mediator of RNA polymerase II transcription subunit
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G00450 AT4G00450 AT4G00450 |
| fragaria_vesca | FvH4_7g14270 FvH4_7g14270 FvH4_7g14270 |
| malus_domestica | MD01G1060600.v1.1 MD07G1137100.v1.1 |
| prunus_persica | Prupe.2G170500_v2.0.a1 Prupe.2G170500_v2.0.a1 Prupe.2G170500_v2.0.a1 Prupe.2G170500_v2.0.a1 Prupe.2G170500_v2.0.a1 Prupe.2G170500_v2.0.a1 Prupe.2G170500_v2.0.a1 Prupe.2G170500_v2.0.a1 Prupe.2G170500_v2.0.a1 Prupe.2G170500_v2.0.a1 Prupe.2G170500_v2.0.a1 Prupe.2G170500_v2.0.a1 |
| pyrus_communis | pycom01g09080 pycom07g13490 |
| rosa_chinensis | RchiOBHm_Chr1g0355261 |
| rosa_laevigata | RLG00000028166 |
| rosa_multiflora | Rmu_sc0003115.1_g000044 |
| rosa_roxburghii | Rroxscaffold_4G00300550 |
| rosa_rugosa | Rorug01G0245800 Rorug01G0245900 Rorug01G0246000 Rorug01G0246100 Rorug01G0246200 Rorug01G0246200 Rorug01G0246200 |
| rosa_samantha | Rh1AG258300 Rh1BG227900 Rh1CG242000 Rh1DG255700 |
| rosa_wichuraiana | Rw1G022800 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 3904 |
| Acc16I | TGCGCA | 1 cut(s) | 323 |
| Acc36I | ACCTGC | 1 cut(s) | 3904 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2421 |
| AccI | GTMKAC | 2 cut(s) | 1413, 3868 |
| AccII | CGCG | 1 cut(s) | 3391 |
| AciI | CCGC | 7 cut(s) | 157, 1420, 2419, 2897, 2941, 3599, 3928 |
| AcoI | YGGCCR | 2 cut(s) | 2371, 3929 |
| AcsI | RAATTY | 3 cut(s) | 980, 1156, 1946 |
| AcuI | CTGAAG | 3 cut(s) | 1518, 1619, 2691 |
| AcyI | GRCGYC | 1 cut(s) | 3024 |
| AdeI | CACNNNGTG | 1 cut(s) | 971 |
| AfaI | GTAC | 4 cut(s) | 132, 407, 729, 1689 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 368, 402, 812, 1622, 2421, 3364 |
| AflII | CTTAAG | 1 cut(s) | 3362 |
| AflIII | ACRYGT | 2 cut(s) | 935, 3389 |
| AgeI | ACCGGT | 1 cut(s) | 1399 |
| Alw21I | GWGCWC | 2 cut(s) | 2414, 3076 |
| Alw26I | GTCTC | 5 cut(s) | 1987, 2056, 2339, 2836, 3805 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 628, 3575, 3803 |
| Ama87I | CYCGRG | 2 cut(s) | 12, 3960 |
| ApoI | RAATTY | 3 cut(s) | 980, 1156, 1946 |
| AsiGI | ACCGGT | 1 cut(s) | 1399 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1948, 2734 |
| AspLEI | GCGC | 4 cut(s) | 324, 1299, 1545, 3384 |
| AspS9I | GGNCC | 7 cut(s) | 733, 1229, 1397, 1502, 2531, 3083, 3460 |
| AsuC2I | CCSGG | 3 cut(s) | 1695, 3961, 3962 |
| AsuHPI | GGTGA | 7 cut(s) | 128, 1671, 2444, 3646, 3749, 3842, 4019 |
