Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0009616

Physical Location & Seq

Genomic Coordinates Forward (+)

19384569 .. 19387344

Gene Structure 2776 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGTCTGGCCTCCCTCGGTCATCGAGTGCTCCACTGAAGAATGGCCTTCCTCCCCAAGAACTCCTTGATGATCTGTGCAGCCGGTTTGTTCTAAATGTACCAAAAGAAGACCTGCAATCATTTGAGAGGATTTTATTTCTCGTGGAATATGCTCATTGGTTTTATGAGGACAACTCAGTGGAGAAAAATCCATCGCTGAAGTCATTCAATTTGAAGGAGTTCACTTCTTTATTGTTTAACAGCTGTGATGTTCTTAAACCTTATGTTGCCCATATAGATGACATATTCAAGGACTTCACTTCTTACAAGGTCAAGGTTCCTGTAACTGGCGCAATCATTTTGGATGAAACCTTTGAAAGGTGCTTGCTCGTGAAGGGATGGAAAGGATCAAGTTGGAGTTTCCCTCGTGGCAAAAAGAACAAAGATGAAGAAGACCATGCATGTGCCATCAGAGAAGTCCAGGAAGAAACAGGTTTTGATGTTACAAAGCTTCTTGACAAAGATGAGTATATTGAATTTATATTTGGACAACAAAGGGTGCGGCTCTACATTATTGCTGGTGTGAGAGAGGATACCGCCTTTGCACCACTCACCAAAAAGGAGATCAGTGAAATCGCATGGCACCGGCTGGATGATCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000166 GO:0000287 GO:0000288 GO:0000290 GO:0000291 GO:0000932 GO:0000956 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0003824 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005845 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009892 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010072 GO:0010154 GO:0010468 GO:0010494 GO:0010605 GO:0010608 GO:0010629 GO:0016032 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0019048 GO:0019222 GO:0019439 GO:0022414 GO:0030145 GO:0030554 GO:0031086 GO:0031087 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032991 GO:0034428 GO:0034518 GO:0034641 GO:0034655 GO:0035639 GO:0035770 GO:0035821 GO:0036094 GO:0036464 GO:0040029 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044003 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0046872 GO:0046914 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050072 GO:0050789 GO:0051701 GO:0051704 GO:0051817 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0090304 GO:0090305 GO:0090421 GO:0097159 GO:0097367 GO:0098745 GO:1901265 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

DCP2 NUDIX

Protein Analysis

214

Amino Acids

24.62

Weight (kDa)

5.14

Isoelectric Point (pI)

