Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007456.1

Orthogroup ID

OG0004087

Physical Location & Seq

Genomic Coordinates Reverse (-)

38301 .. 39777

Gene Structure 1477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007456.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

atgtgggggatgattgccaacctcaaagagaatctcaacaagatcgcgcaggacgtgcacgacgacagcgacgaagaggagtttgagatctacgcctcaaccaatggaggaggcggccaaggttcgtccatttctgatgggagaaactcccacagcttcgcgcattccaagtcaccgtcgtcgcgctcgccggtgtcgaatggcgtcggcggctccggtgttagtccagagattgaacaataccgagctgagattaagagatctgaggcaaaaatgctaggctctctggacgaacgggcctctcgtctcaaggacatggagcttgaaaagaaacacctcgagtcccatatcaaaaaccttcaggttcaattagccacattaaccgctgagattgctcaagaggaagtccaacaggaacaatccttggccgctttcgaggtggtgacccaagatctagcccaagcccacagattagttcaacaggctgaacatgctgcttgtcgggctagctatcgcttggatgatcatctcctccgcctgacctacgcggccaggggactttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0006996 GO:0007030 GO:0008150 GO:0009987 GO:0010256 GO:0012505 GO:0016043 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071840 GO:0097708

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

187

Amino Acids

20.59

Weight (kDa)

5.36

Isoelectric Point (pI)