| AvaI | CYCGRG | 2 cut(s) | 12, 3960 |
| AvaII | GGWCC | 2 cut(s) | 1229, 1397 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 453, 486 |
| BalI | TGGCCA | 1 cut(s) | 2373 |
| BamHI | GGATCC | 1 cut(s) | 3187 |
| BanII | GRGCYC | 2 cut(s) | 1226, 2414 |
| BbsI | GAAGAC | 2 cut(s) | 408, 3195 |
| Bbv12I | GWGCWC | 2 cut(s) | 2414, 3076 |
| BceAI | ACGGC | 2 cut(s) | 1530, 2696 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 589, 623 |
| BciVI | GTATCC | 1 cut(s) | 3347 |
| BclI | TGATCA | 2 cut(s) | 1186, 2316 |
| BcnI | CCSGG | 3 cut(s) | 1695, 3961, 3962 |
| BcoDI | GTCTC | 5 cut(s) | 1987, 2056, 2339, 2836, 3805 |
| BfmI | CTRYAG | 8 cut(s) | 230, 501, 2214, 2661, 3243, 3790, 4002, 4081 |
| BfoI | RGCGCY | 3 cut(s) | 1300, 1546, 3385 |
| BfrI | CTTAAG | 1 cut(s) | 3362 |
| BfuAI | ACCTGC | 1 cut(s) | 3904 |
| BfuI | GTATCC | 1 cut(s) | 3347 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2717 |
| BglII | AGATCT | 3 cut(s) | 379, 2665, 2923 |
| Bme18I | GGWCC | 2 cut(s) | 1229, 1397 |
| BmeT110I | CYCGRG | 2 cut(s) | 12, 3960 |
| BmgT120I | GGNCC | 7 cut(s) | 733, 1229, 1397, 1502, 2531, 3083, 3460 |
| BmiI | GGNNCC | 6 cut(s) | 123, 2010, 2060, 3189, 3255, 3462 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1999 |
| BpiI | GAAGAC | 2 cut(s) | 408, 3195 |
| BplI | GAGNNNNNCTC | 1 cut(s) | 27 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2752 |
| BpuEI | CTTGAG | 3 cut(s) | 351, 2879, 3162 |
| BpuMI | CCSGG | 3 cut(s) | 1695, 3961, 3962 |
| Bsa29I | ATCGAT | 3 cut(s) | 746, 1260, 4069 |
| BsaBI | GATNNNNATC | 1 cut(s) | 3111 |
| BsaHI | GRCGYC | 1 cut(s) | 3024 |
| BsaI | GGTCTC | 2 cut(s) | 1987, 2056 |
| BsaWI | WCCGGW | 2 cut(s) | 1326, 1399 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 368, 402, 812, 1622, 2421, 3364 |
| Bse118I | RCCGGY | 3 cut(s) | 1399, 1416, 2061 |
| Bse1I | ACTGG | 3 cut(s) | 32, 991, 3169 |
| Bse3DI | GCAATG | 6 cut(s) | 173, 351, 2358, 2794, 3210, 3715 |
| Bse8I | GATNNNNATC | 1 cut(s) | 3111 |
| BseCI | ATCGAT | 3 cut(s) | 746, 1260, 4069 |
| BseJI | GATNNNNATC | 1 cut(s) | 3111 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 368, 402, 812, 1622, 2421, 3364 |
| BseMI | GCAATG | 6 cut(s) | 173, 351, 2358, 2794, 3210, 3715 |
| BseMII | CTCAG | 2 cut(s) | 1019, 1530 |
| BseNI | ACTGG | 3 cut(s) | 32, 991, 3169 |
| BseRI | GAGGAG | 2 cut(s) | 134, 3472 |
| BseYI | CCCAGC | 3 cut(s) | 1119, 3437, 3722 |
