Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0004087

Physical Location & Seq

Genomic Coordinates Forward (+)

18267206 .. 18268541

Gene Structure 1336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00298400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGATGTGGGGGACGATTGCCAACCTCAAAGAGAATCTCAACAAGATCGCGCAGGACGTGCACGACTACAGCGACGATGAGGAGTTTGAGATCTACGCCTCAACCAATGGAGGAGGCGGCCAAGGTTCGTCCATTTCTGATCGGAGAAACTCCCACAGCTTCGCGCATTCCAAGTCGTCGTCGTCGCGCTCGCCAGTGTCGAATGGCGTCCGCGGCTCCGGTGTTAGTCCAGAGATTAAATCTGAGGCAGAAATGCGAGGCTCTCTGGACGAACGGGCCTCTCATCTCAAGGACATGGAGCTTGAAGAGAAACACCTCGAGTCCCAGATCAAAAACCTTCAGGCCCAATTAGCCGCAGTAAGGGCTGGGATTGCTCAAGAGGAAGTGCAACTGGAACAATCTTGGCCGCTTTTGAGGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0006996 GO:0007030 GO:0008150 GO:0009987 GO:0010256 GO:0012505 GO:0016043 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071840 GO:0097708

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

140

Amino Acids

15.48

Weight (kDa)

5.2

Isoelectric Point (pI)

