Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002990

Physical Location & Seq

Genomic Coordinates Reverse (-)

35323547 .. 35326883

Gene Structure 3337 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0246200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGCAAAGCGAAAGGCAAGGCAGACGCGGTTTCTCTCGCTCAGATGAGCTGTTAAATAGTTTCCCGGGATTTGGATCTCGTAGAAGCATGTTGCCTAGCCTCTTTAGTGGAAGGGATCCATTTGATGATCCCTTCTTCAGTCGGCCGCTTGGAGACATGTTTGAGTCTAGCATGCTCGGTCCAAGTGCTGCTTCTAGTGATACACAAGAGAGTGGTAGAGATGGGGGCATCATAGTAGAAGAACTAGACTCTGATGATGATGGAGAGGAAGATGAGGTTACTGGAGATGGGAGAGATAAGAGGAAGCAACGAGTTGTGTCAAGCAAAGAGCCGTCTGTTGAGCATCCGGATGATGATGATATGGATGCAGAAGAGACGGGCAAGAACACGAGTAAAAGAGGTGATTTCAACAAGGTTCAAGGCACACAGCCCCAAAGTCGTAGTGCCTCTGTTCAGAGTTGCAGAGTCACATATGGTGGTGTAGATGGAGCATATTACACTTCTACACGAACCAGAAGGGCAGGCAATGATGGCCAGGTGAAGATTGAGGAGACCAAAGAAGCAGATAGGACAACTGGTCGAGCAACACATAAGATATCTAGAGGAATTCATGATAAGGGTCATTCTGTTACAAGGAAGCTTAACCCAGATGGAAAGGTGGATATGTTGCAAACTTTACACAATCTGAATGAAGATGAGCTTGCTGGTTTTGAAGAAGCATGGAATGGTAATGTTAAGGTGGACTTACCTGGCTGGAAAGAATTTGACAACCTTGGTAATGCTAGTGAACGGAAGGGCAATGCACCTTGGAGTGCTGGGCTCCTTCAATCTTCAGAGCAACCACAAAGCTCCAGAGGGATTAGACCAGGGAATGTAACCGGGATTACCTCTGATGGGAGAACCAAGAAGGTTGTTAGAATCAATATAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006351 GO:0006352 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016592 GO:0018130 GO:0019438 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0040034 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050789 GO:0050793 GO:0051239 GO:0065007 GO:0070013 GO:0071704 GO:0090213 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med12

Protein Analysis

310

Amino Acids

34.05

Weight (kDa)

5.21

Isoelectric Point (pI)