| BsgI | GTGCAG | 3 cut(s) | 782, 2436, 3567 |
| Bsh1236I | CGCG | 1 cut(s) | 3391 |
| Bsh1285I | CGRYCG | 1 cut(s) | 4069 |
| BshTI | ACCGGT | 1 cut(s) | 1399 |
| BshVI | ATCGAT | 3 cut(s) | 746, 1260, 4069 |
| BsiEI | CGRYCG | 1 cut(s) | 4069 |
| BsiHKAI | GWGCWC | 2 cut(s) | 2414, 3076 |
| BsiHKCI | CYCGRG | 2 cut(s) | 12, 3960 |
| BsiSI | CCGG | 6 cut(s) | 1327, 1400, 1417, 1695, 2062, 3961 |
| BslFI | GGGAC | 2 cut(s) | 610, 3116 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 368, 402, 812, 1622, 2421, 3364 |
| BsmAI | GTCTC | 5 cut(s) | 1987, 2056, 2339, 2836, 3805 |
| BsmFI | GGGAC | 2 cut(s) | 610, 3116 |
| BsmI | GAATGC | 1 cut(s) | 1892 |
| Bso31I | GGTCTC | 2 cut(s) | 1987, 2056 |
| BsoBI | CYCGRG | 2 cut(s) | 12, 3960 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1226, 2414, 3076 |
| Bsp1407I | TGTACA | 1 cut(s) | 727 |
| Bsp19I | CCATGG | 1 cut(s) | 751 |
| BspACI | CCGC | 7 cut(s) | 157, 1420, 2419, 2897, 2941, 3599, 3928 |
| BspCNI | CTCAG | 2 cut(s) | 1018, 1531 |
| BspDI | ATCGAT | 3 cut(s) | 746, 1260, 4069 |
| BspFNI | CGCG | 1 cut(s) | 3391 |
| BspHI | TCATGA | 1 cut(s) | 1521 |
| BspLI | GGNNCC | 6 cut(s) | 123, 2010, 2060, 3189, 3255, 3462 |
| BspMAI | CTGCAG | 2 cut(s) | 3794, 4085 |
| BspMI | ACCTGC | 1 cut(s) | 3904 |
| BspQI | GCTCTTC | 1 cut(s) | 1888 |
| BspTI | CTTAAG | 1 cut(s) | 3362 |
| BspTNI | GGTCTC | 2 cut(s) | 1987, 2056 |
| BsrDI | GCAATG | 6 cut(s) | 173, 351, 2358, 2794, 3210, 3715 |
| BsrFI | RCCGGY | 3 cut(s) | 1399, 1416, 2061 |
| BsrGI | TGTACA | 1 cut(s) | 727 |
| BsrI | ACTGG | 3 cut(s) | 32, 991, 3169 |
| BssAI | RCCGGY | 3 cut(s) | 1399, 1416, 2061 |
| BssNAI | GTATAC | 1 cut(s) | 3869 |
| BssNI | GRCGYC | 1 cut(s) | 3024 |
| BssT1I | CCWWGG | 7 cut(s) | 543, 751, 1087, 1149, 1810, 1939, 2004 |
| Bst1107I | GTATAC | 1 cut(s) | 3869 |
| Bst4CI | ACNGT | 9 cut(s) | 298, 1082, 2308, 2323, 2457, 2762, 2871, 3640, 3799 |
| Bst6I | CTCTTC | 6 cut(s) | 1418, 1888, 1985, 2288, 2337, 2725 |
| BstACI | GRCGYC | 1 cut(s) | 3024 |
| BstAFI | CTTAAG | 1 cut(s) | 3362 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 581, 686, 1493 |
| BstAUI | TGTACA | 1 cut(s) | 727 |
| BstC8I | GCNNGC | 1 cut(s) | 1276 |
| BstDEI | CTNAG | 6 cut(s) | 221, 1005, 1539, 1998, 2752, 3941 |
| BstDSI | CCRYGG | 1 cut(s) | 751 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 366, 3362 |
| BstFNI | CGCG | 1 cut(s) | 3391 |
| BstH2I | RGCGCY | 3 cut(s) | 1300, 1546, 3385 |