49.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DCP2	PF05026	20 - 102	1.5e-30	Dcp2, box A domain
NUDIX	PF00293	107 - 213	9.9e-16	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009616)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13570 AT5G13570
fragaria_vesca	FvH4_2g18840
malus_domestica	MD01G1108400.v1.1 MD07G1174600.v1.1
prunus_persica	Prupe.2G213500_v2.0.a1 Prupe.2G213500_v2.0.a1 Prupe.2G213500_v2.0.a1
pyrus_communis	pycom01g13540 pycom07g16890
rosa_chinensis	RchiOBHm_Chr6g0284661
rosa_laevigata	RLG00000012733
rosa_multiflora	Rmu_sc0004879.1_g000009
rosa_roxburghii	Rroxscaffold_7G00184530
rosa_rugosa	Rorug06G0164900 Rorug06G0165000
rosa_samantha	Rh6AG278100 Rh6BG278100 Rh6CG280400 Rh6DG273100
rosa_wichuraiana	Rw6G023860 Rw6G023910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	120
AccB1I	GGYRCC	1 cut(s)	621
AciI	CCGC	2 cut(s)	541, 576
AclWI	GGATC	1 cut(s)	394
AcsI	RAATTY	1 cut(s)	515
AcuI	CTGAAG	2 cut(s)	56, 218
AfaI	GTAC	1 cut(s)	99
AfiI	CCNNNNNNNGG	2 cut(s)	326, 357
AgsI	TTSAA	5 cut(s)	208, 214, 289, 356, 515
AjnI	CCWGG	1 cut(s)	459
AjuI	GAANNNNNNNTTGG	2 cut(s)	507, 539
AluBI	AGCT	2 cut(s)	243, 490
AluI	AGCT	2 cut(s)	243, 490
Alw21I	GWGCWC	1 cut(s)	31
AlwI	GGATC	1 cut(s)	394
AoxI	GGCC	2 cut(s)	7, 43
ApeKI	GCWGC	1 cut(s)	78
ApoI	RAATTY	1 cut(s)	515
Asp700I	GAANNNNTTC	2 cut(s)	203, 218
AspLEI	GCGC	1 cut(s)	332
AsuHPI	GGTGA	1 cut(s)	583
BanI	GGYRCC	1 cut(s)	621
BauI	CACGAG	3 cut(s)	140, 368, 405
BbsI	GAAGAC	2 cut(s)	114, 438
Bbv12I	GWGCWC	1 cut(s)	31
BbvI	GCAGC	1 cut(s)	90
BccI	CCATC	3 cut(s)	199, 372, 455
BciT130I	CCWGG	1 cut(s)	461
BciVI	GTATCC	1 cut(s)	565
BfuAI	ACCTGC	1 cut(s)	120
BfuI	GTATCC	1 cut(s)	565
BisI	GCNGC	2 cut(s)	79, 542
BlsI	GCNGC	2 cut(s)	80, 543
Bme1390I	CCNGG	1 cut(s)	461
BmiI	GGNNCC	2 cut(s)	318, 623
BmrFI	CCNGG	1 cut(s)	461
BpiI	GAAGAC	2 cut(s)	114, 438
BplI	GAGNNNNNCTC	4 cut(s)	158, 190, 388, 420
BsaJI	CCNNGG	1 cut(s)	14
Bsc4I	CCNNNNNNNGG	2 cut(s)	326, 357
Bse118I	RCCGGY	2 cut(s)	81, 624
Bse1I	ACTGG	1 cut(s)	331
BseBI	CCWGG	1 cut(s)	461
BseDI	CCNNGG	1 cut(s)	14
BseGI	GGATG	3 cut(s)	349, 383, 637
BseLI	CCNNNNNNNGG	2 cut(s)	326, 357
BseMII	CTCAG	1 cut(s)	189
BseNI	ACTGG	1 cut(s)	331
BseXI	GCAGC	1 cut(s)	90
BsgI	GTGCAG	1 cut(s)	97
BshFI	GGCC	2 cut(s)	9, 45
BshNI	GGYRCC	1 cut(s)	621
BsiHKAI	GWGCWC	1 cut(s)	31
BsiSI	CCGG	2 cut(s)	82, 625
BslI	CCNNNNNNNGG	2 cut(s)	326, 357
BsnI	GGCC	2 cut(s)	9, 45
Bsp1286I	GDGCHC	1 cut(s)	31
Bsp143I	GATC	4 cut(s)	70, 386, 603, 634
BspACI	CCGC	2 cut(s)	541, 576
BspANI	GGCC	2 cut(s)	9, 45
BspCNI	CTCAG	1 cut(s)	188
BspLI	GGNNCC	2 cut(s)	318, 623
BspMI	ACCTGC	1 cut(s)	120
BspPI	GGATC	1 cut(s)	394
BspT107I	GGYRCC	1 cut(s)	621
BsrFI	RCCGGY	2 cut(s)	81, 624
BsrI	ACTGG	1 cut(s)	331
BssAI	RCCGGY	2 cut(s)	81, 624
BssECI	CCNNGG	1 cut(s)	14
BssMI	GATC	4 cut(s)	70, 386, 603, 634
BssSI	CACGAG	3 cut(s)	140, 368, 405
Bst2BI	CACGAG	3 cut(s)	140, 368, 405
Bst2UI	CCWGG	1 cut(s)	461
BstC8I	GCNNGC	1 cut(s)	365
BstDEI	CTNAG	1 cut(s)	175
BstENI	CCTNNNNNAGG	1 cut(s)	355
BstF5I	GGATG	3 cut(s)	349, 383, 637
BstHHI	GCGC	1 cut(s)	332
BstKTI	GATC	4 cut(s)	73, 389, 606, 637
BstMBI	GATC	4 cut(s)	70, 386, 603, 634
BstNI	CCWGG	1 cut(s)	461
BstNSI	RCATGY	1 cut(s)	444
BstSCI	CCNGG	1 cut(s)	459
BstV1I	GCAGC	1 cut(s)	90
BstV2I	GAAGAC	2 cut(s)	114, 438