61.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46180 AT3G61570 AT3G61570
fragaria_vesca	FvH4_7g15532 FvH4_7g15532 FvH4_7g15532 FvH4_7g15532 FvH4_7g15532
malus_domestica	MD01G1072600.v1.1 MD07G1130300.v1.1
prunus_persica	Prupe.2G178900_v2.0.a1 Prupe.2G178900_v2.0.a1 Prupe.2G178900_v2.0.a1
pyrus_communis	pycom01g10180 pycom07g12720
rosa_chinensis	RchiOBHm_Chr1g0357861
rosa_laevigata	RLG00000027990
rosa_multiflora	Rmu_sc0007456.1_g000001 Rmu_sc0007456.1_g000005
rosa_roxburghii	Rroxscaffold_4G00298400 Rroxscaffold_4G00298440 Rroxscaffold_7G00215440
rosa_rugosa	Rorug01G0259100 Rorug01G0259200
rosa_samantha	Rh1AG273100 Rh1BG240400 Rh1CG256900 Rh1DG268700 Rh3AG149000 Rh3BG172200 Rh4AG248000 Rh5AG428400
rosa_wichuraiana	Rw1G024390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	4 cut(s)	47, 161, 184, 548
AciI	CCGC	6 cut(s)	114, 210, 384, 429, 535, 548
AcoI	YGGCCR	3 cut(s)	115, 426, 549
AcuI	CTGAAG	1 cut(s)	344
AcyI	GRCGYC	1 cut(s)	204
AgsI	TTSAA	4 cut(s)	236, 326, 368, 479
AjiI	CACGTC	1 cut(s)	55
AjnI	CCWGG	1 cut(s)	551
AluBI	AGCT	4 cut(s)	156, 248, 322, 510
AluI	AGCT	4 cut(s)	156, 248, 322, 510
Alw21I	GWGCWC	1 cut(s)	60
Alw26I	GTCTC	1 cut(s)	311
Alw44I	GTGCAC	1 cut(s)	56
Ama87I	CYCGRG	1 cut(s)	338
AoxI	GGCC	4 cut(s)	115, 297, 426, 549
ApaLI	GTGCAC	1 cut(s)	56
ApeKI	GCWGC	1 cut(s)	494
AspLEI	GCGC	3 cut(s)	49, 163, 186
AspS9I	GGNCC	1 cut(s)	297
AsuHPI	GGTGA	2 cut(s)	165, 454
AsuNHI	GCTAGC	1 cut(s)	506
AvaI	CYCGRG	1 cut(s)	338
BaeGI	GKGCMC	1 cut(s)	60
Bbv12I	GWGCWC	1 cut(s)	60
BbvI	GCAGC	1 cut(s)	481
BccI	CCATC	1 cut(s)	131
BciT130I	CCWGG	1 cut(s)	553
BclI	TGATCA	1 cut(s)	523
BcoDI	GTCTC	1 cut(s)	311
BfaI	CTAG	3 cut(s)	278, 455, 507
BglII	AGATCT	3 cut(s)	87, 260, 451
BisI	GCNGC	5 cut(s)	115, 211, 429, 495, 549
BlsI	GCNGC	5 cut(s)	116, 212, 430, 496, 550
Bme1390I	CCNGG	1 cut(s)	553
BmeT110I	CYCGRG	1 cut(s)	338
BmgBI	CACGTC	1 cut(s)	55
BmgT120I	GGNCC	1 cut(s)	297
BmiI	GGNNCC	1 cut(s)	214
BmrFI	CCNGG	1 cut(s)	553
BmtI	GCTAGC	1 cut(s)	510
BpuEI	CTTGAG	2 cut(s)	293, 381
BsaBI	GATNNNNATC	1 cut(s)	525
BsaHI	GRCGYC	1 cut(s)	204
BsaJI	CCNNGG	3 cut(s)	118, 423, 552
BsaWI	WCCGGW	1 cut(s)	215
Bse118I	RCCGGY	1 cut(s)	190
Bse8I	GATNNNNATC	1 cut(s)	525
BseBI	CCWGG	1 cut(s)	553
BseDI	CCNNGG	3 cut(s)	118, 423, 552
BseGI	GGATG	2 cut(s)	15, 526
BseJI	GATNNNNATC	1 cut(s)	525
BseMII	CTCAG	3 cut(s)	240, 255, 378
BseRI	GAGGAG	3 cut(s)	92, 123, 521
BseSI	GKGCMC	1 cut(s)	60
BseXI	GCAGC	1 cut(s)	481
Bsh1236I	CGCG	4 cut(s)	47, 161, 184, 548
BshFI	GGCC	4 cut(s)	117, 299, 428, 551
BsiHKAI	GWGCWC	1 cut(s)	60
BsiHKCI	CYCGRG	1 cut(s)	338
BsiSI	CCGG	2 cut(s)	191, 216
BslFI	GGGAC	1 cut(s)	328
BsmAI	GTCTC	1 cut(s)	311
BsmBI	CGTCTC	1 cut(s)	311
BsmFI	GGGAC	1 cut(s)	328
BsmI	GAATGC	1 cut(s)	163
BsnI	GGCC	4 cut(s)	117, 299, 428, 551