| BstHHI | GCGC | 4 cut(s) | 324, 1299, 1545, 3384 |
| BstMAI | GTCTC | 5 cut(s) | 1987, 2056, 2339, 2836, 3805 |
| BstMCI | CGRYCG | 1 cut(s) | 4069 |
| BstNSI | RCATGY | 2 cut(s) | 939, 2835 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1999 |
| BstSFI | CTRYAG | 8 cut(s) | 230, 501, 2214, 2661, 3243, 3790, 4002, 4081 |
| BstUI | CGCG | 1 cut(s) | 3391 |
| BstV2I | GAAGAC | 2 cut(s) | 408, 3195 |
| BstX2I | RGATCY | 8 cut(s) | 379, 802, 1855, 2218, 2665, 2923, 3187, 3692 |
| BstYI | RGATCY | 8 cut(s) | 379, 802, 1855, 2218, 2665, 2923, 3187, 3692 |
| BstZ17I | GTATAC | 1 cut(s) | 3869 |
| Bsu15I | ATCGAT | 3 cut(s) | 746, 1260, 4069 |
| BsuI | GTATCC | 1 cut(s) | 3347 |
| BsuTUI | ATCGAT | 3 cut(s) | 746, 1260, 4069 |
| BtgI | CCRYGG | 1 cut(s) | 751 |
| BtsIMutI | CAGTG | 6 cut(s) | 1087, 1664, 2319, 2453, 2880, 3300 |
| BveI | ACCTGC | 1 cut(s) | 3904 |
| Cac8I | GCNNGC | 1 cut(s) | 1276 |
| CaiI | CAGNNNCTG | 3 cut(s) | 628, 3575, 3803 |
| CciI | TCATGA | 1 cut(s) | 1521 |
| CfoI | GCGC | 4 cut(s) | 324, 1299, 1545, 3384 |
| Cfr10I | RCCGGY | 3 cut(s) | 1399, 1416, 2061 |
| Cfr13I | GGNCC | 7 cut(s) | 733, 1229, 1397, 1502, 2531, 3083, 3460 |
| Cfr9I | CCCGGG | 1 cut(s) | 3960 |
| ClaI | ATCGAT | 3 cut(s) | 746, 1260, 4069 |
| CseI | GACGC | 2 cut(s) | 66, 3032 |
| CsiI | ACCWGGT | 1 cut(s) | 1976 |
| Csp6I | GTAC | 4 cut(s) | 131, 406, 728, 1688 |
| CspAI | ACCGGT | 1 cut(s) | 1399 |
| CviQI | GTAC | 4 cut(s) | 131, 406, 728, 1688 |
| DdeI | CTNAG | 6 cut(s) | 221, 1005, 1539, 1998, 2752, 3941 |
| DraI | TTTAAA | 2 cut(s) | 2271, 2982 |
| DraIII | CACNNNGTG | 1 cut(s) | 971 |
| EaeI | YGGCCR | 2 cut(s) | 2371, 3929 |
| Eam1104I | CTCTTC | 6 cut(s) | 1418, 1888, 1985, 2288, 2337, 2725 |
| EarI | CTCTTC | 6 cut(s) | 1418, 1888, 1985, 2288, 2337, 2725 |
| EciI | GGCGGA | 2 cut(s) | 1435, 2930 |
| Ecl136II | GAGCTC | 1 cut(s) | 2412 |
| Eco130I | CCWWGG | 7 cut(s) | 543, 751, 1087, 1149, 1810, 1939, 2004 |
| Eco147I | AGGCCT | 2 cut(s) | 694, 1828 |
| Eco24I | GRGCYC | 2 cut(s) | 1226, 2414 |
| Eco31I | GGTCTC | 2 cut(s) | 1987, 2056 |
| Eco32I | GATATC | 3 cut(s) | 1243, 3113, 3120 |
| Eco47I | GGWCC | 2 cut(s) | 1229, 1397 |
| Eco53kI | GAGCTC | 1 cut(s) | 2412 |
| Eco57I | CTGAAG | 3 cut(s) | 1518, 1619, 2691 |
| Eco88I | CYCGRG | 2 cut(s) | 12, 3960 |
| EcoICRI | GAGCTC | 1 cut(s) | 2412 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 366, 3362 |
