pycom07g12720

Golgin candidate

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Forward (+)
14048959 .. 14055030
6072 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g12720.10

Sequence Viewer

Length: 1611 bp
ATGTGGAGCACGATTGCGAACCTGAAGGAGAATCTCAACAAGATGGCTCAGGACGTGCACGACGACGAAGACGACGACGAAGAGTACGAGATCTACGCTATCAATGGAAGCCAAGCTTCTTCATTATCTGATCGGAGGAATTCCCACAGCTTCGCCCATTCCAAGTCCCCCTCGCGCTCTCCGATCGCCAATGGCATCGATTTCCAATTTAGTCCCGAGATTGAACAATACCAAGCGGAAATTAAGAGGCTTCAAGAATCCGAGGCAGAAATAAAAGCATTATCAAAAAACTATGCAGCTCTGTTAAAGGAAAAAGAGGATCAAAATTTCAGACTGAGTAAAGAAAATGGCTTATTGAAACAGAATCTGGACTCAACTACTGCATCTCTGAATGCATCTAGAAACGAAAATCACAAAGCAGCTGCAAATGGAGTCAACGTGCTCAAGGGAAGCAGTAATCAGTTGCCCAACAGACAGCATAAAGTGACAAGTCCAGCAAAAATTGGACACTCTGGACATCAGAAACAGAATGGTGTTGTCCATATAGAAGACAATATAAGTAATGGGATTTCTCAGCTTTCAGATATTCAAAGGAGTGAAAGGGAGCTTGCAGATTTACAAGAAGAGAATAATAGGTCCCCAGCAGCAGTGCTAGCTACTGCTGAGATGAAAAAATTGCGGATAGAACTTGAAAAAGAATGCAATCAGTCGAAAAATATACATCAAAAGTTACAAGAACAACAGAAATTGAATGAAGCAATCCAGGAAGAGCTCAAATTTCTGAAGTTGGATAGAGAAAAGACCTCCGTCGAGATTAGCAAAAAAAGCAATGAGTTAAATGAGAAAATGGCTGAGATAAATCGACTGCAAATGGAGTTGACTAGATGGGGGGATGAAAATGCAAATAATGGTGCAGAGAGTTTGAAAAGGTTAATTGCAAACCTGCAGAAGGAAAATAATAGTCTTAAGGTGGAGAAAAATGAACTTGAGGGTGCCTTGAAAGTGAGCAGGACCGCAAGTGAAATGCAGACGGTAGAATCTTCAGAAAGTTTTCCTGGAAAGGAAGAAATGGAGAAATCGTTACGAGAGTTTGATAAAAATTTGAAGGAAACACGTCTTGAAAGGGACAAAGCATTGCAACAATTGTCACGCCTTAAACAGCATTTGTTAGAAAAGGAATCTGAAGAGTCTGAAAAAATGGATGAAGACAGCAAAATTATTGAAGAACTCCGAGAAAGTAACGAATATCAAAGAGCTCAAATAATACATTTGGAGAAAGCTTTGAAGCAGGCAATAGCAAATCAGGACCAATTCAAGATGACCAACAACAATGAAATTCAGAAATCAAAGGAAGTTATTGATGATCTAAATAAAAGACTTGAAAGCTGTATGAGCACAATAGATGCCAAAAATGTTGAATTTTTGAATCTTCAAACTGCTCTTGGTCAGTACTATGCTGAAATTGAAGCTAAGGAACATTTGGAAGGAGATTTGTCTCGGGCAAGAGAAGAGTCAGCTAAGCTTTCTCGGCTCTTGAAAGAAGCGGATCGATCAGGCGGAAGCATCAAAGAAGGAAAAGGAAGAAATTTTGTCCAAGCTTTCACAAGCTGA

Protein Analysis

537

Amino Acids

61.08

Weight (kDa)

5.49

Isoelectric Point (pI)

