Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007456.1

Orthogroup ID

OG0004087

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 3896

Gene Structure 3896 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007456.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

atgtgggggacgattgccaacctcaaagagaatctcaacaagatcgcgcaggacgtgcacgacgacagcgacgaagaggagtttgagatctacgcctcaaccaatggaggaggcggccaaggttcgtccatttctgatcggagaaactcccacagcttcgcgcattccaagtcgccgtcgtcgcgctcgcctgtgtcgaatggcgtcggcggctccggtgttagtccagagattgaacaataccgagctgagattaagagacttcaggaatctgaggcagaaattaaagcattatcaaaaaactatgcagctttgttaaaggaaaaggaggatcaaatttctagattgaataaagaaaatggctcattgaaacaaaatctggacacaactactgcatctctaaatgcctctagaattgaaaactacaaagcggcagcaaatgggaccaacttgcacaagggaagtagtactcagtcacccaaccgacagcaaagatcgacaggtcaagcaaaaaccagctattctggacaccagaaacagaatggtattgtctatacacaggatgggaatgggataagcaatgggattgcgcatctttcagacatgcaggggaatgaaagggagcttgcagatttactaggacttgagatgaagcaattgcggatggagctagaaaaagaacacaaccagttggaaaatgtacagagaaagttacaagaggagcagaaattgaatgggaccatccaggaagagctcaaatttattaagttggatagagaaaaaacctccattgagatgagcaaaatacacaatgaattgaatgacaaaacgtctgagataagtcgattgcaaatggaattgaataggcgggaggatgtaaatgcagagaactttaaaagattgatcgcaaccctggagaaggaaaacaatagtcttaagatggagaagaatgaacttgaggcagctttgagaacgagcaggacctcaactgataaaaaacccttagatgcatcagaaagttttcctgggaaggaagaaatggagctatctttgcgaaaatttgatagtgatttgaaggtagcacgccaggaaagggacaaagccttgcaagaattgaaacgcctcaaacagcatttattagaaaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0006996 GO:0007030 GO:0008150 GO:0009987 GO:0010256 GO:0012505 GO:0016043 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071840 GO:0097708

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

382

Amino Acids

43.1

Weight (kDa)

6.22

Isoelectric Point (pI)