54.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mlf1IP	PF10248	93 - 243	1e-19	Myelodysplasia-myeloid leukemia factor 1-interacting protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002990)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00450 AT4G00450 AT4G00450
fragaria_vesca	FvH4_7g14270 FvH4_7g14270 FvH4_7g14270
malus_domestica	MD01G1060600.v1.1 MD07G1137100.v1.1
prunus_persica	Prupe.2G170500_v2.0.a1 Prupe.2G170500_v2.0.a1 Prupe.2G170500_v2.0.a1 Prupe.2G170500_v2.0.a1 Prupe.2G170500_v2.0.a1 Prupe.2G170500_v2.0.a1 Prupe.2G170500_v2.0.a1 Prupe.2G170500_v2.0.a1 Prupe.2G170500_v2.0.a1 Prupe.2G170500_v2.0.a1 Prupe.2G170500_v2.0.a1 Prupe.2G170500_v2.0.a1
pyrus_communis	pycom01g09080 pycom07g13490
rosa_chinensis	RchiOBHm_Chr1g0355261
rosa_laevigata	RLG00000028166
rosa_multiflora	Rmu_sc0003115.1_g000044
rosa_roxburghii	Rroxscaffold_4G00300550
rosa_rugosa	Rorug01G0245800 Rorug01G0245900 Rorug01G0246000 Rorug01G0246100 Rorug01G0246200 Rorug01G0246200 Rorug01G0246200
rosa_samantha	Rh1AG258300 Rh1BG227900 Rh1CG242000 Rh1DG255700
rosa_wichuraiana	Rw1G022800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	27
AccIII	TCCGGA	1 cut(s)	346
AciI	CCGC	2 cut(s)	27, 146
AclWI	GGATC	4 cut(s)	82, 110, 122, 123
AcoI	YGGCCR	2 cut(s)	143, 532
AcsI	RAATTY	2 cut(s)	606, 761
AcuI	CTGAAG	2 cut(s)	121, 816
AfiI	CCNNNNNNNGG	2 cut(s)	71, 894
AflIII	ACRYGT	1 cut(s)	156
AgsI	TTSAA	4 cut(s)	409, 419, 713, 827
AhdI	GACNNNNNGTC	1 cut(s)	576
AjnI	CCWGG	3 cut(s)	534, 748, 865
AjuI	GAANNNNNNNTTGG	2 cut(s)	175, 207
AluBI	AGCT	4 cut(s)	49, 640, 700, 849
AluI	AGCT	4 cut(s)	49, 640, 700, 849
Alw26I	GTCTC	3 cut(s)	147, 368, 545
AlwI	GGATC	4 cut(s)	82, 110, 122, 123
Ama87I	CYCGRG	1 cut(s)	64
Aor13HI	TCCGGA	1 cut(s)	346
AoxI	GGCC	2 cut(s)	143, 532
ApeKI	GCWGC	1 cut(s)	188
ApoI	RAATTY	2 cut(s)	606, 761
AspS9I	GGNCC	1 cut(s)	179
AsuC2I	CCSGG	3 cut(s)	65, 66, 880
AsuHPI	GGTGA	2 cut(s)	413, 550
AvaI	CYCGRG	1 cut(s)	64
AvaII	GGWCC	1 cut(s)	179
BalI	TGGCCA	1 cut(s)	534
BamHI	GGATCC	1 cut(s)	115
BanII	GRGCYC	1 cut(s)	822
BauI	CACGAG	1 cut(s)	388
BbvI	GCAGC	1 cut(s)	175
BccI	CCATC	7 cut(s)	215, 254, 281, 479, 524, 644, 887
BceAI	ACGGC	1 cut(s)	316
BciT130I	CCWGG	3 cut(s)	536, 750, 867
BcnI	CCSGG	3 cut(s)	65, 66, 880
BcoDI	GTCTC	3 cut(s)	147, 368, 545
BfaI	CTAG	6 cut(s)	96, 168, 195, 245, 600, 783
BisI	GCNGC	2 cut(s)	146, 189
BlsI	GCNGC	2 cut(s)	147, 190