59.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 951
AccB1I GGYRCC 1 cut(s) 992
AccII CGCG 1 cut(s) 175
AciI CCGC 5 cut(s) 236, 679, 1014, 1544, 1557
AclWI GGATC 2 cut(s) 327, 1554
AcsI RAATTY 7 cut(s) 139, 325, 776, 1099, 1335, 1418, 1585
AcuI CTGAAG 4 cut(s) 44, 803, 1026, 1203
AfaI GTAC 2 cut(s) 86, 1451
AfiI CCNNNNNNNGG 1 cut(s) 949
AflII CTTAAG 1 cut(s) 965
AflIII ACRYGT 1 cut(s) 1112
AjiI CACGTC 2 cut(s) 55, 1115
AjnI CCWGG 2 cut(s) 762, 1054
Alw21I GWGCWC 6 cut(s) 11, 60, 444, 774, 1258, 1397
Alw26I GTCTC 1 cut(s) 1500
Alw44I GTGCAC 1 cut(s) 56
AlwI GGATC 2 cut(s) 327, 1554
AlwNI CAGNNNCTG 1 cut(s) 367
Ama87I CYCGRG 2 cut(s) 215, 1497
ApaLI GTGCAC 1 cut(s) 56
ApeKI GCWGC 4 cut(s) 296, 419, 422, 644
ApoI RAATTY 7 cut(s) 139, 325, 776, 1099, 1335, 1418, 1585
Asp700I GAANNNNTTC 1 cut(s) 1050
AspLEI GCGC 1 cut(s) 177
AspS9I GGNCC 3 cut(s) 636, 1011, 1306
AsuNHI GCTAGC 1 cut(s) 652
AvaI CYCGRG 2 cut(s) 215, 1497
AvaII GGWCC 3 cut(s) 636, 1011, 1306
BaeGI GKGCMC 1 cut(s) 60
BanI GGYRCC 1 cut(s) 992
BanII GRGCYC 2 cut(s) 774, 1258
BbsI GAAGAC 3 cut(s) 75, 555, 1212
Bbv12I GWGCWC 6 cut(s) 11, 60, 444, 774, 1258, 1397
BbvI GCAGC 4 cut(s) 308, 409, 431, 656
BccI CCATC 2 cut(s) 37, 879
BciT130I CCWGG 2 cut(s) 764, 1056
BcoDI GTCTC 1 cut(s) 1500
BfaI CTAG 3 cut(s) 399, 653, 882
BfmI CTRYAG 1 cut(s) 944
BfrI CTTAAG 1 cut(s) 965
BfuAI ACCTGC 1 cut(s) 951
BglII AGATCT 1 cut(s) 90
BisI GCNGC 4 cut(s) 297, 420, 423, 645
BlpI GCTNAGC 1 cut(s) 1518
BlsI GCNGC 4 cut(s) 298, 421, 424, 646
BmcAI AGTACT 1 cut(s) 1451
Bme1390I CCNGG 2 cut(s) 764, 1056
Bme18I GGWCC 3 cut(s) 636, 1011, 1306
BmeT110I CYCGRG 2 cut(s) 215, 1497
BmgBI CACGTC 2 cut(s) 55, 1115
BmgT120I GGNCC 3 cut(s) 636, 1011, 1306
BmiI GGNNCC 2 cut(s) 638, 994
BmrFI CCNGG 2 cut(s) 764, 1056
BmsI GCATC 5 cut(s) 204, 392, 404, 1393, 1572
BmtI GCTAGC 1 cut(s) 656
BoxI GACNNNNGTC 1 cut(s) 806
BpiI GAAGAC 3 cut(s) 75, 555, 1212
Bpu10I CCTNAGC 2 cut(s) 48, 1470
Bpu1102I GCTNAGC 1 cut(s) 1518
BpuEI CTTGAG 2 cut(s) 428, 1007
Bsa29I ATCGAT 2 cut(s) 198, 1549