50.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46180 AT3G61570 AT3G61570
fragaria_vesca	FvH4_7g15532 FvH4_7g15532 FvH4_7g15532 FvH4_7g15532 FvH4_7g15532
malus_domestica	MD01G1072600.v1.1 MD07G1130300.v1.1
prunus_persica	Prupe.2G178900_v2.0.a1 Prupe.2G178900_v2.0.a1 Prupe.2G178900_v2.0.a1
pyrus_communis	pycom01g10180 pycom07g12720
rosa_chinensis	RchiOBHm_Chr1g0357861
rosa_laevigata	RLG00000027990
rosa_multiflora	Rmu_sc0007456.1_g000001 Rmu_sc0007456.1_g000005
rosa_roxburghii	Rroxscaffold_4G00298400 Rroxscaffold_4G00298440 Rroxscaffold_7G00215440
rosa_rugosa	Rorug01G0259100 Rorug01G0259200
rosa_samantha	Rh1AG273100 Rh1BG240400 Rh1CG256900 Rh1DG268700 Rh3AG149000 Rh3BG172200 Rh4AG248000 Rh5AG428400
rosa_wichuraiana	Rw1G024390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	591
AccII	CGCG	3 cut(s)	47, 161, 184
AciI	CCGC	5 cut(s)	114, 210, 431, 661, 868
AclWI	GGATC	1 cut(s)	339
AcoI	YGGCCR	1 cut(s)	115
AcsI	RAATTY	3 cut(s)	336, 758, 1058
AcuI	CTGAAG	1 cut(s)	248
AcyI	GRCGYC	1 cut(s)	204
AfaI	GTAC	2 cut(s)	469, 702
AfiI	CCNNNNNNNGG	2 cut(s)	919, 1093
AflII	CTTAAG	1 cut(s)	935
AgsI	TTSAA	9 cut(s)	236, 349, 370, 419, 733, 820, 862, 1075, 1117
AhdI	GACNNNNNGTC	1 cut(s)	829
AjiI	CACGTC	1 cut(s)	55
AjnI	CCWGG	4 cut(s)	744, 912, 1024, 1086
AluBI	AGCT	9 cut(s)	156, 248, 311, 519, 625, 670, 754, 965, 1045
AluI	AGCT	9 cut(s)	156, 248, 311, 519, 625, 670, 754, 965, 1045
Alw21I	GWGCWC	2 cut(s)	60, 756
Alw26I	GTCTC	1 cut(s)	253
Alw44I	GTGCAC	1 cut(s)	56
AlwI	GGATC	1 cut(s)	339
AoxI	GGCC	1 cut(s)	115
ApaLI	GTGCAC	1 cut(s)	56
ApeKI	GCWGC	3 cut(s)	308, 434, 962
ApoI	RAATTY	3 cut(s)	336, 758, 1058
Asp700I	GAANNNNTTC	1 cut(s)	1020
AspLEI	GCGC	4 cut(s)	49, 163, 186, 592
AspS9I	GGNCC	3 cut(s)	444, 738, 981
AsuHPI	GGTGA	1 cut(s)	468
AvaII	GGWCC	3 cut(s)	444, 738, 981
BaeGI	GKGCMC	1 cut(s)	60
BanII	GRGCYC	1 cut(s)	756
Bbv12I	GWGCWC	2 cut(s)	60, 756
BbvI	GCAGC	3 cut(s)	320, 446, 974
BccI	CCATC	4 cut(s)	557, 658, 749, 934
BceAI	ACGGC	1 cut(s)	160
BciT130I	CCWGG	4 cut(s)	746, 914, 1026, 1088
BcoDI	GTCTC	1 cut(s)	253
BfaI	CTAG	4 cut(s)	342, 411, 638, 671
BfrI	CTTAAG	1 cut(s)	935
BglII	AGATCT	1 cut(s)	87
BisI	GCNGC	6 cut(s)	115, 211, 309, 432, 435, 963
BlsI	GCNGC	6 cut(s)	116, 212, 310, 433, 436, 964
BmcAI	AGTACT	1 cut(s)	469
Bme1390I	CCNGG	4 cut(s)	746, 914, 1026, 1088
Bme18I	GGWCC	3 cut(s)	444, 738, 981
BmeRI	GACNNNNNGTC	1 cut(s)	829
BmgBI	CACGTC	1 cut(s)	55
BmgT120I	GGNCC	3 cut(s)	444, 738, 981
BmiI	GGNNCC	3 cut(s)	214, 445, 739
BmrFI	CCNGG	4 cut(s)	746, 914, 1026, 1088
BmsI	GCATC	4 cut(s)	404, 601, 997, 1019
BpmI	CTGGAG	1 cut(s)	935
BpuEI	CTTGAG	2 cut(s)	665, 977
