Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0004087

Physical Location & Seq

Genomic Coordinates Forward (+)

14704146 .. 14707954

Gene Structure 3809 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG172200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGTGTGTCTTGACTGGCTGTGATTTCCTTCGATCTGTTCCTGGAATTGGGATTGGTAAAGCTTATGCCTTGGTTTCTAAGTATAGGGATCAAATTTCTATATTGAATAAAGAGAATGGCTCATTGAAACAAAATCTGGACACAACTATTGCATCTCTAAATGCCTCTAGAATTGAAAACTACAAAGCGGCAGCAAATGGGACCAACTTGCACAAGGGAAGTAGTAATCAGTCACCCAACCGACAACAAAGATTGACAGGTCATGCAAAAACCAGCTACTCTGGACACCAGAAACAAAATGGTGTTGTCTATACACAAAATGGGAATGGGATAAGCAATGGGATTGCGCATCTTTCAAACATGCAGGGGAATGAAAGGGAGCATCTACAATTCAGTATCATCTCTTTATCAGCATATATTGCAGGATTGGGTTCTCTGGTTTGGAGGTCTAGCGCAAAACACAAGCCCCAAAGAGTTGGAAAGGAGCATCTGCTCGAAGATGAGGATATTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0006996 GO:0007030 GO:0008150 GO:0009987 GO:0010256 GO:0012505 GO:0016043 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071840 GO:0097708

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

171

Amino Acids

18.6

Weight (kDa)

9.55

Isoelectric Point (pI)