57.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46180 AT3G61570 AT3G61570
fragaria_vesca	FvH4_7g15532 FvH4_7g15532 FvH4_7g15532 FvH4_7g15532 FvH4_7g15532
malus_domestica	MD01G1072600.v1.1 MD07G1130300.v1.1
prunus_persica	Prupe.2G178900_v2.0.a1 Prupe.2G178900_v2.0.a1 Prupe.2G178900_v2.0.a1
pyrus_communis	pycom01g10180 pycom07g12720
rosa_chinensis	RchiOBHm_Chr1g0357861
rosa_laevigata	RLG00000027990
rosa_multiflora	Rmu_sc0007456.1_g000001 Rmu_sc0007456.1_g000005
rosa_roxburghii	Rroxscaffold_4G00298400 Rroxscaffold_4G00298440 Rroxscaffold_7G00215440
rosa_rugosa	Rorug01G0259100 Rorug01G0259200
rosa_samantha	Rh1AG273100 Rh1BG240400 Rh1CG256900 Rh1DG268700 Rh3AG149000 Rh3BG172200 Rh4AG248000 Rh5AG428400
rosa_wichuraiana	Rw1G024390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	4 cut(s)	50, 164, 187, 213
AciI	CCGC	5 cut(s)	117, 211, 213, 354, 407
AcoI	YGGCCR	2 cut(s)	118, 404
AcuI	CTGAAG	1 cut(s)	323
AcyI	GRCGYC	1 cut(s)	207
AfiI	CCNNNNNNNGG	1 cut(s)	360
AgsI	TTSAA	1 cut(s)	305
AjiI	CACGTC	1 cut(s)	58
AluBI	AGCT	2 cut(s)	159, 301
AluI	AGCT	2 cut(s)	159, 301
Alw21I	GWGCWC	1 cut(s)	63
Alw44I	GTGCAC	1 cut(s)	59
Ama87I	CYCGRG	1 cut(s)	317
AoxI	GGCC	4 cut(s)	118, 276, 342, 404
ApaLI	GTGCAC	1 cut(s)	59
AspLEI	GCGC	3 cut(s)	52, 166, 189
AspS9I	GGNCC	2 cut(s)	276, 343
AvaI	CYCGRG	1 cut(s)	317
BaeGI	GKGCMC	1 cut(s)	63
Bbv12I	GWGCWC	1 cut(s)	63
BfmI	CTRYAG	1 cut(s)	67
BglII	AGATCT	1 cut(s)	90
BisI	GCNGC	4 cut(s)	118, 214, 354, 407
BlsI	GCNGC	4 cut(s)	119, 215, 355, 408
BmeT110I	CYCGRG	1 cut(s)	317
BmgBI	CACGTC	1 cut(s)	58
BmgT120I	GGNCC	2 cut(s)	276, 343
BmiI	GGNNCC	1 cut(s)	217
BpuEI	CTTGAG	2 cut(s)	272, 360
BsaHI	GRCGYC	1 cut(s)	207
BsaJI	CCNNGG	2 cut(s)	121, 211
BsaWI	WCCGGW	1 cut(s)	218
Bsc4I	CCNNNNNNNGG	1 cut(s)	360
Bse1I	ACTGG	2 cut(s)	194, 396
BseDI	CCNNGG	2 cut(s)	121, 211
BseLI	CCNNNNNNNGG	1 cut(s)	360
BseMII	CTCAG	1 cut(s)	234
BseNI	ACTGG	2 cut(s)	194, 396
BseRI	GAGGAG	2 cut(s)	95, 126
BseSI	GKGCMC	1 cut(s)	63
BseYI	CCCAGC	1 cut(s)	365
Bsh1236I	CGCG	4 cut(s)	50, 164, 187, 213
BshFI	GGCC	4 cut(s)	120, 278, 344, 406
BsiHKAI	GWGCWC	1 cut(s)	63
BsiHKCI	CYCGRG	1 cut(s)	317
BsiSI	CCGG	1 cut(s)	219
BslFI	GGGAC	2 cut(s)	25, 307
BslI	CCNNNNNNNGG	1 cut(s)	360
BsmFI	GGGAC	2 cut(s)	25, 307
BsmI	GAATGC	1 cut(s)	166
BsnI	GGCC	4 cut(s)	120, 278, 344, 406
BsoBI	CYCGRG	1 cut(s)	317
Bsp1286I	GDGCHC	1 cut(s)	63
Bsp143I	GATC	4 cut(s)	45, 90, 139, 327
BspACI	CCGC	5 cut(s)	117, 211, 213, 354, 407
BspANI	GGCC	4 cut(s)	120, 278, 344, 406
BspCNI	CTCAG	1 cut(s)	235
BspFNI	CGCG	4 cut(s)	50, 164, 187, 213
BspLI	GGNNCC	1 cut(s)	217
BsrI	ACTGG	2 cut(s)	194, 396
BssECI	CCNNGG	2 cut(s)	121, 211
BssMI	GATC	4 cut(s)	45, 90, 139, 327
BssNI	GRCGYC	1 cut(s)	207
BssT1I	CCWWGG	1 cut(s)	121
Bst6I	CTCTTC	1 cut(s)	300
BstACI	GRCGYC	1 cut(s)	207
BstAPI	GCANNNNNTGC	1 cut(s)	58
BstC8I	GCNNGC	1 cut(s)	191
BstDEI	CTNAG	1 cut(s)	243
BstDSI	CCRYGG	1 cut(s)	211
BstFNI	CGCG	4 cut(s)	50, 164, 187, 213
BstHHI	GCGC	3 cut(s)	52, 166, 189
BstKTI	GATC	4 cut(s)	48, 93, 142, 330
BstMBI	GATC	4 cut(s)	45, 90, 139, 327
BstMWI	GCNNNNNNNGC	5 cut(s)	58, 213, 350, 362, 371
BstSFI	CTRYAG	1 cut(s)	67
BstSLI	GKGCMC	1 cut(s)	63
BstUI	CGCG	4 cut(s)	50, 164, 187, 213
BstX2I	RGATCY	1 cut(s)	90
BstYI	RGATCY	1 cut(s)	90
BsuRI	GGCC	4 cut(s)	120, 278, 344, 406
BtgI	CCRYGG	1 cut(s)	211
BtrI	CACGTC	1 cut(s)	58
BtsIMutI	CAGTG	1 cut(s)	201
Cac8I	GCNNGC	1 cut(s)	191