Bme1390I	CCNGG	6 cut(s)	65, 66, 536, 750, 867, 880
Bme18I	GGWCC	1 cut(s)	179
BmeRI	GACNNNNNGTC	1 cut(s)	576
BmeT110I	CYCGRG	1 cut(s)	64
BmgT120I	GGNCC	1 cut(s)	179
BmiI	GGNNCC	2 cut(s)	117, 821
BmrFI	CCNGG	6 cut(s)	65, 66, 536, 750, 867, 880
BmsI	GCATC	3 cut(s)	237, 352, 355
BpmI	CTGGAG	2 cut(s)	303, 835
BpuMI	CCSGG	3 cut(s)	65, 66, 880
BsaBI	GATNNNNATC	1 cut(s)	73
BsaI	GGTCTC	1 cut(s)	545
BsaJI	CCNNGG	4 cut(s)	64, 772, 806, 866
BsaWI	WCCGGW	1 cut(s)	346
Bsc4I	CCNNNNNNNGG	2 cut(s)	71, 894
Bse1I	ACTGG	2 cut(s)	286, 580
Bse3DI	GCAATG	2 cut(s)	532, 805
Bse8I	GATNNNNATC	1 cut(s)	73
BseAI	TCCGGA	1 cut(s)	346
BseBI	CCWGG	3 cut(s)	536, 750, 867
BseDI	CCNNGG	4 cut(s)	64, 772, 806, 866
BseGI	GGATG	3 cut(s)	343, 355, 370
BseJI	GATNNNNATC	1 cut(s)	73
BseLI	CCNNNNNNNGG	2 cut(s)	71, 894
BseMI	GCAATG	2 cut(s)	532, 805
BseMII	CTCAG	1 cut(s)	54
BseNI	ACTGG	2 cut(s)	286, 580
BseRI	GAGGAG	1 cut(s)	563
BseX3I	CGGCCG	1 cut(s)	143
BseXI	GCAGC	1 cut(s)	175
BseYI	CCCAGC	1 cut(s)	815
Bsh1236I	CGCG	1 cut(s)	27
Bsh1285I	CGRYCG	1 cut(s)	146
BshFI	GGCC	2 cut(s)	145, 534
BsiEI	CGRYCG	1 cut(s)	146
BsiHKCI	CYCGRG	1 cut(s)	64
BsiSI	CCGG	3 cut(s)	65, 347, 879
BslI	CCNNNNNNNGG	2 cut(s)	71, 894
BsmAI	GTCTC	3 cut(s)	147, 368, 545
BsmBI	CGTCTC	1 cut(s)	368
BsnI	GGCC	2 cut(s)	145, 534
Bso31I	GGTCTC	1 cut(s)	545
BsoBI	CYCGRG	1 cut(s)	64
Bsp1286I	GDGCHC	1 cut(s)	822
Bsp13I	TCCGGA	1 cut(s)	346
Bsp143I	GATC	3 cut(s)	74, 115, 127
BspACI	CCGC	2 cut(s)	27, 146
BspANI	GGCC	2 cut(s)	145, 534
BspCNI	CTCAG	1 cut(s)	53
BspEI	TCCGGA	1 cut(s)	346
BspFNI	CGCG	1 cut(s)	27
BspHI	TCATGA	1 cut(s)	610
BspLI	GGNNCC	2 cut(s)	117, 821
BspPI	GGATC	4 cut(s)	82, 110, 122, 123
BspTNI	GGTCTC	1 cut(s)	545
BsrDI	GCAATG	2 cut(s)	532, 805
BsrI	ACTGG	2 cut(s)	286, 580
BssECI	CCNNGG	4 cut(s)	64, 772, 806, 866
BssMI	GATC	3 cut(s)	74, 115, 127
BssSI	CACGAG	1 cut(s)	388
BssT1I	CCWWGG	2 cut(s)	772, 806
Bst2BI	CACGAG	1 cut(s)	388
Bst2UI	CCWGG	3 cut(s)	536, 750, 867
Bst6I	CTCTTC	1 cut(s)	366
BstC8I	GCNNGC	3 cut(s)	173, 523, 702
BstDEI	CTNAG	1 cut(s)	40
BstF5I	GGATG	3 cut(s)	343, 355, 370
BstFNI	CGCG	1 cut(s)	27
BstKTI	GATC	3 cut(s)	77, 118, 130
BstMAI	GTCTC	3 cut(s)	147, 368, 545
BstMBI	GATC	3 cut(s)	74, 115, 127
BstMCI	CGRYCG	1 cut(s)	146
BstMWI	GCNNNNNNNGC	1 cut(s)	531
BstNI	CCWGG	3 cut(s)	536, 750, 867
BstNSI	RCATGY	3 cut(s)	91, 160, 175
BstSCI	CCNGG	6 cut(s)	63, 64, 534, 748, 865, 878
BstUI	CGCG	1 cut(s)	27
BstV1I	GCAGC	1 cut(s)	175
