Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0004087

Physical Location & Seq

Genomic Coordinates Forward (+)

13120030 .. 13125042

Gene Structure 5013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG149000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGTCATTCGATGAATGCGAGCTTCCCTCCGACGTATTGTCCTCAGTGGCAGGTATGTGTGTCTTGACTGGCTGTGATTTCCTTCGATCTGTTCCTGGAATTGGGATTGGTAAAGCTTATGCCTTGGTTTCTAAGTATAGGGATCAAATTTCTATATTGAATAAAGAGAATGGCTCATTGAAACAAAATCTGGACACAACTATTGCATCTCTAAATGCCTCTAGAATTGAAAACTACAAAGCGGCAGCAAATGGGACCAACTTGCACAAGGGAAGTAGTAATCAGTCACCCAACCGACAACAAAGATTGACAGGTCATGCAAAAACCAGCTACTCTGGACACCAGAAACAAAATGGTGTTGTCTATACACAAAATGGGAATGGGATAAGCAATGGGATTGCGCATCTTTCAAACATGCAGGGGAATGAAAGGGAGCATCTACAATTCAGTATCATCTCTTTATCAGCATATATTGCAGGATTGGGGTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0006996 GO:0007030 GO:0008150 GO:0009987 GO:0010256 GO:0012505 GO:0016043 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071840 GO:0097708

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

163

Amino Acids

17.42

Weight (kDa)

8.81

Isoelectric Point (pI)