CfoI	GCGC	3 cut(s)	52, 166, 189
Cfr13I	GGNCC	2 cut(s)	276, 343
Cfr42I	CCGCGG	1 cut(s)	214
CseI	GACGC	1 cut(s)	196
CviAII	CATG	1 cut(s)	295
DdeI	CTNAG	1 cut(s)	243
DpnI	GATC	4 cut(s)	47, 92, 141, 329
DpnII	GATC	4 cut(s)	45, 90, 139, 327
EaeI	YGGCCR	2 cut(s)	118, 404
Eam1104I	CTCTTC	1 cut(s)	300
EarI	CTCTTC	1 cut(s)	300
Eco130I	CCWWGG	1 cut(s)	121
Eco57I	CTGAAG	1 cut(s)	323
Eco88I	CYCGRG	1 cut(s)	317
EcoT14I	CCWWGG	1 cut(s)	121
ErhI	CCWWGG	1 cut(s)	121
FaeI	CATG	1 cut(s)	298
FaiI	YATR	1 cut(s)	296
FaqI	GGGAC	2 cut(s)	25, 307
FatI	CATG	1 cut(s)	294
Fnu4HI	GCNGC	4 cut(s)	118, 214, 354, 407
Fsp4HI	GCNGC	4 cut(s)	118, 214, 354, 407
GlaI	GCGC	3 cut(s)	51, 165, 188
GluI	GCNGC	4 cut(s)	118, 214, 354, 407
GsaI	CCCAGC	1 cut(s)	369
HaeIII	GGCC	4 cut(s)	120, 278, 344, 406
HapII	CCGG	1 cut(s)	219
HgaI	GACGC	1 cut(s)	196
HhaI	GCGC	3 cut(s)	52, 166, 189
Hin1I	GRCGYC	1 cut(s)	207
Hin1II	CATG	1 cut(s)	298
Hin6I	GCGC	3 cut(s)	50, 164, 187
HinP1I	GCGC	3 cut(s)	50, 164, 187
HinfI	GANTC	2 cut(s)	34, 320
HpaII	CCGG	1 cut(s)	219
Hpy166II	GTNNAC	1 cut(s)	61
Hpy188I	TCNGA	3 cut(s)	139, 144, 244
Hpy188III	TCNNGA	3 cut(s)	230, 266, 377
Hpy8I	GTNNAC	1 cut(s)	61
Hpy99I	CGWCG	4 cut(s)	77, 181, 184, 187
HpyAV	CCTTC	1 cut(s)	347
HpyCH4IV	ACGT	1 cut(s)	57
HpyCH4V	TGCA	2 cut(s)	61, 388
HpyF10VI	GCNNNNNNNGC	5 cut(s)	58, 213, 350, 362, 371
HpyF3I	CTNAG	1 cut(s)	243
HpySE526I	ACGT	1 cut(s)	57
Hsp92I	GRCGYC	1 cut(s)	207
Hsp92II	CATG	1 cut(s)	298
HspAI	GCGC	3 cut(s)	50, 164, 187
KspI	CCGCGG	1 cut(s)	214
Kzo9I	GATC	4 cut(s)	45, 90, 139, 327
LmnI	GCTCC	2 cut(s)	221, 298
LpnPI	CCDG	9 cut(s)	38, 207, 232, 243, 251, 326, 338, 351, 377
MaeII	ACGT	1 cut(s)	57
MalI	GATC	4 cut(s)	47, 92, 141, 329
MboI	GATC	4 cut(s)	45, 90, 139, 327
MboII	GAAGA	1 cut(s)	317
MflI	RGATCY	1 cut(s)	90
MhlI	GDGCHC	1 cut(s)	63
MluCI	AATT	1 cut(s)	347
MlyI	GAGTC	1 cut(s)	329
MseI	TTAA	1 cut(s)	237
MspA1I	CMGCKG	1 cut(s)	213
MspI	CCGG	1 cut(s)	219
Mva1269I	GAATGC	1 cut(s)	166
MvnI	CGCG	4 cut(s)	50, 164, 187, 213
MwoI	GCNNNNNNNGC	5 cut(s)	58, 213, 350, 362, 371
NdeII	GATC	4 cut(s)	45, 90, 139, 327
NlaIII	CATG	1 cut(s)	298
NlaIV	GGNNCC	1 cut(s)	217
PaeR7I	CTCGAG	1 cut(s)	317
PcsI	WCGNNNNNNNCGW	3 cut(s)	54, 69, 197
PctI	GAATGC	1 cut(s)	166
PfeI	GAWTC	1 cut(s)	34
PkrI	GCNGC	4 cut(s)	119, 215, 355, 408
PleI	GAGTC	1 cut(s)	328
PpsI	GAGTC	1 cut(s)	328
PspFI	CCCAGC	1 cut(s)	365
PspN4I	GGNNCC	1 cut(s)	217
PspPI	GGNCC	2 cut(s)	276, 343
PspXI	VCTCGAGB	1 cut(s)	317
PsuI	RGATCY	1 cut(s)	90
SacII	CCGCGG	1 cut(s)	214
SaqAI	TTAA	1 cut(s)	237
SatI	GCNGC	4 cut(s)	118, 214, 354, 407
Sau3AI	GATC	4 cut(s)	45, 90, 139, 327
Sau96I	GGNCC	2 cut(s)	276, 343
SchI	GAGTC	1 cut(s)	329
SduI	GDGCHC	1 cut(s)	63
SetI	ASST	8 cut(s)	27, 60, 127, 161, 303, 318, 339, 419
SfcI	CTRYAG	1 cut(s)	67
Sfr274I	CTCGAG	1 cut(s)	317
Sfr303I	CCGCGG	1 cut(s)	214
SgrBI	CCGCGG	1 cut(s)	214
SlaI	CTCGAG	1 cut(s)	317
SmlI	CTYRAG	3 cut(s)	287, 317, 375
SmoI	CTYRAG	3 cut(s)	287, 317, 375
Sse9I	AATT	1 cut(s)	347
SsiI	CCGC	5 cut(s)	117, 211, 213, 354, 407
StyI	CCWWGG	1 cut(s)	121
TaiI	ACGT	1 cut(s)	60
TaqI	TCGA	2 cut(s)	200, 318
TasI	AATT	1 cut(s)	347
TauI	GCSGC	4 cut(s)	120, 216, 356, 409
TfiI	GAWTC	1 cut(s)	34
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TscAI	CASTG	1 cut(s)	201
TspRI	CASTG	1 cut(s)	201
VneI	GTGCAC	1 cut(s)	59
XhoI	CTCGAG	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.