BstX2I	RGATCY	2 cut(s)	74, 115
BstYI	RGATCY	2 cut(s)	74, 115
BstZI	CGGCCG	1 cut(s)	143
BsuRI	GGCC	2 cut(s)	145, 534
BtsCI	GGATG	3 cut(s)	343, 355, 370
Cac8I	GCNNGC	3 cut(s)	173, 523, 702
CciI	TCATGA	1 cut(s)	610
Cfr13I	GGNCC	1 cut(s)	179
Cfr9I	CCCGGG	1 cut(s)	64
CseI	GACGC	1 cut(s)	33
CviAII	CATG	5 cut(s)	88, 157, 172, 611, 720
DdeI	CTNAG	1 cut(s)	40
DpnI	GATC	3 cut(s)	76, 117, 129
DpnII	GATC	3 cut(s)	74, 115, 127
DriI	GACNNNNNGTC	1 cut(s)	576
EaeI	YGGCCR	2 cut(s)	143, 532
EagI	CGGCCG	1 cut(s)	143
Eam1104I	CTCTTC	1 cut(s)	366
Eam1105I	GACNNNNNGTC	1 cut(s)	576
EarI	CTCTTC	1 cut(s)	366
EclXI	CGGCCG	1 cut(s)	143
Eco130I	CCWWGG	2 cut(s)	772, 806
Eco24I	GRGCYC	1 cut(s)	822
Eco31I	GGTCTC	1 cut(s)	545
Eco32I	GATATC	1 cut(s)	597
Eco47I	GGWCC	1 cut(s)	179
Eco52I	CGGCCG	1 cut(s)	143
Eco57I	CTGAAG	2 cut(s)	121, 816
Eco88I	CYCGRG	1 cut(s)	64
EcoRI	GAATTC	1 cut(s)	606
EcoRII	CCWGG	3 cut(s)	534, 748, 865
EcoRV	GATATC	1 cut(s)	597
EcoT14I	CCWWGG	2 cut(s)	772, 806
EcoT38I	GRGCYC	1 cut(s)	822
ErhI	CCWWGG	2 cut(s)	772, 806
Esp3I	CGTCTC	1 cut(s)	368
FaeI	CATG	5 cut(s)	91, 160, 175, 614, 723
FalI	AAGNNNNNCTT	6 cut(s)	175, 207, 684, 716, 728, 760
FatI	CATG	5 cut(s)	87, 156, 171, 610, 719
FauNDI	CATATG	1 cut(s)	472
Fnu4HI	GCNGC	2 cut(s)	146, 189
FokI	GGATG	3 cut(s)	330, 362, 377
FriOI	GRGCYC	1 cut(s)	822
Fsp4HI	GCNGC	2 cut(s)	146, 189
FspBI	CTAG	6 cut(s)	96, 168, 195, 245, 600, 783
GluI	GCNGC	2 cut(s)	146, 189
GsaI	CCCAGC	1 cut(s)	819
GsuI	CTGGAG	2 cut(s)	303, 835
HaeIII	GGCC	2 cut(s)	145, 534
HapII	CCGG	3 cut(s)	65, 347, 879
HgaI	GACGC	1 cut(s)	33
Hin1II	CATG	5 cut(s)	91, 160, 175, 614, 723
HindIII	AAGCTT	1 cut(s)	638
HinfI	GANTC	4 cut(s)	164, 248, 465, 918
HpaII	CCGG	3 cut(s)	65, 347, 879
HphI	GGTGA	2 cut(s)	413, 550
Hpy166II	GTNNAC	2 cut(s)	742, 788
Hpy188I	TCNGA	6 cut(s)	43, 253, 456, 687, 835, 892
Hpy188III	TCNNGA	4 cut(s)	347, 600, 611, 852
Hpy8I	GTNNAC	2 cut(s)	742, 788
HpyAV	CCTTC	6 cut(s)	105, 142, 510, 787, 833, 901
HpyCH4V	TGCA	5 cut(s)	4, 368, 462, 670, 803
HpyF10VI	GCNNNNNNNGC	1 cut(s)	531
HpyF3I	CTNAG	1 cut(s)	40
Hsp92II	CATG	5 cut(s)	91, 160, 175, 614, 723
Kpn2I	TCCGGA	1 cut(s)	346
Kzo9I	GATC	3 cut(s)	74, 115, 127
LmnI	GCTCC	3 cut(s)	488, 825, 854
Lsp1109I	GCAGC	1 cut(s)	175
LweI	GCATC	3 cut(s)	237, 352, 355
MaeI	CTAG	6 cut(s)	96, 168, 195, 245, 600, 783
MaeIII	GTNAC	4 cut(s)	277, 466, 628, 874
MalI	GATC	3 cut(s)	76, 117, 129