BsaJI CCNNGG 1 cut(s) 261
BsaXI ACNNNNNCTCC 4 cut(s) 423, 453, 1064, 1094
Bsc4I CCNNNNNNNGG 1 cut(s) 949
Bse3DI GCAATG 2 cut(s) 835, 1133
BseBI CCWGG 2 cut(s) 764, 1056
BseCI ATCGAT 2 cut(s) 198, 1549
BseDI CCNNGG 1 cut(s) 261
BseGI GGATG 2 cut(s) 898, 1207
BseLI CCNNNNNNNGG 1 cut(s) 949
BseMI GCAATG 2 cut(s) 835, 1133
BseMII CTCAG 5 cut(s) 62, 326, 587, 654, 843
BseSI GKGCMC 1 cut(s) 60
BseXI GCAGC 4 cut(s) 308, 409, 431, 656
BseYI CCCAGC 1 cut(s) 640
BsgI GTGCAG 1 cut(s) 933
Bsh1236I CGCG 1 cut(s) 175
Bsh1285I CGRYCG 1 cut(s) 186
BshNI GGYRCC 1 cut(s) 992
BshVI ATCGAT 2 cut(s) 198, 1549
BsiEI CGRYCG 1 cut(s) 186
BsiHKAI GWGCWC 6 cut(s) 11, 60, 444, 774, 1258, 1397
BsiHKCI CYCGRG 2 cut(s) 215, 1497
BslFI GGGAC 4 cut(s) 151, 198, 622, 1139
BslI CCNNNNNNNGG 1 cut(s) 949
BsmAI GTCTC 1 cut(s) 1500
BsmFI GGGAC 4 cut(s) 151, 198, 622, 1139
BsmI GAATGC 2 cut(s) 397, 704
BsoBI CYCGRG 2 cut(s) 215, 1497
Bsp1286I GDGCHC 6 cut(s) 11, 60, 444, 774, 1258, 1397
Bsp143I GATC 7 cut(s) 90, 130, 183, 319, 1363, 1546, 1550
Bsp1720I GCTNAGC 1 cut(s) 1518
BspACI CCGC 5 cut(s) 236, 679, 1014, 1544, 1557
BspCNI CTCAG 5 cut(s) 61, 327, 586, 655, 844
BspDI ATCGAT 2 cut(s) 198, 1549
BspFNI CGCG 1 cut(s) 175
BspLI GGNNCC 2 cut(s) 638, 994
BspMAI CTGCAG 1 cut(s) 948
BspMI ACCTGC 1 cut(s) 951
BspOI GCTAGC 1 cut(s) 656
BspPI GGATC 2 cut(s) 327, 1554
BspQI GCTCTTC 1 cut(s) 762
BspT107I GGYRCC 1 cut(s) 992
BspTI CTTAAG 1 cut(s) 965
BsrDI GCAATG 2 cut(s) 835, 1133
BssECI CCNNGG 1 cut(s) 261
BssMI GATC 7 cut(s) 90, 130, 183, 319, 1363, 1546, 1550
Bst2UI CCWGG 2 cut(s) 764, 1056
Bst4CI ACNGT 1 cut(s) 1033
Bst6I CTCTTC 5 cut(s) 75, 618, 762, 1179, 1503
BstAFI CTTAAG 1 cut(s) 965
BstC8I GCNNGC 3 cut(s) 609, 654, 1290
BstDEI CTNAG 7 cut(s) 48, 335, 573, 663, 852, 1470, 1518
BstENI CCTNNNNNAGG 1 cut(s) 947
BstF5I GGATG 2 cut(s) 898, 1207
BstFNI CGCG 1 cut(s) 175
BstHHI GCGC 1 cut(s) 177
BstKTI GATC 7 cut(s) 93, 133, 186, 322, 1366, 1549, 1553
BstMAI GTCTC 1 cut(s) 1500
BstMBI GATC 7 cut(s) 90, 130, 183, 319, 1363, 1546, 1550
BstMCI CGRYCG 1 cut(s) 186
