpn2I TCCGGA 1 cut(s) 235
Ksp22I TGATCA 2 cut(s) 289, 589
Kzo9I GATC 5 cut(s) 268, 280, 289, 492, 589
Lsp1109I GCAGC 2 cut(s) 141, 143
LweI GCATC 3 cut(s) 229, 439, 466
MaeI CTAG 1 cut(s) 273
MaeIII GTNAC 1 cut(s) 94
MalI GATC 5 cut(s) 270, 282, 291, 494, 591
MboI GATC 5 cut(s) 268, 280, 289, 492, 589
MboII GAAGA 2 cut(s) 28, 540
MfeI CAATTG 1 cut(s) 471
MhlI GDGCHC 1 cut(s) 121
MluCI AATT 2 cut(s) 471, 568
MlyI GAGTC 1 cut(s) 120
MroI TCCGGA 1 cut(s) 235
MseI TTAA 3 cut(s) 15, 333, 656
MslI CAYNNNNRTG 1 cut(s) 423
MspI CCGG 1 cut(s) 236
MspR9I CCNGG 1 cut(s) 221
MunI CAATTG 1 cut(s) 471
MvaI CCWGG 1 cut(s) 221
MwoI GCNNNNNNNGC 3 cut(s) 54, 138, 476
NdeII GATC 5 cut(s) 268, 280, 289, 492, 589
NlaIII CATG 1 cut(s) 166
NlaIV GGNNCC 3 cut(s) 118, 119, 234
NmeAIII GCCGAG 1 cut(s) 132
PaeR7I CTCGAG 1 cut(s) 210
PagI TCATGA 1 cut(s) 162
PfeI GAWTC 1 cut(s) 166
PflMI CCANNNNNTGG 1 cut(s) 226
PkrI GCNGC 2 cut(s) 131, 158
PleI GAGTC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 119
Psp6I CCWGG 1 cut(s) 219
PspGI CCWGG 1 cut(s) 219
PspN4I GGNNCC 3 cut(s) 118, 119, 234
PspOMI GGGCCC 1 cut(s) 117
PspPI GGNCC 3 cut(s) 117, 118, 233
PstNI CAGNNNCTG 1 cut(s) 687
RsaI GTAC 1 cut(s) 503
RsaNI GTAC 1 cut(s) 502
RseI CAYNNNNRTG 1 cut(s) 423
SalI GTCGAC 1 cut(s) 482
SaqAI TTAA 3 cut(s) 15, 333, 656
SatI GCNGC 2 cut(s) 130, 157
Sau3AI GATC 5 cut(s) 268, 280, 289, 492, 589
Sau96I GGNCC 3 cut(s) 117, 118, 233
SchI GAGTC 1 cut(s) 120
ScrFI CCNGG 1 cut(s) 221
SduI GDGCHC 1 cut(s) 121
SfaNI GCATC 3 cut(s) 229, 439, 466
Sfr274I CTCGAG 1 cut(s) 210
SinI GGWCC 1 cut(s) 233
SlaI CTCGAG 1 cut(s) 210
SmiMI CAYNNNNRTG 1 cut(s) 423
SmlI CTYRAG 1 cut(s) 210
SmoI CTYRAG 1 cut(s) 210
Sse9I AATT 2 cut(s) 471, 568
SsiI CCGC 4 cut(s) 46, 101, 205, 258
SspMI CTAG 1 cut(s) 273
StyD4I CCNGG 1 cut(s) 219
StyI CCWWGG 1 cut(s) 393
TaaI ACNGT 1 cut(s) 94
TaqI TCGA 4 cut(s) 211, 423, 483, 663
TasI AATT 2 cut(s) 471, 568
TfiI GAWTC 1 cut(s) 166
Tru1I TTAA 3 cut(s) 15, 333, 656
Tru9I TTAA 3 cut(s) 15, 333, 656
TscAI CASTG 2 cut(s) 143, 514
TseI GCWGC 2 cut(s) 129, 156
TspDTI ATGAA 2 cut(s) 151, 426
TspRI CASTG 2 cut(s) 143, 514
Van91I CCANNNNNTGG 1 cut(s) 226
VpaK11BI GGWCC 1 cut(s) 233
XapI RAATTY 1 cut(s) 568
XhoI CTCGAG 1 cut(s) 210
XmiI GTMKAC 1 cut(s) 483
XspI CTAG 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.