BsaHI	GRCGYC	1 cut(s)	204
BsaJI	CCNNGG	3 cut(s)	118, 912, 1025
BsaWI	WCCGGW	1 cut(s)	215
Bsc4I	CCNNNNNNNGG	2 cut(s)	919, 1093
Bse1I	ACTGG	1 cut(s)	688
Bse3DI	GCAATG	1 cut(s)	586
BseBI	CCWGG	4 cut(s)	746, 914, 1026, 1088
BseDI	CCNNGG	3 cut(s)	118, 912, 1025
BseGI	GGATG	4 cut(s)	568, 669, 741, 880
BseLI	CCNNNNNNNGG	2 cut(s)	919, 1093
BseMI	GCAATG	1 cut(s)	586
BseMII	CTCAG	4 cut(s)	240, 264, 485, 825
BseNI	ACTGG	1 cut(s)	688
BseRI	GAGGAG	3 cut(s)	92, 123, 734
BseSI	GKGCMC	1 cut(s)	60
BseXI	GCAGC	3 cut(s)	320, 446, 974
Bsh1236I	CGCG	3 cut(s)	47, 161, 184
BshFI	GGCC	1 cut(s)	117
BsiHKAI	GWGCWC	2 cut(s)	60, 756
BsiSI	CCGG	1 cut(s)	216
BslFI	GGGAC	4 cut(s)	22, 457, 751, 1109
BslI	CCNNNNNNNGG	2 cut(s)	919, 1093
BsmAI	GTCTC	1 cut(s)	253
BsmFI	GGGAC	4 cut(s)	22, 457, 751, 1109
BsmI	GAATGC	1 cut(s)	163
BsnI	GGCC	1 cut(s)	117
Bsp1286I	GDGCHC	2 cut(s)	60, 756
Bsp1407I	TGTACA	1 cut(s)	700
Bsp143I	GATC	6 cut(s)	42, 87, 136, 331, 494, 903
BspACI	CCGC	5 cut(s)	114, 210, 431, 661, 868
BspANI	GGCC	1 cut(s)	117
BspCNI	CTCAG	4 cut(s)	241, 265, 484, 826
BspFNI	CGCG	3 cut(s)	47, 161, 184
BspLI	GGNNCC	3 cut(s)	214, 445, 739
BspPI	GGATC	1 cut(s)	339
BspQI	GCTCTTC	1 cut(s)	744
BspTI	CTTAAG	1 cut(s)	935
BsrDI	GCAATG	1 cut(s)	586
BsrGI	TGTACA	1 cut(s)	700
BsrI	ACTGG	1 cut(s)	688
BssECI	CCNNGG	3 cut(s)	118, 912, 1025
BssMI	GATC	6 cut(s)	42, 87, 136, 331, 494, 903
BssNI	GRCGYC	1 cut(s)	204
BssT1I	CCWWGG	1 cut(s)	118
Bst2UI	CCWGG	4 cut(s)	746, 914, 1026, 1088
Bst6I	CTCTTC	2 cut(s)	69, 744
BstACI	GRCGYC	1 cut(s)	204
BstAFI	CTTAAG	1 cut(s)	935
BstAPI	GCANNNNNTGC	1 cut(s)	55
BstAUI	TGTACA	1 cut(s)	700
BstC8I	GCNNGC	3 cut(s)	188, 627, 1084
BstDEI	CTNAG	5 cut(s)	249, 273, 471, 834, 1003
BstENI	CCTNNNNNAGG	1 cut(s)	917
BstF5I	GGATG	4 cut(s)	568, 669, 741, 880
BstFNI	CGCG	3 cut(s)	47, 161, 184
BstHHI	GCGC	4 cut(s)	49, 163, 186, 592
BstKTI	GATC	6 cut(s)	45, 90, 139, 334, 497, 906
BstMAI	GTCTC	1 cut(s)	253
BstMBI	GATC	6 cut(s)	42, 87, 136, 331, 494, 903
BstMWI	GCNNNNNNNGC	5 cut(s)	55, 181, 210, 667, 1051
BstNI	CCWGG	4 cut(s)	746, 914, 1026, 1088
BstNSI	RCATGY	1 cut(s)	607
BstSCI	CCNGG	4 cut(s)	744, 912, 1024, 1086
BstSLI	GKGCMC	1 cut(s)	60
BstUI	CGCG	3 cut(s)	47, 161, 184
BstV1I	GCAGC	3 cut(s)	320, 446, 974
BstX2I	RGATCY	1 cut(s)	87
BstYI	RGATCY	1 cut(s)	87
BsuRI	GGCC	1 cut(s)	117
BtrI	CACGTC	1 cut(s)	55
BtsCI	GGATG	4 cut(s)	568, 669, 741, 880
Cac8I	GCNNGC	3 cut(s)	188, 627, 1084
CfoI	GCGC	4 cut(s)	49, 163, 186, 592
Cfr13I	GGNCC	3 cut(s)	444, 738, 981
CseI	GACGC	1 cut(s)	193
Csp6I	GTAC	2 cut(s)	468, 701
CviAII	CATG	1 cut(s)	604
CviQI	GTAC	2 cut(s)	468, 701
DdeI	CTNAG	5 cut(s)	249, 273, 471, 834, 1003
