Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002990

Physical Location & Seq

Genomic Coordinates Forward (+)

35285959 .. 35290262

Gene Structure 4304 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0246000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGTCAGACTACCTTCCCGAAGAAATCATACACAAAATCCTGTTGAAGTTGCCTGTCAAAACCCTAATCAAATCCACCCTCGTCTGCAAGTCATGGAAGTCACTCATCAAATCCTCTACCTTCATTCAGTCCCATCTCCGCACCACAATCGACTCCAACGACCAAAACGACTCTCACCTCCTCCTTCTCAGCGCTTCCTCTTACAACCGCATAGACGAAACTAGTCATCAGCATCACTGGTTGCATTGGGATAGCCCCGAATTCGGTGAATACTCCATGCTATCAACTCCAGTCATTTTCTTGAAAAACAAACCCGTTTCCGATCTCGGTGTGGTCGGAACTAGTAATGGGCTGGTATGCCTTGAGGCTGATCAGTTCTATAGTGATCGTTCTCCCACCTTGATTTGGAACCCATCTATTAGAAAAGTTGTCATGTTGCCTACACCACCTGTCTGTTTTACCTCCACCAAGTATGACAAGTACACAACGCATGGCTTTGGCTATGATGTACATTCCAATGACTACAAGATTTTAAGAGTTGTGACTCTTCTTGATGATCATTCAGACTTGTCCCGGTTTGCAACCGCGGTTCAGGTTTACTCTTTAGCCAGGGGATCCTGGAAGAGTCTTAGTGCTTCGGTTATACCTGTGGATTTGCAGGGTGGTTCCGAACGTCCTGCTTTTGTTAATGGTAATTTCCATACGCTTGAAGCCCGTTTAAGTGTGTATTACAATGACCATTACGAGGAGCACCATAAGTGTGGCGGAGACTCGTTCATCGGCACCTTCAATCTGGCAACTGAAGCATTTGGCGAGATAATGAGACCGGAAGCTTTGCGAGGAGGCAGTTGCTCTATATCAAGATATGGGGACTCCCTTGCTTTGATTAAGCATTTAATTATGATTTCAGAGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006351 GO:0006352 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016592 GO:0018130 GO:0019438 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0040034 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050789 GO:0050793 GO:0051239 GO:0065007 GO:0070013 GO:0071704 GO:0090213 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med12

Protein Analysis

305

Amino Acids

34.32

Weight (kDa)

6.3

Isoelectric Point (pI)