MboI	GATC	3 cut(s)	74, 115, 127
MboII	GAAGA	8 cut(s)	127, 251, 281, 383, 553, 704, 725, 822
MflI	RGATCY	2 cut(s)	74, 115
MhlI	GDGCHC	1 cut(s)	822
MlsI	TGGCCA	1 cut(s)	534
MluCI	AATT	2 cut(s)	606, 761
MluNI	TGGCCA	1 cut(s)	534
MlyI	GAGTC	3 cut(s)	173, 242, 474
Mox20I	TGGCCA	1 cut(s)	534
MroI	TCCGGA	1 cut(s)	346
MscI	TGGCCA	1 cut(s)	534
MseI	TTAA	3 cut(s)	53, 642, 735
MslI	CAYNNNNRTG	1 cut(s)	348
Msp20I	TGGCCA	1 cut(s)	534
MspI	CCGG	3 cut(s)	65, 347, 879
MspR9I	CCNGG	6 cut(s)	65, 66, 536, 750, 867, 880
MvaI	CCWGG	3 cut(s)	536, 750, 867
MvnI	CGCG	1 cut(s)	27
MwoI	GCNNNNNNNGC	1 cut(s)	531
NciI	CCSGG	3 cut(s)	65, 66, 880
NdeI	CATATG	1 cut(s)	472
NdeII	GATC	3 cut(s)	74, 115, 127
NlaIII	CATG	5 cut(s)	91, 160, 175, 614, 723
NlaIV	GGNNCC	2 cut(s)	117, 821
NmuCI	GTSAC	1 cut(s)	466
NspI	RCATGY	3 cut(s)	91, 160, 175
PaeI	GCATGC	1 cut(s)	175
PagI	TCATGA	1 cut(s)	610
PciI	ACATGT	1 cut(s)	156
PfeI	GAWTC	1 cut(s)	918
PkrI	GCNGC	2 cut(s)	147, 190
PleI	GAGTC	3 cut(s)	172, 242, 473
PpsI	GAGTC	3 cut(s)	172, 242, 473
PscI	ACATGT	1 cut(s)	156
Psp6I	CCWGG	3 cut(s)	534, 748, 865
PspFI	CCCAGC	1 cut(s)	815
PspGI	CCWGG	3 cut(s)	534, 748, 865
PspN4I	GGNNCC	2 cut(s)	117, 821
PspPI	GGNCC	1 cut(s)	179
PsuI	RGATCY	2 cut(s)	74, 115
RseI	CAYNNNNRTG	1 cut(s)	348
SaqAI	TTAA	3 cut(s)	53, 642, 735
SatI	GCNGC	2 cut(s)	146, 189
Sau3AI	GATC	3 cut(s)	74, 115, 127
Sau96I	GGNCC	1 cut(s)	179
SchI	GAGTC	3 cut(s)	173, 242, 474
ScrFI	CCNGG	6 cut(s)	65, 66, 536, 750, 867, 880
SduI	GDGCHC	1 cut(s)	822
SfaNI	GCATC	3 cut(s)	237, 352, 355
SinI	GGWCC	1 cut(s)	179
SmaI	CCCGGG	1 cut(s)	66
SmiMI	CAYNNNNRTG	1 cut(s)	348
SphI	GCATGC	1 cut(s)	175
Sse9I	AATT	2 cut(s)	606, 761
SsiI	CCGC	2 cut(s)	27, 146
SspMI	CTAG	6 cut(s)	96, 168, 195, 245, 600, 783
StyD4I	CCNGG	6 cut(s)	63, 64, 534, 748, 865, 878
StyI	CCWWGG	2 cut(s)	772, 806
TaqI	TCGA	1 cut(s)	580
TaqII	GACCGA	1 cut(s)	167
TasI	AATT	2 cut(s)	606, 761
TauI	GCSGC	1 cut(s)	148
TfiI	GAWTC	1 cut(s)	918
Tru1I	TTAA	3 cut(s)	53, 642, 735
Tru9I	TTAA	3 cut(s)	53, 642, 735
TseFI	GTSAC	1 cut(s)	466
TseI	GCWGC	1 cut(s)	188
Tsp45I	GTSAC	1 cut(s)	466
TspDTI	ATGAA	2 cut(s)	599, 705
TspGWI	ACGGA	1 cut(s)	805
TspMI	CCCGGG	1 cut(s)	64
VpaK11BI	GGWCC	1 cut(s)	179
XapI	RAATTY	2 cut(s)	606, 761
XbaI	TCTAGA	1 cut(s)	599
XceI	RCATGY	3 cut(s)	91, 160, 175
XmaI	CCCGGG	1 cut(s)	64
XspI	CTAG	6 cut(s)	96, 168, 195, 245, 600, 783

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.