25.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46180 AT3G61570 AT3G61570
fragaria_vesca	FvH4_7g15532 FvH4_7g15532 FvH4_7g15532 FvH4_7g15532 FvH4_7g15532
malus_domestica	MD01G1072600.v1.1 MD07G1130300.v1.1
prunus_persica	Prupe.2G178900_v2.0.a1 Prupe.2G178900_v2.0.a1 Prupe.2G178900_v2.0.a1
pyrus_communis	pycom01g10180 pycom07g12720
rosa_chinensis	RchiOBHm_Chr1g0357861
rosa_laevigata	RLG00000027990
rosa_multiflora	Rmu_sc0007456.1_g000001 Rmu_sc0007456.1_g000005
rosa_roxburghii	Rroxscaffold_4G00298400 Rroxscaffold_4G00298440 Rroxscaffold_7G00215440
rosa_rugosa	Rorug01G0259100 Rorug01G0259200
rosa_samantha	Rh1AG273100 Rh1BG240400 Rh1CG256900 Rh1DG268700 Rh3AG149000 Rh3BG172200 Rh4AG248000 Rh5AG428400
rosa_wichuraiana	Rw1G024390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	348
AciI	CCGC	1 cut(s)	188
AclWI	GGATC	1 cut(s)	96
AcsI	RAATTY	1 cut(s)	93
AfiI	CCNNNNNNNGG	1 cut(s)	47
AgsI	TTSAA	4 cut(s)	106, 127, 176, 357
AjnI	CCWGG	1 cut(s)	40
AluBI	AGCT	2 cut(s)	62, 276
AluI	AGCT	2 cut(s)	62, 276
AlwI	GGATC	1 cut(s)	96
ApeKI	GCWGC	1 cut(s)	191
ApoI	RAATTY	1 cut(s)	93
AspLEI	GCGC	2 cut(s)	349, 455
AspS9I	GGNCC	1 cut(s)	201
AsuHPI	GGTGA	1 cut(s)	225
AvaII	GGWCC	1 cut(s)	201
BbvI	GCAGC	1 cut(s)	203
BciT130I	CCWGG	1 cut(s)	42
BfaI	CTAG	2 cut(s)	168, 450
BisI	GCNGC	2 cut(s)	189, 192
BlsI	GCNGC	2 cut(s)	190, 193
Bme1390I	CCNGG	1 cut(s)	42
Bme18I	GGWCC	1 cut(s)	201
BmgT120I	GGNCC	1 cut(s)	201
BmiI	GGNNCC	1 cut(s)	202
BmrFI	CCNGG	1 cut(s)	42
BmsI	GCATC	4 cut(s)	161, 358, 391, 496
BplI	GAGNNNNNCTC	2 cut(s)	104, 136
BsaJI	CCNNGG	1 cut(s)	69
Bsc4I	CCNNNNNNNGG	1 cut(s)	47
Bse1I	ACTGG	1 cut(s)	19
Bse3DI	GCAATG	1 cut(s)	343
BseBI	CCWGG	1 cut(s)	42
BseDI	CCNNGG	1 cut(s)	69
BseLI	CCNNNNNNNGG	1 cut(s)	47
BseMI	GCAATG	1 cut(s)	343
BseNI	ACTGG	1 cut(s)	19
BseXI	GCAGC	1 cut(s)	203
BslFI	GGGAC	1 cut(s)	214
BslI	CCNNNNNNNGG	1 cut(s)	47
BsmFI	GGGAC	1 cut(s)	214
Bsp143I	GATC	2 cut(s)	32, 88
BspACI	CCGC	1 cut(s)	188
BspLI	GGNNCC	1 cut(s)	202
BspPI	GGATC	1 cut(s)	96
BsrDI	GCAATG	1 cut(s)	343
BsrI	ACTGG	1 cut(s)	19
BssECI	CCNNGG	1 cut(s)	69
BssMI	GATC	2 cut(s)	32, 88
BssT1I	CCWWGG	1 cut(s)	69
Bst2UI	CCWGG	1 cut(s)	42
BstAPI	GCANNNNNTGC	1 cut(s)	419
BstDEI	CTNAG	1 cut(s)	78
BstHHI	GCGC	2 cut(s)	349, 455
BstKTI	GATC	2 cut(s)	35, 91
BstMBI	GATC	2 cut(s)	32, 88
BstMWI	GCNNNNNNNGC	1 cut(s)	419
BstNI	CCWGG	1 cut(s)	42
BstNSI	RCATGY	1 cut(s)	364
BstSCI	CCNGG	1 cut(s)	40
BstV1I	GCAGC	1 cut(s)	203
BstXI	CCANNNNNNTGG	1 cut(s)	476
CfoI	GCGC	2 cut(s)	349, 455
Cfr13I	GGNCC	1 cut(s)	201
CviAII	CATG	2 cut(s)	263, 361
CviJI	RGCY	5 cut(s)	18, 62, 120, 276, 466
CviKI_1	RGCY	5 cut(s)	18, 62, 120, 276, 466
DdeI	CTNAG	1 cut(s)	78
DpnI	GATC	2 cut(s)	34, 90
DpnII	GATC	2 cut(s)	32, 88
Eco130I	CCWWGG	1 cut(s)	69
Eco47I	GGWCC	1 cut(s)	201
EcoRII	CCWGG	1 cut(s)	40
EcoT14I	CCWWGG	1 cut(s)	69
ErhI	CCWWGG	1 cut(s)	69
FaeI	CATG	2 cut(s)	266, 364
FaiI	YATR	8 cut(s)	66, 84, 101, 264, 312, 362, 415, 417
FaqI	GGGAC	1 cut(s)	214
FatI	CATG	2 cut(s)	262, 360
Fnu4HI	GCNGC	2 cut(s)	189, 192
Fsp4HI	GCNGC	2 cut(s)	189, 192
FspBI	CTAG	2 cut(s)	168, 450
FspI	TGCGCA	1 cut(s)	348
GlaI	GCGC	2 cut(s)	348, 454
GluI	GCNGC	2 cut(s)	189, 192
HhaI	GCGC	2 cut(s)	349, 455
Hin1II	CATG	2 cut(s)	266, 364
Hin6I	GCGC	2 cut(s)	347, 453
HinP1I	GCGC	2 cut(s)	347, 453
HindIII	AAGCTT	1 cut(s)	60
HphI	GGTGA	1 cut(s)	225
Hpy188III	TCNNGA	4 cut(s)	10, 137, 168, 282
HpyAV	CCTTC	1 cut(s)	38
HpyCH4V	TGCA	5 cut(s)	152, 211, 266, 364, 422
HpyF10VI	GCNNNNNNNGC	1 cut(s)	419
HpyF3I	CTNAG	1 cut(s)	78
Hsp92II	CATG	2 cut(s)	266, 364
HspAI	GCGC	2 cut(s)	347, 453
Kzo9I	GATC	2 cut(s)	32, 88
LmnI	GCTCC	2 cut(s)	379, 484
Lsp1109I	GCAGC	1 cut(s)	203
LweI	GCATC	4 cut(s)	161, 358, 391, 496
MaeI	CTAG	2 cut(s)	168, 450
MaeIII	GTNAC	1 cut(s)	231
MalI	GATC	2 cut(s)	34, 90
MboI	GATC	2 cut(s)	32, 88
MboII	GAAGA	1 cut(s)	509
MluCI	AATT	4 cut(s)	45, 93, 171, 389
MmeI	TCCRAC	1 cut(s)	457
MnlI	CCTC	3 cut(s)	175, 438, 496
MspR9I	CCNGG	1 cut(s)	42
MvaI	CCWGG	1 cut(s)	42
MwoI	GCNNNNNNNGC	1 cut(s)	419
NdeII	GATC	2 cut(s)	32, 88
NlaIII	CATG	2 cut(s)	266, 364
NlaIV	GGNNCC	1 cut(s)	202
NmuCI	GTSAC	1 cut(s)	231
NsbI	TGCGCA	1 cut(s)	348
NspI	RCATGY	1 cut(s)	364
PfoI	TCCNGGA	1 cut(s)	40
PkrI	GCNGC	2 cut(s)	190, 193
Psp6I	CCWGG	1 cut(s)	40
PspGI	CCWGG	1 cut(s)	40
PspN4I	GGNNCC	1 cut(s)	202
PspPI	GGNCC	1 cut(s)	201
SatI	GCNGC	2 cut(s)	189, 192
Sau3AI	GATC	2 cut(s)	32, 88
Sau96I	GGNCC	1 cut(s)	201
ScrFI	CCNGG	1 cut(s)	42
SetI	ASST	4 cut(s)	64, 262, 278, 449
SfaNI	GCATC	4 cut(s)	161, 358, 391, 496
SinI	GGWCC	1 cut(s)	201
Sse9I	AATT	4 cut(s)	45, 93, 171, 389
SsiI	CCGC	1 cut(s)	188
SspMI	CTAG	2 cut(s)	168, 450
StyD4I	CCNGG	1 cut(s)	40
StyI	CCWWGG	1 cut(s)	69
TaqI	TCGA	2 cut(s)	31, 495
TasI	AATT	4 cut(s)	45, 93, 171, 389
TauI	GCSGC	1 cut(s)	191
TseFI	GTSAC	1 cut(s)	231
TseI	GCWGC	1 cut(s)	191
Tsp45I	GTSAC	1 cut(s)	231
TspDTI	ATGAA	1 cut(s)	387
VpaK11BI	GGWCC	1 cut(s)	201
XapI	RAATTY	1 cut(s)	93
XbaI	TCTAGA	1 cut(s)	167
XceI	RCATGY	1 cut(s)	364
XcmI	CCANNNNNNNNNTGG	1 cut(s)	296
XspI	CTAG	2 cut(s)	168, 450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.