42.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	4 - 39	6.1e-08	F-box-like
F-box	PF00646	5 - 41	8.4e-10	F-box domain
b-prop_At3g26010-like	PF24750	97 - 254	7.7e-07	F-box protein At3g26010-like, beta-propeller
FBA_3	PF08268	111 - 298	5.1e-11	F-box associated beta propeller domain
FBA_1	PF07734	112 - 276	1e-13	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002990)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00450 AT4G00450 AT4G00450
fragaria_vesca	FvH4_7g14270 FvH4_7g14270 FvH4_7g14270
malus_domestica	MD01G1060600.v1.1 MD07G1137100.v1.1
prunus_persica	Prupe.2G170500_v2.0.a1 Prupe.2G170500_v2.0.a1 Prupe.2G170500_v2.0.a1 Prupe.2G170500_v2.0.a1 Prupe.2G170500_v2.0.a1 Prupe.2G170500_v2.0.a1 Prupe.2G170500_v2.0.a1 Prupe.2G170500_v2.0.a1 Prupe.2G170500_v2.0.a1 Prupe.2G170500_v2.0.a1 Prupe.2G170500_v2.0.a1 Prupe.2G170500_v2.0.a1
pyrus_communis	pycom01g09080 pycom07g13490
rosa_chinensis	RchiOBHm_Chr1g0355261
rosa_laevigata	RLG00000028166
rosa_multiflora	Rmu_sc0003115.1_g000044
rosa_roxburghii	Rroxscaffold_4G00300550
rosa_rugosa	Rorug01G0245800 Rorug01G0245900 Rorug01G0246000 Rorug01G0246100 Rorug01G0246200 Rorug01G0246200 Rorug01G0246200
rosa_samantha	Rh1AG258300 Rh1BG227900 Rh1CG242000 Rh1DG255700
rosa_wichuraiana	Rw1G022800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	782
AccII	CGCG	1 cut(s)	587
AciI	CCGC	5 cut(s)	139, 208, 585, 587, 765
AclWI	GGATC	2 cut(s)	609, 622
AcsI	RAATTY	1 cut(s)	260
AcuI	CTGAAG	1 cut(s)	822
AfaI	GTAC	2 cut(s)	482, 510
AfeI	AGCGCT	1 cut(s)	193
AfiI	CCNNNNNNNGG	3 cut(s)	263, 405, 745
AgsI	TTSAA	4 cut(s)	46, 304, 710, 790
AhlI	ACTAGT	2 cut(s)	221, 341
AjnI	CCWGG	2 cut(s)	608, 617
AluBI	AGCT	1 cut(s)	833
AluI	AGCT	1 cut(s)	833
Alw21I	GWGCWC	1 cut(s)	753
Alw26I	GTCTC	2 cut(s)	762, 817
AlwI	GGATC	2 cut(s)	609, 622
Aor51HI	AGCGCT	1 cut(s)	193
ApoI	RAATTY	1 cut(s)	260
AspLEI	GCGC	1 cut(s)	194
AsuC2I	CCSGG	1 cut(s)	574
AsuHPI	GGTGA	2 cut(s)	167, 278
BamHI	GGATCC	1 cut(s)	614
BanI	GGYRCC	1 cut(s)	782
BarI	GAAGNNNNNNTAC	2 cut(s)	12, 44
Bbv12I	GWGCWC	1 cut(s)	753
BccI	CCATC	2 cut(s)	141, 421
BcgI	CGANNNNNNTGC	4 cut(s)	130, 164, 659, 693
BciT130I	CCWGG	2 cut(s)	610, 619
BclI	TGATCA	2 cut(s)	370, 556
BcnI	CCSGG	1 cut(s)	574
BcoDI	GTCTC	2 cut(s)	762, 817
BcuI	ACTAGT	2 cut(s)	221, 341
BfaI	CTAG	3 cut(s)	222, 342, 916
BfmI	CTRYAG	1 cut(s)	379
BfoI	RGCGCY	1 cut(s)	195
BglII	AGATCT	1 cut(s)	912
Bme1390I	CCNGG	3 cut(s)	574, 610, 619
BmiI	GGNNCC	4 cut(s)	410, 616, 667, 784
BmrFI	CCNGG	3 cut(s)	574, 610, 619
BmsI	GCATC	1 cut(s)	241
BpmI	CTGGAG	1 cut(s)	273
BpuEI	CTTGAG	1 cut(s)	383
BpuMI	CCSGG	1 cut(s)	574
BsaI	GGTCTC	1 cut(s)	817
BsaJI	CCNNGG	2 cut(s)	585, 609
BsaWI	WCCGGW	1 cut(s)	826
Bsc4I	CCNNNNNNNGG	3 cut(s)	263, 405, 745
Bse1I	ACTGG	2 cut(s)	242, 290
BseBI	CCWGG	2 cut(s)	610, 619