29.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46180 AT3G61570 AT3G61570
fragaria_vesca	FvH4_7g15532 FvH4_7g15532 FvH4_7g15532 FvH4_7g15532 FvH4_7g15532
malus_domestica	MD01G1072600.v1.1 MD07G1130300.v1.1
prunus_persica	Prupe.2G178900_v2.0.a1 Prupe.2G178900_v2.0.a1 Prupe.2G178900_v2.0.a1
pyrus_communis	pycom01g10180 pycom07g12720
rosa_chinensis	RchiOBHm_Chr1g0357861
rosa_laevigata	RLG00000027990
rosa_multiflora	Rmu_sc0007456.1_g000001 Rmu_sc0007456.1_g000005
rosa_roxburghii	Rroxscaffold_4G00298400 Rroxscaffold_4G00298440 Rroxscaffold_7G00215440
rosa_rugosa	Rorug01G0259100 Rorug01G0259200
rosa_samantha	Rh1AG273100 Rh1BG240400 Rh1CG256900 Rh1DG268700 Rh3AG149000 Rh3BG172200 Rh4AG248000 Rh5AG428400
rosa_wichuraiana	Rw1G024390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	402
Acc36I	ACCTGC	1 cut(s)	41
AciI	CCGC	1 cut(s)	242
AclWI	GGATC	1 cut(s)	150
AcsI	RAATTY	1 cut(s)	147
AfiI	CCNNNNNNNGG	1 cut(s)	101
AgsI	TTSAA	4 cut(s)	160, 181, 230, 411
AhdI	GACNNNNNGTC	1 cut(s)	37
AjnI	CCWGG	1 cut(s)	94
AluBI	AGCT	3 cut(s)	22, 116, 330
AluI	AGCT	3 cut(s)	22, 116, 330
AlwI	GGATC	1 cut(s)	150
ApeKI	GCWGC	1 cut(s)	245
ApoI	RAATTY	1 cut(s)	147
AspLEI	GCGC	1 cut(s)	403
AspS9I	GGNCC	2 cut(s)	255, 486
AsuHPI	GGTGA	1 cut(s)	279
AvaII	GGWCC	2 cut(s)	255, 486
BbvI	GCAGC	1 cut(s)	257
BciT130I	CCWGG	1 cut(s)	96
BfaI	CTAG	1 cut(s)	222
BfuAI	ACCTGC	1 cut(s)	41
BisI	GCNGC	2 cut(s)	243, 246
BlsI	GCNGC	2 cut(s)	244, 247
Bme1390I	CCNGG	1 cut(s)	96
Bme18I	GGWCC	2 cut(s)	255, 486
BmeRI	GACNNNNNGTC	1 cut(s)	37
BmgT120I	GGNCC	2 cut(s)	255, 486
BmiI	GGNNCC	2 cut(s)	256, 487
BmrFI	CCNGG	1 cut(s)	96
BmsI	GCATC	3 cut(s)	215, 412, 445
BplI	GAGNNNNNCTC	4 cut(s)	11, 43, 158, 190
BsaJI	CCNNGG	1 cut(s)	123
Bsc4I	CCNNNNNNNGG	1 cut(s)	101
Bse1I	ACTGG	1 cut(s)	73
Bse3DI	GCAATG	1 cut(s)	397
BseBI	CCWGG	1 cut(s)	96
BseDI	CCNNGG	1 cut(s)	123
BseLI	CCNNNNNNNGG	1 cut(s)	101
BseMI	GCAATG	1 cut(s)	397
BseMII	CTCAG	1 cut(s)	57
BseNI	ACTGG	1 cut(s)	73
BseXI	GCAGC	1 cut(s)	257
BslFI	GGGAC	1 cut(s)	268
BslI	CCNNNNNNNGG	1 cut(s)	101
BsmFI	GGGAC	1 cut(s)	268
BsmI	GAATGC	1 cut(s)	20
Bsp143I	GATC	2 cut(s)	86, 142
BspACI	CCGC	1 cut(s)	242
BspCNI	CTCAG	1 cut(s)	56
BspLI	GGNNCC	2 cut(s)	256, 487
BspMI	ACCTGC	1 cut(s)	41
BspPI	GGATC	1 cut(s)	150
BsrDI	GCAATG	1 cut(s)	397
BsrI	ACTGG	1 cut(s)	73
BssECI	CCNNGG	1 cut(s)	123
BssMI	GATC	2 cut(s)	86, 142
BssT1I	CCWWGG	1 cut(s)	123
Bst2UI	CCWGG	1 cut(s)	96
BstAPI	GCANNNNNTGC	1 cut(s)	473
BstC8I	GCNNGC	1 cut(s)	20
BstDEI	CTNAG	2 cut(s)	43, 132
BstHHI	GCGC	1 cut(s)	403
BstKTI	GATC	2 cut(s)	89, 145
BstMBI	GATC	2 cut(s)	86, 142
BstMWI	GCNNNNNNNGC	1 cut(s)	473
BstNI	CCWGG	1 cut(s)	96
BstNSI	RCATGY	1 cut(s)	418
BstSCI	CCNGG	1 cut(s)	94
BstV1I	GCAGC	1 cut(s)	257
BtsIMutI	CAGTG	1 cut(s)	51
BveI	ACCTGC	1 cut(s)	41
Cac8I	GCNNGC	1 cut(s)	20
CfoI	GCGC	1 cut(s)	403
Cfr13I	GGNCC	2 cut(s)	255, 486
CviAII	CATG	2 cut(s)	317, 415
CviJI	RGCY	5 cut(s)	22, 72, 116, 174, 330