BstMWI GCNNNNNNNGC 4 cut(s) 653, 825, 1392, 1528
BstNI CCWGG 2 cut(s) 764, 1056
BstPAI GACNNNNGTC 1 cut(s) 806
BstSCI CCNGG 2 cut(s) 762, 1054
BstSFI CTRYAG 1 cut(s) 944
BstSLI GKGCMC 1 cut(s) 60
BstUI CGCG 1 cut(s) 175
BstV1I GCAGC 4 cut(s) 308, 409, 431, 656
BstV2I GAAGAC 3 cut(s) 75, 555, 1212
BstX2I RGATCY 1 cut(s) 90
BstYI RGATCY 1 cut(s) 90
Bsu15I ATCGAT 2 cut(s) 198, 1549
BsuTUI ATCGAT 2 cut(s) 198, 1549
BtrI CACGTC 2 cut(s) 55, 1115
BtsCI GGATG 2 cut(s) 898, 1207
BtsI GCAGTG 1 cut(s) 654
BtsIMutI CAGTG 1 cut(s) 654
BveI ACCTGC 1 cut(s) 951
Cac8I GCNNGC 3 cut(s) 609, 654, 1290
CaiI CAGNNNCTG 1 cut(s) 367
CfoI GCGC 1 cut(s) 177
Cfr13I GGNCC 3 cut(s) 636, 1011, 1306
ClaI ATCGAT 2 cut(s) 198, 1549
Csp6I GTAC 2 cut(s) 85, 1450
CviQI GTAC 2 cut(s) 85, 1450
DdeI CTNAG 7 cut(s) 48, 335, 573, 663, 852, 1470, 1518
DpnI GATC 7 cut(s) 92, 132, 185, 321, 1365, 1548, 1552
DpnII GATC 7 cut(s) 90, 130, 183, 319, 1363, 1546, 1550
Eam1104I CTCTTC 5 cut(s) 75, 618, 762, 1179, 1503
EarI CTCTTC 5 cut(s) 75, 618, 762, 1179, 1503
EciI GGCGGA 1 cut(s) 1572
Ecl136II GAGCTC 2 cut(s) 772, 1256
Eco24I GRGCYC 2 cut(s) 774, 1258
Eco47I GGWCC 3 cut(s) 636, 1011, 1306
Eco53kI GAGCTC 2 cut(s) 772, 1256
Eco57I CTGAAG 4 cut(s) 44, 803, 1026, 1203
Eco88I CYCGRG 2 cut(s) 215, 1497
EcoICRI GAGCTC 2 cut(s) 772, 1256
EcoNI CCTNNNNNAGG 1 cut(s) 947
EcoO109I RGGNCCY 1 cut(s) 636
EcoRI GAATTC 1 cut(s) 139
EcoRII CCWGG 2 cut(s) 762, 1054
EcoT22I ATGCAT 1 cut(s) 397
EcoT38I GRGCYC 2 cut(s) 774, 1258
FaiI YATR 8 cut(s) 294, 480, 543, 545, 557, 719, 1391, 1455
FalI AAGNNNNNCTT 2 cut(s) 100, 132
FaqI GGGAC 4 cut(s) 151, 198, 622, 1139
Fnu4HI GCNGC 4 cut(s) 297, 420, 423, 645
FokI GGATG 2 cut(s) 905, 1214
FriOI GRGCYC 2 cut(s) 774, 1258
Fsp4HI GCNGC 4 cut(s) 297, 420, 423, 645
FspBI CTAG 3 cut(s) 399, 653, 882
GlaI GCGC 1 cut(s) 176
GluI GCNGC 4 cut(s) 297, 420, 423, 645
GsaI CCCAGC 1 cut(s) 644
HhaI GCGC 1 cut(s) 177
Hin6I GCGC 1 cut(s) 175
HinP1I GCGC 1 cut(s) 175
HincII GTYRAC 2 cut(s) 436, 879
HindII GTYRAC 2 cut(s) 436, 879