BsoBI	CYCGRG	1 cut(s)	338
Bsp1286I	GDGCHC	1 cut(s)	60
Bsp143I	GATC	5 cut(s)	42, 87, 260, 451, 523
BspACI	CCGC	6 cut(s)	114, 210, 384, 429, 535, 548
BspANI	GGCC	4 cut(s)	117, 299, 428, 551
BspCNI	CTCAG	3 cut(s)	241, 256, 379
BspFNI	CGCG	4 cut(s)	47, 161, 184, 548
BspLI	GGNNCC	1 cut(s)	214
BspOI	GCTAGC	1 cut(s)	510
BsrFI	RCCGGY	1 cut(s)	190
BssAI	RCCGGY	1 cut(s)	190
BssECI	CCNNGG	3 cut(s)	118, 423, 552
BssMI	GATC	5 cut(s)	42, 87, 260, 451, 523
BssNI	GRCGYC	1 cut(s)	204
BssT1I	CCWWGG	2 cut(s)	118, 423
Bst2UI	CCWGG	1 cut(s)	553
Bst4CI	ACNGT	1 cut(s)	177
Bst6I	CTCTTC	1 cut(s)	69
BstACI	GRCGYC	1 cut(s)	204
BstAPI	GCANNNNNTGC	1 cut(s)	55
BstC8I	GCNNGC	2 cut(s)	188, 508
BstDEI	CTNAG	3 cut(s)	249, 264, 387
BstEII	GGTNACC	1 cut(s)	442
BstF5I	GGATG	2 cut(s)	15, 526
BstFNI	CGCG	4 cut(s)	47, 161, 184, 548
BstHHI	GCGC	3 cut(s)	49, 163, 186
BstKTI	GATC	5 cut(s)	45, 90, 263, 454, 526
BstMAI	GTCTC	1 cut(s)	311
BstMBI	GATC	5 cut(s)	42, 87, 260, 451, 523
BstMWI	GCNNNNNNNGC	5 cut(s)	55, 210, 392, 491, 503
BstNI	CCWGG	1 cut(s)	553
BstNSI	RCATGY	1 cut(s)	494
BstPI	GGTNACC	1 cut(s)	442
BstSCI	CCNGG	1 cut(s)	551
BstSLI	GKGCMC	1 cut(s)	60
BstUI	CGCG	4 cut(s)	47, 161, 184, 548
BstV1I	GCAGC	1 cut(s)	481
BstX2I	RGATCY	3 cut(s)	87, 260, 451
BstYI	RGATCY	3 cut(s)	87, 260, 451
BsuRI	GGCC	4 cut(s)	117, 299, 428, 551
BtrI	CACGTC	1 cut(s)	55
BtsCI	GGATG	2 cut(s)	15, 526
Cac8I	GCNNGC	2 cut(s)	188, 508
CfoI	GCGC	3 cut(s)	49, 163, 186
Cfr10I	RCCGGY	1 cut(s)	190
Cfr13I	GGNCC	1 cut(s)	297
CseI	GACGC	1 cut(s)	193
CviAII	CATG	2 cut(s)	316, 491
DdeI	CTNAG	3 cut(s)	249, 264, 387
DpnI	GATC	5 cut(s)	44, 89, 262, 453, 525
DpnII	GATC	5 cut(s)	42, 87, 260, 451, 523
EaeI	YGGCCR	3 cut(s)	115, 426, 549
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
EciI	GGCGGA	1 cut(s)	524
Eco130I	CCWWGG	2 cut(s)	118, 423
Eco57I	CTGAAG	1 cut(s)	344
Eco88I	CYCGRG	1 cut(s)	338
Eco91I	GGTNACC	1 cut(s)	442
EcoO65I	GGTNACC	1 cut(s)	442
EcoRII	CCWGG	1 cut(s)	551
EcoT14I	CCWWGG	2 cut(s)	118, 423
ErhI	CCWWGG	2 cut(s)	118, 423
Esp3I	CGTCTC	1 cut(s)	311
FaeI	CATG	2 cut(s)	319, 494
FaiI	YATR	3 cut(s)	317, 348, 492
FaqI	GGGAC	1 cut(s)	328
FatI	CATG	2 cut(s)	315, 490
FbaI	TGATCA	1 cut(s)	523
Fnu4HI	GCNGC	5 cut(s)	115, 211, 429, 495, 549
FokI	GGATG	2 cut(s)	22, 533
Fsp4HI	GCNGC	5 cut(s)	115, 211, 429, 495, 549
FspBI	CTAG	3 cut(s)	278, 455, 507
GlaI	GCGC	3 cut(s)	48, 162, 185
GluI	GCNGC	5 cut(s)	115, 211, 429, 495, 549
HaeIII	GGCC	4 cut(s)	117, 299, 428, 551
HapII	CCGG	2 cut(s)	191, 216
HgaI	GACGC	1 cut(s)	193
HhaI	GCGC	3 cut(s)	49, 163, 186
Hin1I	GRCGYC	1 cut(s)	204
Hin1II	CATG	2 cut(s)	319, 494
Hin6I	GCGC	3 cut(s)	47, 161, 184
HinP1I	GCGC	3 cut(s)	47, 161, 184
HinfI	GANTC	2 cut(s)	31, 341
HpaII	CCGG	2 cut(s)	191, 216
HphI	GGTGA	2 cut(s)	165, 454
Hpy166II	GTNNAC	1 cut(s)	58