CviKI_1	RGCY	5 cut(s)	22, 72, 116, 174, 330
DdeI	CTNAG	2 cut(s)	43, 132
DpnI	GATC	2 cut(s)	88, 144
DpnII	GATC	2 cut(s)	86, 142
DriI	GACNNNNNGTC	1 cut(s)	37
Eam1105I	GACNNNNNGTC	1 cut(s)	37
Eco130I	CCWWGG	1 cut(s)	123
Eco47I	GGWCC	2 cut(s)	255, 486
EcoO109I	RGGNCCY	1 cut(s)	486
EcoRII	CCWGG	1 cut(s)	94
EcoT14I	CCWWGG	1 cut(s)	123
ErhI	CCWWGG	1 cut(s)	123
FaeI	CATG	2 cut(s)	320, 418
FaiI	YATR	9 cut(s)	56, 120, 138, 155, 318, 366, 416, 469, 471
FaqI	GGGAC	1 cut(s)	268
FatI	CATG	2 cut(s)	316, 414
Fnu4HI	GCNGC	2 cut(s)	243, 246
Fsp4HI	GCNGC	2 cut(s)	243, 246
FspBI	CTAG	1 cut(s)	222
FspI	TGCGCA	1 cut(s)	402
GlaI	GCGC	1 cut(s)	402
GluI	GCNGC	2 cut(s)	243, 246
HhaI	GCGC	1 cut(s)	403
Hin1II	CATG	2 cut(s)	320, 418
Hin6I	GCGC	1 cut(s)	401
HinP1I	GCGC	1 cut(s)	401
HindIII	AAGCTT	1 cut(s)	114
HphI	GGTGA	1 cut(s)	279
Hpy188I	TCNGA	1 cut(s)	31
Hpy188III	TCNNGA	4 cut(s)	64, 191, 222, 336
Hpy99I	CGWCG	1 cut(s)	35
HpyAV	CCTTC	1 cut(s)	92
HpyCH4IV	ACGT	1 cut(s)	33
HpyCH4V	TGCA	5 cut(s)	206, 265, 320, 418, 476
HpyF10VI	GCNNNNNNNGC	1 cut(s)	473
HpyF3I	CTNAG	2 cut(s)	43, 132
HpySE526I	ACGT	1 cut(s)	33
Hsp92II	CATG	2 cut(s)	320, 418
HspAI	GCGC	1 cut(s)	401
Kzo9I	GATC	2 cut(s)	86, 142
LmnI	GCTCC	1 cut(s)	433
Lsp1109I	GCAGC	1 cut(s)	257
LweI	GCATC	3 cut(s)	215, 412, 445
MaeI	CTAG	1 cut(s)	222
MaeII	ACGT	1 cut(s)	33
MaeIII	GTNAC	1 cut(s)	285
MalI	GATC	2 cut(s)	88, 144
MboI	GATC	2 cut(s)	86, 142
MluCI	AATT	4 cut(s)	99, 147, 225, 443
MmeI	TCCRAC	1 cut(s)	54
MnlI	CCTC	3 cut(s)	37, 52, 229
MspR9I	CCNGG	1 cut(s)	96
Mva1269I	GAATGC	1 cut(s)	20
MvaI	CCWGG	1 cut(s)	96
MwoI	GCNNNNNNNGC	1 cut(s)	473
NdeII	GATC	2 cut(s)	86, 142
NlaIII	CATG	2 cut(s)	320, 418
NlaIV	GGNNCC	2 cut(s)	256, 487
NmuCI	GTSAC	1 cut(s)	285
NsbI	TGCGCA	1 cut(s)	402
NspI	RCATGY	1 cut(s)	418
PcsI	WCGNNNNNNNCGW	1 cut(s)	15
PctI	GAATGC	1 cut(s)	20
PfoI	TCCNGGA	1 cut(s)	94
PkrI	GCNGC	2 cut(s)	244, 247
PpuMI	RGGWCCY	1 cut(s)	486
Psp5II	RGGWCCY	1 cut(s)	486
Psp6I	CCWGG	1 cut(s)	94
PspGI	CCWGG	1 cut(s)	94
PspN4I	GGNNCC	2 cut(s)	256, 487
PspPI	GGNCC	2 cut(s)	255, 486
PspPPI	RGGWCCY	1 cut(s)	486
SatI	GCNGC	2 cut(s)	243, 246
Sau3AI	GATC	2 cut(s)	86, 142
Sau96I	GGNCC	2 cut(s)	255, 486
ScrFI	CCNGG	1 cut(s)	96
SetI	ASST	6 cut(s)	24, 36, 55, 118, 316, 332
SfaNI	GCATC	3 cut(s)	215, 412, 445
SinI	GGWCC	2 cut(s)	255, 486
Sse9I	AATT	4 cut(s)	99, 147, 225, 443
SsiI	CCGC	1 cut(s)	242
SspMI	CTAG	1 cut(s)	222
StyD4I	CCNGG	1 cut(s)	94
StyI	CCWWGG	1 cut(s)	123
TaiI	ACGT	1 cut(s)	36
TaqI	TCGA	2 cut(s)	9, 85
TasI	AATT	4 cut(s)	99, 147, 225, 443
TauI	GCSGC	1 cut(s)	245
TscAI	CASTG	1 cut(s)	51
TseFI	GTSAC	1 cut(s)	285
TseI	GCWGC	1 cut(s)	245
Tsp45I	GTSAC	1 cut(s)	285
TspDTI	ATGAA	2 cut(s)	27, 441
TspRI	CASTG	1 cut(s)	51
VpaK11BI	GGWCC	2 cut(s)	255, 486
XapI	RAATTY	1 cut(s)	147
XbaI	TCTAGA	1 cut(s)	221
XceI	RCATGY	1 cut(s)	418
XcmI	CCANNNNNNNNNTGG	1 cut(s)	350
XspI	CTAG	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.