DpnI	GATC	6 cut(s)	44, 89, 138, 333, 496, 905
DpnII	GATC	6 cut(s)	42, 87, 136, 331, 494, 903
DraI	TTTAAA	1 cut(s)	895
DriI	GACNNNNNGTC	1 cut(s)	829
EaeI	YGGCCR	1 cut(s)	115
Eam1104I	CTCTTC	2 cut(s)	69, 744
Eam1105I	GACNNNNNGTC	1 cut(s)	829
EarI	CTCTTC	2 cut(s)	69, 744
Ecl136II	GAGCTC	1 cut(s)	754
Eco130I	CCWWGG	1 cut(s)	118
Eco24I	GRGCYC	1 cut(s)	756
Eco47I	GGWCC	3 cut(s)	444, 738, 981
Eco53kI	GAGCTC	1 cut(s)	754
Eco57I	CTGAAG	1 cut(s)	248
EcoICRI	GAGCTC	1 cut(s)	754
EcoNI	CCTNNNNNAGG	1 cut(s)	917
EcoO109I	RGGNCCY	1 cut(s)	981
EcoRII	CCWGG	4 cut(s)	744, 912, 1024, 1086
EcoT14I	CCWWGG	1 cut(s)	118
EcoT22I	ATGCAT	1 cut(s)	1012
EcoT38I	GRGCYC	1 cut(s)	756
ErhI	CCWWGG	1 cut(s)	118
FaeI	CATG	1 cut(s)	607
FaiI	YATR	3 cut(s)	306, 555, 605
FaqI	GGGAC	4 cut(s)	22, 457, 751, 1109
FatI	CATG	1 cut(s)	603
FauI	CCCGC	1 cut(s)	861
Fnu4HI	GCNGC	6 cut(s)	115, 211, 309, 432, 435, 963
FokI	GGATG	4 cut(s)	575, 676, 728, 887
FriOI	GRGCYC	1 cut(s)	756
Fsp4HI	GCNGC	6 cut(s)	115, 211, 309, 432, 435, 963
FspBI	CTAG	4 cut(s)	342, 411, 638, 671
FspI	TGCGCA	1 cut(s)	591
GlaI	GCGC	4 cut(s)	48, 162, 185, 591
GluI	GCNGC	6 cut(s)	115, 211, 309, 432, 435, 963
GsuI	CTGGAG	1 cut(s)	935
HaeIII	GGCC	1 cut(s)	117
HapII	CCGG	1 cut(s)	216
HgaI	GACGC	1 cut(s)	193
HhaI	GCGC	4 cut(s)	49, 163, 186, 592
Hin1I	GRCGYC	1 cut(s)	204
Hin1II	CATG	1 cut(s)	607
Hin6I	GCGC	4 cut(s)	47, 161, 184, 590
HinP1I	GCGC	4 cut(s)	47, 161, 184, 590
HinfI	GANTC	2 cut(s)	31, 269
HpaII	CCGG	1 cut(s)	216
HphI	GGTGA	1 cut(s)	468
Hpy166II	GTNNAC	1 cut(s)	58
Hpy188I	TCNGA	6 cut(s)	136, 141, 274, 601, 835, 1015
Hpy188III	TCNNGA	6 cut(s)	227, 266, 342, 380, 411, 525
Hpy8I	GTNNAC	1 cut(s)	58
Hpy99I	CGWCG	5 cut(s)	65, 74, 181, 184, 209
HpyAV	CCTTC	3 cut(s)	913, 1024, 1069
HpyCH4IV	ACGT	2 cut(s)	54, 830
HpyF10VI	GCNNNNNNNGC	5 cut(s)	55, 181, 210, 667, 1051
HpyF3I	CTNAG	5 cut(s)	249, 273, 471, 834, 1003
HpySE526I	ACGT	2 cut(s)	54, 830
Hsp92I	GRCGYC	1 cut(s)	204
Hsp92II	CATG	1 cut(s)	607
HspAI	GCGC	4 cut(s)	47, 161, 184, 590
Kzo9I	GATC	6 cut(s)	42, 87, 136, 331, 494, 903
LguI	GCTCTTC	1 cut(s)	744
LmnI	GCTCC	5 cut(s)	218, 622, 667, 721, 1042
Lsp1109I	GCAGC	3 cut(s)	320, 446, 974
LweI	GCATC	4 cut(s)	404, 601, 997, 1019
MaeI	CTAG	4 cut(s)	342, 411, 638, 671
MaeII	ACGT	2 cut(s)	54, 830
MaeIII	GTNAC	2 cut(s)	474, 711
MalI	GATC	6 cut(s)	44, 89, 138, 333, 496, 905
MboI	GATC	6 cut(s)	42, 87, 136, 331, 494, 903
MboII	GAAGA	4 cut(s)	86, 761, 958, 1046
MfeI	CAATTG	1 cut(s)	656
MflI	RGATCY	1 cut(s)	87
MhlI	GDGCHC	2 cut(s)	60, 756
MmeI	TCCRAC	2 cut(s)	672, 750
Mph1103I	ATGCAT	1 cut(s)	1012
MroXI	GAANNNNTTC	1 cut(s)	1020
MseI	TTAA	6 cut(s)	255, 285, 317, 765, 894, 936