HindIII AAGCTT 4 cut(s) 114, 1278, 1520, 1596
Hpy166II GTNNAC 3 cut(s) 58, 436, 879
Hpy8I GTNNAC 3 cut(s) 58, 436, 879
Hpy99I CGWCG 5 cut(s) 65, 68, 77, 80, 812
HpyAV CCTTC 5 cut(s) 19, 943, 1099, 1478, 1565
HpyCH4III ACNGT 1 cut(s) 1033
HpyCH4IV ACGT 3 cut(s) 54, 438, 1114
HpyF10VI GCNNNNNNNGC 4 cut(s) 653, 825, 1392, 1528
HpyF3I CTNAG 7 cut(s) 48, 335, 573, 663, 852, 1470, 1518
HpySE526I ACGT 3 cut(s) 54, 438, 1114
HspAI GCGC 1 cut(s) 175
Kzo9I GATC 7 cut(s) 90, 130, 183, 319, 1363, 1546, 1550
LguI GCTCTTC 1 cut(s) 762
LmnI GCTCC 2 cut(s) 6, 604
Lsp1109I GCAGC 4 cut(s) 308, 409, 431, 656
LweI GCATC 5 cut(s) 204, 392, 404, 1393, 1572
MaeI CTAG 3 cut(s) 399, 653, 882
MaeII ACGT 3 cut(s) 54, 438, 1114
MaeIII GTNAC 5 cut(s) 484, 729, 1080, 1146, 1238
MalI GATC 7 cut(s) 92, 132, 185, 321, 1365, 1548, 1552
MboI GATC 7 cut(s) 90, 130, 183, 319, 1363, 1546, 1550
MfeI CAATTG 1 cut(s) 1142
MflI RGATCY 1 cut(s) 90
MhlI GDGCHC 6 cut(s) 11, 60, 444, 774, 1258, 1397
MlyI GAGTC 4 cut(s) 365, 441, 1196, 1520
MmeI TCCRAC 1 cut(s) 768
MnlI CCTC 7 cut(s) 129, 181, 240, 256, 310, 814, 982
Mph1103I ATGCAT 1 cut(s) 397
MroXI GAANNNNTTC 1 cut(s) 1050
MseI TTAA 6 cut(s) 243, 305, 836, 932, 966, 1155
MspA1I CMGCKG 1 cut(s) 422
MspCI CTTAAG 1 cut(s) 965
MspR9I CCNGG 2 cut(s) 764, 1056
MunI CAATTG 1 cut(s) 1142
Mva1269I GAATGC 2 cut(s) 397, 704
MvaI CCWGG 2 cut(s) 764, 1056
MvnI CGCG 1 cut(s) 175
MwoI GCNNNNNNNGC 4 cut(s) 653, 825, 1392, 1528
NdeII GATC 7 cut(s) 90, 130, 183, 319, 1363, 1546, 1550
NheI GCTAGC 1 cut(s) 652
NlaIV GGNNCC 2 cut(s) 638, 994
NmeAIII GCCGAG 1 cut(s) 1507
NmuCI GTSAC 2 cut(s) 484, 1146
NsiI ATGCAT 1 cut(s) 397
PciSI GCTCTTC 1 cut(s) 762
PcsI WCGNNNNNNNCGW 5 cut(s) 60, 69, 72, 84, 179
PctI GAATGC 2 cut(s) 397, 704
PdmI GAANNNNTTC 1 cut(s) 1050
PfeI GAWTC 6 cut(s) 31, 257, 364, 1037, 1178, 1426
PfoI TCCNGGA 2 cut(s) 762, 1054
PkrI GCNGC 4 cut(s) 298, 421, 424, 646
Ple19I CGATCG 1 cut(s) 186
PleI GAGTC 4 cut(s) 365, 440, 1195, 1519
PpsI GAGTC 4 cut(s) 365, 440, 1195, 1519
PpuMI RGGWCCY 1 cut(s) 636
PshAI GACNNNNGTC 1 cut(s) 806