BsuI	GTATCC	1 cut(s)	565
BsuRI	GGCC	2 cut(s)	9, 45
BtgZI	GCGATG	1 cut(s)	177
BtsCI	GGATG	3 cut(s)	349, 383, 637
BtsIMutI	CAGTG	3 cut(s)	32, 183, 613
BveI	ACCTGC	1 cut(s)	120
Cac8I	GCNNGC	1 cut(s)	365
CfoI	GCGC	1 cut(s)	332
Cfr10I	RCCGGY	2 cut(s)	81, 624
Csp6I	GTAC	1 cut(s)	98
CviAII	CATG	3 cut(s)	437, 441, 618
CviJI	RGCY	7 cut(s)	9, 45, 81, 243, 490, 544, 628
CviKI_1	RGCY	7 cut(s)	9, 45, 81, 243, 490, 544, 628
CviQI	GTAC	1 cut(s)	98
DdeI	CTNAG	1 cut(s)	175
DpnI	GATC	4 cut(s)	72, 388, 605, 636
DpnII	GATC	4 cut(s)	70, 386, 603, 634
Eco57I	CTGAAG	2 cut(s)	56, 218
EcoNI	CCTNNNNNAGG	1 cut(s)	355
EcoRII	CCWGG	1 cut(s)	459
EcoT22I	ATGCAT	1 cut(s)	442
FaeI	CATG	3 cut(s)	440, 444, 621
FalI	AAGNNNNNCTT	2 cut(s)	48, 80
FatI	CATG	3 cut(s)	436, 440, 617
Fnu4HI	GCNGC	2 cut(s)	79, 542
FokI	GGATG	2 cut(s)	356, 390
Fsp4HI	GCNGC	2 cut(s)	79, 542
GlaI	GCGC	1 cut(s)	331
GluI	GCNGC	2 cut(s)	79, 542
HaeIII	GGCC	2 cut(s)	9, 45
HapII	CCGG	2 cut(s)	82, 625
HhaI	GCGC	1 cut(s)	332
Hin1II	CATG	3 cut(s)	440, 444, 621
Hin6I	GCGC	1 cut(s)	330
HinP1I	GCGC	1 cut(s)	330
HindIII	AAGCTT	1 cut(s)	488
HpaII	CCGG	2 cut(s)	82, 625
HphI	GGTGA	1 cut(s)	583
Hpy166II	GTNNAC	1 cut(s)	222
Hpy188I	TCNGA	1 cut(s)	452
Hpy188III	TCNNGA	2 cut(s)	370, 494
Hpy8I	GTNNAC	1 cut(s)	222
HpyAV	CCTTC	3 cut(s)	56, 208, 367
HpyCH4V	TGCA	4 cut(s)	78, 115, 440, 584
HpyF3I	CTNAG	1 cut(s)	175
Hsp92II	CATG	3 cut(s)	440, 444, 621
HspAI	GCGC	1 cut(s)	330
Kzo9I	GATC	4 cut(s)	70, 386, 603, 634
LmnI	GCTCC	1 cut(s)	34
Lsp1109I	GCAGC	1 cut(s)	90
MaeIII	GTNAC	2 cut(s)	322, 481
MalI	GATC	4 cut(s)	72, 388, 605, 636
MboI	GATC	4 cut(s)	70, 386, 603, 634
MboII	GAAGA	5 cut(s)	49, 119, 440, 443, 476
MhlI	GDGCHC	1 cut(s)	31
MluCI	AATT	2 cut(s)	208, 515
MmeI	TCCRAC	1 cut(s)	374
MnlI	CCTC	7 cut(s)	20, 24, 60, 120, 160, 414, 562
Mph1103I	ATGCAT	1 cut(s)	442
MroXI	GAANNNNTTC	2 cut(s)	203, 218
MseI	TTAA	2 cut(s)	237, 255
MslI	CAYNNNNRTG	2 cut(s)	276, 441
MspA1I	CMGCKG	1 cut(s)	243
MspI	CCGG	2 cut(s)	82, 625
MspR9I	CCNGG	1 cut(s)	461
MvaI	CCWGG	1 cut(s)	461
NdeII	GATC	4 cut(s)	70, 386, 603, 634
NlaIII	CATG	3 cut(s)	440, 444, 621
NlaIV	GGNNCC	2 cut(s)	318, 623
NsiI	ATGCAT	1 cut(s)	442
NspI	RCATGY	1 cut(s)	444
PdmI	GAANNNNTTC	2 cut(s)	203, 218
PfoI	TCCNGGA	1 cut(s)	459
PkrI	GCNGC	2 cut(s)	80, 543
Psp6I	CCWGG	1 cut(s)	459
PspGI	CCWGG	1 cut(s)	459
PspN4I	GGNNCC	2 cut(s)	318, 623
PvuII	CAGCTG	1 cut(s)	243
RsaI	GTAC	1 cut(s)	99
RsaNI	GTAC	1 cut(s)	98
RseI	CAYNNNNRTG	2 cut(s)	276, 441
SaqAI	TTAA	2 cut(s)	237, 255
SatI	GCNGC	2 cut(s)	79, 542
Sau3AI	GATC	4 cut(s)	70, 386, 603, 634
ScrFI	CCNGG	1 cut(s)	461
SduI	GDGCHC	1 cut(s)	31
SetI	ASST	9 cut(s)	114, 245, 262, 312, 318, 353, 362, 475, 492
SmiMI	CAYNNNNRTG	2 cut(s)	276, 441
Sse9I	AATT	2 cut(s)	208, 515
SsiI	CCGC	2 cut(s)	541, 576
StyD4I	CCNGG	1 cut(s)	459
TaqI	TCGA	1 cut(s)	23
TaqII	GACCGA	1 cut(s)	6
TasI	AATT	2 cut(s)	208, 515
TauI	GCSGC	1 cut(s)	544
Tru1I	TTAA	2 cut(s)	237, 255
Tru9I	TTAA	2 cut(s)	237, 255
TscAI	CASTG	3 cut(s)	39, 183, 613
TseI	GCWGC	1 cut(s)	78
TspDTI	ATGAA	2 cut(s)	360, 441
TspRI	CASTG	3 cut(s)	39, 183, 613
XagI	CCTNNNNNAGG	1 cut(s)	355
XapI	RAATTY	1 cut(s)	515
XceI	RCATGY	1 cut(s)	444
XmnI	GAANNNNTTC	2 cut(s)	203, 218
Zsp2I	ATGCAT	1 cut(s)	442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.