| EcoO109I | RGGNCCY | 3 cut(s) | 733, 3083, 3460 |
| EcoRV | GATATC | 3 cut(s) | 1243, 3113, 3120 |
| EcoT14I | CCWWGG | 7 cut(s) | 543, 751, 1087, 1149, 1810, 1939, 2004 |
| EcoT22I | ATGCAT | 3 cut(s) | 1470, 1937, 2700 |
| EcoT38I | GRGCYC | 2 cut(s) | 1226, 2414 |
| ErhI | CCWWGG | 7 cut(s) | 543, 751, 1087, 1149, 1810, 1939, 2004 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2427, 2459 |
| FaqI | GGGAC | 2 cut(s) | 610, 3116 |
| FauNDI | CATATG | 1 cut(s) | 316 |
| FbaI | TGATCA | 2 cut(s) | 1186, 2316 |
| FblI | GTMKAC | 2 cut(s) | 1413, 3868 |
| FriOI | GRGCYC | 2 cut(s) | 1226, 2414 |
| FspI | TGCGCA | 1 cut(s) | 323 |
| GlaI | GCGC | 4 cut(s) | 323, 1298, 1544, 3383 |
| GsaI | CCCAGC | 3 cut(s) | 1123, 3441, 3726 |
| HaeII | RGCGCY | 3 cut(s) | 1300, 1546, 3385 |
| HapII | CCGG | 6 cut(s) | 1327, 1400, 1417, 1695, 2062, 3961 |
| HgaI | GACGC | 2 cut(s) | 66, 3032 |
| HhaI | GCGC | 4 cut(s) | 324, 1299, 1545, 3384 |
| Hin1I | GRCGYC | 1 cut(s) | 3024 |
| Hin6I | GCGC | 4 cut(s) | 322, 1297, 1543, 3382 |
| HinP1I | GCGC | 4 cut(s) | 322, 1297, 1543, 3382 |
| HincII | GTYRAC | 1 cut(s) | 227 |
| HindII | GTYRAC | 1 cut(s) | 227 |
| HindIII | AAGCTT | 3 cut(s) | 2265, 2426, 3420 |
| HinfI | GANTC | 8 cut(s) | 1092, 1805, 2143, 2861, 2916, 3305, 3491, 3500 |
| HpaII | CCGG | 6 cut(s) | 1327, 1400, 1417, 1695, 2062, 3961 |
| HphI | GGTGA | 7 cut(s) | 128, 1671, 2444, 3646, 3749, 3842, 4019 |
| Hpy166II | GTNNAC | 6 cut(s) | 227, 857, 1414, 2174, 3833, 3869 |
| Hpy8I | GTNNAC | 6 cut(s) | 227, 857, 1414, 2174, 3833, 3869 |
| Hpy99I | CGWCG | 1 cut(s) | 3596 |
| HpyCH4III | ACNGT | 9 cut(s) | 298, 1082, 2308, 2323, 2457, 2762, 2871, 3640, 3799 |
| HpyCH4IV | ACGT | 2 cut(s) | 464, 1686 |
| HpyF3I | CTNAG | 6 cut(s) | 221, 1005, 1539, 1998, 2752, 3941 |
| HpySE526I | ACGT | 2 cut(s) | 464, 1686 |
| Hsp92I | GRCGYC | 1 cut(s) | 3024 |
| HspAI | GCGC | 4 cut(s) | 322, 1297, 1543, 3382 |
| Ksp22I | TGATCA | 2 cut(s) | 1186, 2316 |
| LguI | GCTCTTC | 1 cut(s) | 1888 |
| LmnI | GCTCC | 9 cut(s) | 121, 1926, 2008, 2132, 2283, 2409, 2417, 3079, 3454 |
| MabI | ACCWGGT | 1 cut(s) | 1976 |
| MaeII | ACGT | 2 cut(s) | 464, 1686 |
| MaeIII | GTNAC | 5 cut(s) | 78, 1018, 2689, 3613, 3634 |
| MfeI | CAATTG | 1 cut(s) | 2256 |
| MflI | RGATCY | 8 cut(s) | 379, 802, 1855, 2218, 2665, 2923, 3187, 3692 |
| MhlI | GDGCHC | 3 cut(s) | 1226, 2414, 3076 |
| MlsI | TGGCCA | 1 cut(s) | 2373 |