Psp124BI GAGCTC 2 cut(s) 774, 1258
Psp5II RGGWCCY 1 cut(s) 636
Psp6I CCWGG 2 cut(s) 762, 1054
PspFI CCCAGC 1 cut(s) 640
PspGI CCWGG 2 cut(s) 762, 1054
PspN4I GGNNCC 2 cut(s) 638, 994
PspPI GGNCC 3 cut(s) 636, 1011, 1306
PspPPI RGGWCCY 1 cut(s) 636
PstI CTGCAG 1 cut(s) 948
PstNI CAGNNNCTG 1 cut(s) 367
PsuI RGATCY 1 cut(s) 90
PvuI CGATCG 1 cut(s) 186
PvuII CAGCTG 1 cut(s) 422
RsaI GTAC 2 cut(s) 86, 1451
RsaNI GTAC 2 cut(s) 85, 1450
SacI GAGCTC 2 cut(s) 774, 1258
SapI GCTCTTC 1 cut(s) 762
SaqAI TTAA 6 cut(s) 243, 305, 836, 932, 966, 1155
SatI GCNGC 4 cut(s) 297, 420, 423, 645
Sau3AI GATC 7 cut(s) 90, 130, 183, 319, 1363, 1546, 1550
Sau96I GGNCC 3 cut(s) 636, 1011, 1306
ScaI AGTACT 1 cut(s) 1451
SchI GAGTC 4 cut(s) 365, 441, 1196, 1520
ScrFI CCNGG 2 cut(s) 764, 1056
SduI GDGCHC 6 cut(s) 11, 60, 444, 774, 1258, 1397
SfaNI GCATC 5 cut(s) 204, 392, 404, 1393, 1572
SfcI CTRYAG 1 cut(s) 944
SinI GGWCC 3 cut(s) 636, 1011, 1306
SmlI CTYRAG 3 cut(s) 443, 965, 986
SmoI CTYRAG 3 cut(s) 443, 965, 986
SsiI CCGC 5 cut(s) 236, 679, 1014, 1544, 1557
SspMI CTAG 3 cut(s) 399, 653, 882
SstI GAGCTC 2 cut(s) 774, 1258
StyD4I CCNGG 2 cut(s) 762, 1054
TaaI ACNGT 1 cut(s) 1033
TaiI ACGT 3 cut(s) 57, 441, 1117
TaqI TCGA 5 cut(s) 198, 710, 810, 862, 1549
TatI WGTACW 1 cut(s) 1449
TfiI GAWTC 6 cut(s) 31, 257, 364, 1037, 1178, 1426
Tru1I TTAA 6 cut(s) 243, 305, 836, 932, 966, 1155
Tru9I TTAA 6 cut(s) 243, 305, 836, 932, 966, 1155
TscAI CASTG 1 cut(s) 654
TseFI GTSAC 2 cut(s) 484, 1146
TseI GCWGC 4 cut(s) 296, 419, 422, 644
Tsp45I GTSAC 2 cut(s) 484, 1146
TspDTI ATGAA 7 cut(s) 111, 683, 768, 909, 996, 1218, 1347
TspGWI ACGGA 1 cut(s) 796
TspRI CASTG 1 cut(s) 654
Vha464I CTTAAG 1 cut(s) 965
VneI GTGCAC 1 cut(s) 56
VpaK11BI GGWCC 3 cut(s) 636, 1011, 1306
XagI CCTNNNNNAGG 1 cut(s) 947
XapI RAATTY 7 cut(s) 139, 325, 776, 1099, 1335, 1418, 1585
XbaI TCTAGA 1 cut(s) 398
XmnI GAANNNNTTC 1 cut(s) 1050
XspI CTAG 3 cut(s) 399, 653, 882
ZrmI AGTACT 1 cut(s) 1451
Zsp2I ATGCAT 1 cut(s) 397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.