BseDI	CCNNGG	2 cut(s)	585, 609
BseLI	CCNNNNNNNGG	3 cut(s)	263, 405, 745
BseMII	CTCAG	1 cut(s)	202
BseNI	ACTGG	2 cut(s)	242, 290
BseRI	GAGGAG	3 cut(s)	170, 761, 855
Bsh1236I	CGCG	1 cut(s)	587
BshNI	GGYRCC	1 cut(s)	782
BsiHKAI	GWGCWC	1 cut(s)	753
BsiSI	CCGG	2 cut(s)	574, 827
BslFI	GGGAC	3 cut(s)	115, 556, 884
BslI	CCNNNNNNNGG	3 cut(s)	263, 405, 745
BsmAI	GTCTC	2 cut(s)	762, 817
BsmFI	GGGAC	3 cut(s)	115, 556, 884
Bso31I	GGTCTC	1 cut(s)	817
Bsp1286I	GDGCHC	1 cut(s)	753
Bsp1407I	TGTACA	1 cut(s)	508
Bsp143I	GATC	6 cut(s)	322, 370, 385, 556, 614, 912
BspACI	CCGC	5 cut(s)	139, 208, 585, 587, 765
BspCNI	CTCAG	1 cut(s)	201
BspFNI	CGCG	1 cut(s)	587
BspLI	GGNNCC	4 cut(s)	410, 616, 667, 784
BspPI	GGATC	2 cut(s)	609, 622
BspT107I	GGYRCC	1 cut(s)	782
BspTNI	GGTCTC	1 cut(s)	817
BsrGI	TGTACA	1 cut(s)	508
BsrI	ACTGG	2 cut(s)	242, 290
BssECI	CCNNGG	2 cut(s)	585, 609
BssMI	GATC	6 cut(s)	322, 370, 385, 556, 614, 912
Bst2UI	CCWGG	2 cut(s)	610, 619
Bst6I	CTCTTC	2 cut(s)	552, 617
BstAUI	TGTACA	1 cut(s)	508
BstDEI	CTNAG	2 cut(s)	188, 629
BstDSI	CCRYGG	1 cut(s)	585
BstFNI	CGCG	1 cut(s)	587
BstH2I	RGCGCY	1 cut(s)	195
BstHHI	GCGC	1 cut(s)	194
BstKTI	GATC	6 cut(s)	325, 373, 388, 559, 617, 915
BstMAI	GTCTC	2 cut(s)	762, 817
BstMBI	GATC	6 cut(s)	322, 370, 385, 556, 614, 912
BstMWI	GCNNNNNNNGC	1 cut(s)	803
BstNI	CCWGG	2 cut(s)	610, 619
BstSCI	CCNGG	3 cut(s)	572, 608, 617
BstSFI	CTRYAG	1 cut(s)	379
BstUI	CGCG	1 cut(s)	587
BstX2I	RGATCY	2 cut(s)	614, 912
BstXI	CCANNNNNNTGG	1 cut(s)	761
BstYI	RGATCY	2 cut(s)	614, 912
BtgI	CCRYGG	1 cut(s)	585
BtsIMutI	CAGTG	1 cut(s)	235
CfoI	GCGC	1 cut(s)	194
Cfr42I	CCGCGG	1 cut(s)	588
Csp6I	GTAC	2 cut(s)	481, 509
CviAII	CATG	4 cut(s)	93, 277, 433, 491
CviJI	RGCY	8 cut(s)	255, 352, 368, 495, 501, 608, 713, 833
CviKI_1	RGCY	8 cut(s)	255, 352, 368, 495, 501, 608, 713, 833
CviQI	GTAC	2 cut(s)	481, 509
DdeI	CTNAG	2 cut(s)	188, 629
DpnI	GATC	6 cut(s)	324, 372, 387, 558, 616, 914
DpnII	GATC	6 cut(s)	322, 370, 385, 556, 614, 912
Eam1104I	CTCTTC	2 cut(s)	552, 617
EarI	CTCTTC	2 cut(s)	552, 617
EciI	GGCGGA	1 cut(s)	780
Eco31I	GGTCTC	1 cut(s)	817
Eco47III	AGCGCT	1 cut(s)	193
Eco57I	CTGAAG	1 cut(s)	822
EcoRI	GAATTC	1 cut(s)	260
EcoRII	CCWGG	2 cut(s)	608, 617
FaeI	CATG	4 cut(s)	96, 280, 436, 494
FaqI	GGGAC	3 cut(s)	115, 556, 884
FatI	CATG	4 cut(s)	92, 276, 432, 490
FbaI	TGATCA	2 cut(s)	370, 556
FspBI	CTAG	3 cut(s)	222, 342, 916
GlaI	GCGC	1 cut(s)	193
GsuI	CTGGAG	1 cut(s)	273
HaeII	RGCGCY	1 cut(s)	195
HapII	CCGG	2 cut(s)	574, 827
HhaI	GCGC	1 cut(s)	194
Hin1II	CATG	4 cut(s)	96, 280, 436, 494
Hin6I	GCGC	1 cut(s)	192
HinP1I	GCGC	1 cut(s)	192
HindIII	AAGCTT	1 cut(s)	831
HinfI	GANTC	6 cut(s)	152, 170, 544, 625, 770, 872
HpaII	CCGG	2 cut(s)	574, 827
HphI	GGTGA	2 cut(s)	167, 278
Hpy166II	GTNNAC	2 cut(s)	483, 598
Hpy188I	TCNGA	6 cut(s)	7, 322, 338, 565, 670, 910