| MluI | ACGCGT | 1 cut(s) | 3389 |
| MluNI | TGGCCA | 1 cut(s) | 2373 |
| MlyI | GAGTC | 4 cut(s) | 1101, 2152, 2870, 2925 |
| MmeI | TCCRAC | 5 cut(s) | 812, 2246, 3528, 3642, 3720 |
| Mox20I | TGGCCA | 1 cut(s) | 2373 |
| Mph1103I | ATGCAT | 3 cut(s) | 1470, 1937, 2700 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1948, 2734 |
| MscI | TGGCCA | 1 cut(s) | 2373 |
| MslI | CAYNNNNRTG | 4 cut(s) | 871, 1353, 2184, 3512 |
| Msp20I | TGGCCA | 1 cut(s) | 2373 |
| MspA1I | CMGCKG | 4 cut(s) | 1366, 2108, 2747, 3572 |
| MspCI | CTTAAG | 1 cut(s) | 3362 |
| MspI | CCGG | 6 cut(s) | 1327, 1400, 1417, 1695, 2062, 3961 |
| MssI | GTTTAAAC | 1 cut(s) | 2982 |
| MunI | CAATTG | 1 cut(s) | 2256 |
| Mva1269I | GAATGC | 1 cut(s) | 1892 |
| MvnI | CGCG | 1 cut(s) | 3391 |
| NciI | CCSGG | 3 cut(s) | 1695, 3961, 3962 |
| NcoI | CCATGG | 1 cut(s) | 751 |
| NdeI | CATATG | 1 cut(s) | 316 |
| NlaIV | GGNNCC | 6 cut(s) | 123, 2010, 2060, 3189, 3255, 3462 |
| NmeAIII | GCCGAG | 1 cut(s) | 205 |
| NmuCI | GTSAC | 2 cut(s) | 78, 3634 |
| NsbI | TGCGCA | 1 cut(s) | 323 |
| NsiI | ATGCAT | 3 cut(s) | 1470, 1937, 2700 |
| NspI | RCATGY | 2 cut(s) | 939, 2835 |
| PaeR7I | CTCGAG | 1 cut(s) | 12 |
| PagI | TCATGA | 1 cut(s) | 1521 |
| PaqCI | CACCTGC | 1 cut(s) | 3904 |
| PceI | AGGCCT | 2 cut(s) | 694, 1828 |
| PciI | ACATGT | 1 cut(s) | 935 |
| PciSI | GCTCTTC | 1 cut(s) | 1888 |
| PctI | GAATGC | 1 cut(s) | 1892 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1948, 2734 |
| PfeI | GAWTC | 4 cut(s) | 1805, 3305, 3491, 3500 |
| PflFI | GACNNNGTC | 1 cut(s) | 1082 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2421 |
| PfoI | TCCNGGA | 2 cut(s) | 1621, 3451 |
| PinAI | ACCGGT | 1 cut(s) | 1399 |
| Ple19I | CGATCG | 1 cut(s) | 4069 |
| PleI | GAGTC | 4 cut(s) | 1100, 2151, 2869, 2924 |
| PmeI | GTTTAAAC | 1 cut(s) | 2982 |
| PpsI | GAGTC | 4 cut(s) | 1100, 2151, 2869, 2924 |
| PscI | ACATGT | 1 cut(s) | 935 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1999 |
| Psp124BI | GAGCTC | 1 cut(s) | 2414 |
| PspFI | CCCAGC | 3 cut(s) | 1119, 3437, 3722 |
| PspN4I | GGNNCC | 6 cut(s) | 123, 2010, 2060, 3189, 3255, 3462 |
| PspPI | GGNCC | 7 cut(s) | 733, 1229, 1397, 1502, 2531, 3083, 3460 |
| PstI | CTGCAG | 2 cut(s) | 3794, 4085 |
| PstNI | CAGNNNCTG | 3 cut(s) | 628, 3575, 3803 |
| PsuI | RGATCY | 8 cut(s) | 379, 802, 1855, 2218, 2665, 2923, 3187, 3692 |
| PsyI | GACNNNGTC | 1 cut(s) | 1082 |