Hpy188I	TCNGA	2 cut(s)	136, 265
Hpy188III	TCNNGA	3 cut(s)	227, 287, 398
Hpy8I	GTNNAC	1 cut(s)	58
Hpy99I	CGWCG	5 cut(s)	65, 74, 181, 184, 209
HpyAV	CCTTC	1 cut(s)	368
HpyCH4III	ACNGT	1 cut(s)	177
HpyCH4IV	ACGT	1 cut(s)	54
HpyCH4V	TGCA	1 cut(s)	58
HpyF10VI	GCNNNNNNNGC	5 cut(s)	55, 210, 392, 491, 503
HpyF3I	CTNAG	3 cut(s)	249, 264, 387
HpySE526I	ACGT	1 cut(s)	54
Hsp92I	GRCGYC	1 cut(s)	204
Hsp92II	CATG	2 cut(s)	319, 494
HspAI	GCGC	3 cut(s)	47, 161, 184
Ksp22I	TGATCA	1 cut(s)	523
Kzo9I	GATC	5 cut(s)	42, 87, 260, 451, 523
LmnI	GCTCC	2 cut(s)	218, 319
Lsp1109I	GCAGC	1 cut(s)	481
MaeI	CTAG	3 cut(s)	278, 455, 507
MaeII	ACGT	1 cut(s)	54
MaeIII	GTNAC	2 cut(s)	171, 442
MalI	GATC	5 cut(s)	44, 89, 262, 453, 525
MboI	GATC	5 cut(s)	42, 87, 260, 451, 523
MboII	GAAGA	1 cut(s)	86
MflI	RGATCY	3 cut(s)	87, 260, 451
MhlI	GDGCHC	1 cut(s)	60
MluCI	AATT	1 cut(s)	368
MlyI	GAGTC	1 cut(s)	350
MmeI	TCCRAC	1 cut(s)	433
MseI	TTAA	2 cut(s)	255, 380
MspA1I	CMGCKG	1 cut(s)	386
MspI	CCGG	2 cut(s)	191, 216
MspR9I	CCNGG	1 cut(s)	553
Mva1269I	GAATGC	1 cut(s)	163
MvaI	CCWGG	1 cut(s)	553
MvnI	CGCG	4 cut(s)	47, 161, 184, 548
MwoI	GCNNNNNNNGC	5 cut(s)	55, 210, 392, 491, 503
NdeII	GATC	5 cut(s)	42, 87, 260, 451, 523
NheI	GCTAGC	1 cut(s)	506
NlaIII	CATG	2 cut(s)	319, 494
NlaIV	GGNNCC	1 cut(s)	214
NmuCI	GTSAC	2 cut(s)	171, 442
NspI	RCATGY	1 cut(s)	494
PaeR7I	CTCGAG	1 cut(s)	338
PcsI	WCGNNNNNNNCGW	6 cut(s)	51, 60, 66, 69, 194, 301
PctI	GAATGC	1 cut(s)	163
PfeI	GAWTC	1 cut(s)	31
PkrI	GCNGC	5 cut(s)	116, 212, 430, 496, 550
PleI	GAGTC	1 cut(s)	349
PpsI	GAGTC	1 cut(s)	349
Psp6I	CCWGG	1 cut(s)	551
PspEI	GGTNACC	1 cut(s)	442
PspGI	CCWGG	1 cut(s)	551
PspN4I	GGNNCC	1 cut(s)	214
PspPI	GGNCC	1 cut(s)	297
PspXI	VCTCGAGB	1 cut(s)	338
PsuI	RGATCY	3 cut(s)	87, 260, 451
SaqAI	TTAA	2 cut(s)	255, 380
SatI	GCNGC	5 cut(s)	115, 211, 429, 495, 549
Sau3AI	GATC	5 cut(s)	42, 87, 260, 451, 523
Sau96I	GGNCC	1 cut(s)	297
SchI	GAGTC	1 cut(s)	350
ScrFI	CCNGG	1 cut(s)	553
SduI	GDGCHC	1 cut(s)	60
Sfr274I	CTCGAG	1 cut(s)	338
SgrAI	CRCCGGYG	1 cut(s)	190
SlaI	CTCGAG	1 cut(s)	338
SmlI	CTYRAG	3 cut(s)	308, 338, 396
SmoI	CTYRAG	3 cut(s)	308, 338, 396
Sse9I	AATT	1 cut(s)	368
SsiI	CCGC	6 cut(s)	114, 210, 384, 429, 535, 548
SspMI	CTAG	3 cut(s)	278, 455, 507
StyD4I	CCNGG	1 cut(s)	551
StyI	CCWWGG	2 cut(s)	118, 423
TaaI	ACNGT	1 cut(s)	177
TaiI	ACGT	1 cut(s)	57
TaqI	TCGA	3 cut(s)	197, 339, 435
TasI	AATT	1 cut(s)	368
TauI	GCSGC	4 cut(s)	117, 213, 431, 551
TfiI	GAWTC	1 cut(s)	31
Tru1I	TTAA	2 cut(s)	255, 380
Tru9I	TTAA	2 cut(s)	255, 380
TseFI	GTSAC	2 cut(s)	171, 442
TseI	GCWGC	1 cut(s)	494
Tsp45I	GTSAC	2 cut(s)	171, 442
VneI	GTGCAC	1 cut(s)	56
XceI	RCATGY	1 cut(s)	494
XhoI	CTCGAG	1 cut(s)	338
XspI	CTAG	3 cut(s)	278, 455, 507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.