Hpy188III	TCNNGA	4 cut(s)	17, 301, 551, 861
Hpy8I	GTNNAC	2 cut(s)	483, 598
HpyAV	CCTTC	4 cut(s)	23, 130, 194, 796
HpyCH4IV	ACGT	1 cut(s)	673
HpyCH4V	TGCA	4 cut(s)	87, 244, 581, 658
HpyF10VI	GCNNNNNNNGC	1 cut(s)	803
HpyF3I	CTNAG	2 cut(s)	188, 629
HpySE526I	ACGT	1 cut(s)	673
Hsp92II	CATG	4 cut(s)	96, 280, 436, 494
HspAI	GCGC	1 cut(s)	192
Ksp22I	TGATCA	2 cut(s)	370, 556
KspI	CCGCGG	1 cut(s)	588
Kzo9I	GATC	6 cut(s)	322, 370, 385, 556, 614, 912
LmnI	GCTCC	1 cut(s)	748
LweI	GCATC	1 cut(s)	241
MaeI	CTAG	3 cut(s)	222, 342, 916
MaeII	ACGT	1 cut(s)	673
MaeIII	GTNAC	2 cut(s)	99, 541
MalI	GATC	6 cut(s)	324, 372, 387, 558, 616, 914
MboI	GATC	6 cut(s)	322, 370, 385, 556, 614, 912
MboII	GAAGA	3 cut(s)	32, 539, 634
MflI	RGATCY	2 cut(s)	614, 912
MhlI	GDGCHC	1 cut(s)	753
MluCI	AATT	3 cut(s)	260, 694, 897
MlyI	GAGTC	6 cut(s)	146, 164, 538, 634, 764, 866
MmeI	TCCRAC	2 cut(s)	180, 316
MseI	TTAA	5 cut(s)	533, 687, 719, 888, 896
MslI	CAYNNNNRTG	2 cut(s)	516, 759
MspA1I	CMGCKG	1 cut(s)	587
MspI	CCGG	2 cut(s)	574, 827
MspR9I	CCNGG	3 cut(s)	574, 610, 619
MvaI	CCWGG	2 cut(s)	610, 619
MvnI	CGCG	1 cut(s)	587
MwoI	GCNNNNNNNGC	1 cut(s)	803
NciI	CCSGG	1 cut(s)	574
NdeII	GATC	6 cut(s)	322, 370, 385, 556, 614, 912
NlaIII	CATG	4 cut(s)	96, 280, 436, 494
NlaIV	GGNNCC	4 cut(s)	410, 616, 667, 784
NmuCI	GTSAC	2 cut(s)	99, 541
PcsI	WCGNNNNNNNCGW	2 cut(s)	156, 165
PfoI	TCCNGGA	1 cut(s)	617
PleI	GAGTC	6 cut(s)	146, 164, 538, 633, 764, 866
PpsI	GAGTC	6 cut(s)	146, 164, 538, 633, 764, 866
Psp6I	CCWGG	2 cut(s)	608, 617
PspGI	CCWGG	2 cut(s)	608, 617
PspN4I	GGNNCC	4 cut(s)	410, 616, 667, 784
PsuI	RGATCY	2 cut(s)	614, 912
RsaI	GTAC	2 cut(s)	482, 510
RsaNI	GTAC	2 cut(s)	481, 509
RseI	CAYNNNNRTG	2 cut(s)	516, 759
SacII	CCGCGG	1 cut(s)	588
SaqAI	TTAA	5 cut(s)	533, 687, 719, 888, 896
Sau3AI	GATC	6 cut(s)	322, 370, 385, 556, 614, 912
SchI	GAGTC	6 cut(s)	146, 164, 538, 634, 764, 866
ScrFI	CCNGG	3 cut(s)	574, 610, 619
SduI	GDGCHC	1 cut(s)	753
SfaNI	GCATC	1 cut(s)	241
SfcI	CTRYAG	1 cut(s)	379
Sfr303I	CCGCGG	1 cut(s)	588
SgrBI	CCGCGG	1 cut(s)	588
SmiMI	CAYNNNNRTG	2 cut(s)	516, 759
SmlI	CTYRAG	1 cut(s)	362
SmoI	CTYRAG	1 cut(s)	362
SpeI	ACTAGT	2 cut(s)	221, 341
Sse9I	AATT	3 cut(s)	260, 694, 897
SsiI	CCGC	5 cut(s)	139, 208, 585, 587, 765
SspMI	CTAG	3 cut(s)	222, 342, 916
StyD4I	CCNGG	3 cut(s)	572, 608, 617
TaiI	ACGT	1 cut(s)	676
TaqI	TCGA	1 cut(s)	150
TasI	AATT	3 cut(s)	260, 694, 897
TatI	WGTACW	2 cut(s)	480, 508
Tru1I	TTAA	5 cut(s)	533, 687, 719, 888, 896
Tru9I	TTAA	5 cut(s)	533, 687, 719, 888, 896
TscAI	CASTG	1 cut(s)	242
TseFI	GTSAC	2 cut(s)	99, 541
Tsp45I	GTSAC	2 cut(s)	99, 541
TspDTI	ATGAA	2 cut(s)	112, 766
TspRI	CASTG	1 cut(s)	242
XapI	RAATTY	1 cut(s)	260
XspI	CTAG	3 cut(s)	222, 342, 916

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.