MslI	CAYNNNNRTG	1 cut(s)	794
MspCI	CTTAAG	1 cut(s)	935
MspI	CCGG	1 cut(s)	216
MspR9I	CCNGG	4 cut(s)	746, 914, 1026, 1088
MunI	CAATTG	1 cut(s)	656
Mva1269I	GAATGC	1 cut(s)	163
MvaI	CCWGG	4 cut(s)	746, 914, 1026, 1088
MvnI	CGCG	3 cut(s)	47, 161, 184
MwoI	GCNNNNNNNGC	5 cut(s)	55, 181, 210, 667, 1051
NdeII	GATC	6 cut(s)	42, 87, 136, 331, 494, 903
NlaIII	CATG	1 cut(s)	607
NlaIV	GGNNCC	3 cut(s)	214, 445, 739
NmuCI	GTSAC	1 cut(s)	474
NsbI	TGCGCA	1 cut(s)	591
NsiI	ATGCAT	1 cut(s)	1012
NspI	RCATGY	1 cut(s)	607
PciSI	GCTCTTC	1 cut(s)	744
PcsI	WCGNNNNNNNCGW	5 cut(s)	51, 60, 66, 69, 194
PctI	GAATGC	1 cut(s)	163
PdmI	GAANNNNTTC	1 cut(s)	1020
PfeI	GAWTC	2 cut(s)	31, 269
PfoI	TCCNGGA	1 cut(s)	744
PkrI	GCNGC	6 cut(s)	116, 212, 310, 433, 436, 964
PpuMI	RGGWCCY	1 cut(s)	981
Psp124BI	GAGCTC	1 cut(s)	756
Psp5II	RGGWCCY	1 cut(s)	981
Psp6I	CCWGG	4 cut(s)	744, 912, 1024, 1086
PspGI	CCWGG	4 cut(s)	744, 912, 1024, 1086
PspN4I	GGNNCC	3 cut(s)	214, 445, 739
PspPI	GGNCC	3 cut(s)	444, 738, 981
PspPPI	RGGWCCY	1 cut(s)	981
PsuI	RGATCY	1 cut(s)	87
RsaI	GTAC	2 cut(s)	469, 702
RsaNI	GTAC	2 cut(s)	468, 701
RseI	CAYNNNNRTG	1 cut(s)	794
SacI	GAGCTC	1 cut(s)	756
SapI	GCTCTTC	1 cut(s)	744
SaqAI	TTAA	6 cut(s)	255, 285, 317, 765, 894, 936
SatI	GCNGC	6 cut(s)	115, 211, 309, 432, 435, 963
Sau3AI	GATC	6 cut(s)	42, 87, 136, 331, 494, 903
Sau96I	GGNCC	3 cut(s)	444, 738, 981
ScaI	AGTACT	1 cut(s)	469
ScrFI	CCNGG	4 cut(s)	746, 914, 1026, 1088
SduI	GDGCHC	2 cut(s)	60, 756
SfaNI	GCATC	4 cut(s)	404, 601, 997, 1019
SinI	GGWCC	3 cut(s)	444, 738, 981
SmiMI	CAYNNNNRTG	1 cut(s)	794
SmlI	CTYRAG	3 cut(s)	644, 935, 956
SmoI	CTYRAG	3 cut(s)	644, 935, 956
SsiI	CCGC	5 cut(s)	114, 210, 431, 661, 868
SspMI	CTAG	4 cut(s)	342, 411, 638, 671
SstI	GAGCTC	1 cut(s)	756
StyD4I	CCNGG	4 cut(s)	744, 912, 1024, 1086
StyI	CCWWGG	1 cut(s)	118
TaiI	ACGT	2 cut(s)	57, 833
TaqI	TCGA	3 cut(s)	197, 497, 844
TatI	WGTACW	2 cut(s)	467, 700
TauI	GCSGC	3 cut(s)	117, 213, 434
TfiI	GAWTC	2 cut(s)	31, 269
Tru1I	TTAA	6 cut(s)	255, 285, 317, 765, 894, 936
Tru9I	TTAA	6 cut(s)	255, 285, 317, 765, 894, 936
TseFI	GTSAC	1 cut(s)	474
TseI	GCWGC	3 cut(s)	308, 434, 962
Tsp45I	GTSAC	1 cut(s)	474
TspDTI	ATGAA	4 cut(s)	630, 665, 828, 966
Vha464I	CTTAAG	1 cut(s)	935
VneI	GTGCAC	1 cut(s)	56
VpaK11BI	GGWCC	3 cut(s)	444, 738, 981
XagI	CCTNNNNNAGG	1 cut(s)	917
XapI	RAATTY	3 cut(s)	336, 758, 1058
XbaI	TCTAGA	2 cut(s)	341, 410
XceI	RCATGY	1 cut(s)	607
XcmI	CCANNNNNNNNNTGG	1 cut(s)	539
XmnI	GAANNNNTTC	1 cut(s)	1020
XspI	CTAG	4 cut(s)	342, 411, 638, 671
ZrmI	AGTACT	1 cut(s)	469
Zsp2I	ATGCAT	1 cut(s)	1012

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.