| PvuI | CGATCG | 1 cut(s) | 4069 |
| PvuII | CAGCTG | 4 cut(s) | 1366, 2108, 2747, 3572 |
| RsaI | GTAC | 4 cut(s) | 132, 407, 729, 1689 |
| RsaNI | GTAC | 4 cut(s) | 131, 406, 728, 1688 |
| RseI | CAYNNNNRTG | 4 cut(s) | 871, 1353, 2184, 3512 |
| SacI | GAGCTC | 1 cut(s) | 2414 |
| SapI | GCTCTTC | 1 cut(s) | 1888 |
| Sau96I | GGNCC | 7 cut(s) | 733, 1229, 1397, 1502, 2531, 3083, 3460 |
| SchI | GAGTC | 4 cut(s) | 1101, 2152, 2870, 2925 |
| SduI | GDGCHC | 3 cut(s) | 1226, 2414, 3076 |
| SexAI | ACCWGGT | 1 cut(s) | 1976 |
| SfcI | CTRYAG | 8 cut(s) | 230, 501, 2214, 2661, 3243, 3790, 4002, 4081 |
| Sfr274I | CTCGAG | 1 cut(s) | 12 |
| SinI | GGWCC | 2 cut(s) | 1229, 1397 |
| SlaI | CTCGAG | 1 cut(s) | 12 |
| SmaI | CCCGGG | 1 cut(s) | 3962 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 871, 1353, 2184, 3512 |
| SmlI | CTYRAG | 5 cut(s) | 12, 366, 2858, 3177, 3362 |
| SmoI | CTYRAG | 5 cut(s) | 12, 366, 2858, 3177, 3362 |
| SseBI | AGGCCT | 2 cut(s) | 694, 1828 |
| SsiI | CCGC | 7 cut(s) | 157, 1420, 2419, 2897, 2941, 3599, 3928 |
| SspI | AATATT | 1 cut(s) | 3909 |
| SstI | GAGCTC | 1 cut(s) | 2414 |
| StuI | AGGCCT | 2 cut(s) | 694, 1828 |
| StyI | CCWWGG | 7 cut(s) | 543, 751, 1087, 1149, 1810, 1939, 2004 |
| TaaI | ACNGT | 9 cut(s) | 298, 1082, 2308, 2323, 2457, 2762, 2871, 3640, 3799 |
| TaiI | ACGT | 2 cut(s) | 467, 1689 |
| TatI | WGTACW | 1 cut(s) | 727 |
| TauI | GCSGC | 2 cut(s) | 160, 3931 |
| TfiI | GAWTC | 4 cut(s) | 1805, 3305, 3491, 3500 |
| TscAI | CASTG | 6 cut(s) | 1087, 1664, 2326, 2460, 2880, 3307 |
| TseFI | GTSAC | 2 cut(s) | 78, 3634 |
| Tsp45I | GTSAC | 2 cut(s) | 78, 3634 |
| TspGWI | ACGGA | 1 cut(s) | 118 |
| TspMI | CCCGGG | 1 cut(s) | 3960 |
| TspRI | CASTG | 6 cut(s) | 1087, 1664, 2326, 2460, 2880, 3307 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1082 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2421 |
| Vha464I | CTTAAG | 1 cut(s) | 3362 |
| VpaK11BI | GGWCC | 2 cut(s) | 1229, 1397 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 366, 3362 |
| XapI | RAATTY | 3 cut(s) | 980, 1156, 1946 |
| XceI | RCATGY | 2 cut(s) | 939, 2835 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2951 |
| XhoI | CTCGAG | 1 cut(s) | 12 |
| XmaI | CCCGGG | 1 cut(s) | 3960 |
| XmiI | GTMKAC | 2 cut(s) | 1413, 3868 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1948, 2734 |
| Zsp2I | ATGCAT | 3 cut(s) | 1470, 1937, 2700 |