pycom07g16990

Belongs to the hexokinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0002903
Physical Location & Seq
Reverse (-)
19524826 .. 19525391
566 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g16990.1

Sequence Viewer

Length: 255 bp
ATGTGGTTGTTTTATGCATTGGATCTCAAAGGAACAAACTTCCGTGTGCTGAGGGTCTCAATTCCTGAAAATCTTATGGTTGGGACTTCAGACGTATTCTTTGACTACATTGCGGCAGAACTTGCTAAGTTTGTTGCTAAAGAAGGTTTTACCTTCTCATTCCCTGTGCTACAATCATCAATTAATTCGGGGACCCTTATTAAGTGGACGAAAGGCTTTTCTATAGATGATGCAGTTCAGCCCTCATTGCTTTAG

Protein Analysis

85

Amino Acids

9.41

Weight (kDa)

5.09

Isoelectric Point (pI)

32.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hexokinase_1 PF00349 4 - 80 8.3e-23 Hexokinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 113
AclWI GGATC 1 cut(s) 30
AcuI CTGAAG 1 cut(s) 72
Alw26I GTCTC 1 cut(s) 61
AlwI GGATC 1 cut(s) 30
ArsI GACNNNNNNTTYG 2 cut(s) 83, 115
AseI ATTAAT 1 cut(s) 183
AspS9I GGNCC 1 cut(s) 192
AvaII GGWCC 1 cut(s) 192
BbvCI CCTCAGC 1 cut(s) 50
BcoDI GTCTC 1 cut(s) 61
BfmI CTRYAG 1 cut(s) 222
BisI GCNGC 1 cut(s) 114
BlsI GCNGC 1 cut(s) 115
Bme18I GGWCC 1 cut(s) 192
BmgT120I GGNCC 1 cut(s) 192
BmiI GGNNCC 2 cut(s) 193, 194
BmsI GCATC 1 cut(s) 220
Bpu10I CCTNAGC 1 cut(s) 50
BsaI GGTCTC 1 cut(s) 61
Bse3DI GCAATG 2 cut(s) 108, 245
BseMI GCAATG 2 cut(s) 108, 245
BseMII CTCAG 1 cut(s) 41
BslFI GGGAC 2 cut(s) 97, 205
BsmAI GTCTC 1 cut(s) 61
BsmFI GGGAC 2 cut(s) 97, 205
Bso31I GGTCTC 1 cut(s) 61
Bsp143I GATC 1 cut(s) 22
BspACI CCGC 1 cut(s) 113
BspCNI CTCAG 1 cut(s) 42
BspLI GGNNCC 2 cut(s) 193, 194
BspPI GGATC 1 cut(s) 30
BspTNI GGTCTC 1 cut(s) 61
BsrDI GCAATG 2 cut(s) 108, 245
BssMI GATC 1 cut(s) 22
BstAPI GCANNNNNTGC 1 cut(s) 122
BstDEI CTNAG 2 cut(s) 50, 126
BstKTI GATC 1 cut(s) 25
BstMAI GTCTC 1 cut(s) 61
BstMBI GATC 1 cut(s) 22
BstMWI GCNNNNNNNGC 2 cut(s) 122, 247
BstSFI CTRYAG 1 cut(s) 222
BstX2I RGATCY 1 cut(s) 22
BstYI RGATCY 1 cut(s) 22
Cfr13I GGNCC 1 cut(s) 192
CviJI RGCY 2 cut(s) 216, 241
CviKI_1 RGCY 2 cut(s) 216, 241
DdeI CTNAG 2 cut(s) 50, 126
DpnI GATC 1 cut(s) 24
DpnII GATC 1 cut(s) 22
Eco31I GGTCTC 1 cut(s) 61
Eco47I GGWCC 1 cut(s) 192
Eco57I CTGAAG 1 cut(s) 72
EcoO109I RGGNCCY 1 cut(s) 192
EcoT22I ATGCAT 1 cut(s) 19
FaiI YATR 3 cut(s) 15, 77, 224
FaqI GGGAC 2 cut(s) 97, 205
Fnu4HI GCNGC 1 cut(s) 114
Fsp4HI GCNGC 1 cut(s) 114
GluI GCNGC 1 cut(s) 114
Hpy166II GTNNAC 1 cut(s) 207
Hpy188I TCNGA 1 cut(s) 91
Hpy188III TCNNGA 1 cut(s) 65
Hpy8I GTNNAC 1 cut(s) 207
HpyAV CCTTC 2 cut(s) 137, 163
HpyCH4IV ACGT 1 cut(s) 93
HpyCH4V TGCA 2 cut(s) 17, 233
HpyF10VI GCNNNNNNNGC 2 cut(s) 122, 247
HpyF3I CTNAG 2 cut(s) 50, 126
HpySE526I ACGT 1 cut(s) 93
KflI GGGWCCC 1 cut(s) 192
Kzo9I GATC 1 cut(s) 22
LpnPI CCDG 2 cut(s) 78, 177
LweI GCATC 1 cut(s) 220
MaeII ACGT 1 cut(s) 93
MalI GATC 1 cut(s) 24
MboI GATC 1 cut(s) 22
MflI RGATCY 1 cut(s) 22
MluCI AATT 3 cut(s) 60, 180, 184
MnlI CCTC 2 cut(s) 45, 253
Mph1103I ATGCAT 1 cut(s) 19
MseI TTAA 2 cut(s) 183, 201
MwoI GCNNNNNNNGC 2 cut(s) 122, 247
NdeII GATC 1 cut(s) 22
NlaIV GGNNCC 2 cut(s) 193, 194
NsiI ATGCAT 1 cut(s) 19
PkrI GCNGC 1 cut(s) 115
PpuMI RGGWCCY 1 cut(s) 192
PshBI ATTAAT 1 cut(s) 183
Psp5II RGGWCCY 1 cut(s) 192
PspN4I GGNNCC 2 cut(s) 193, 194
PspPI GGNCC 1 cut(s) 192
PspPPI RGGWCCY 1 cut(s) 192
PsuI RGATCY 1 cut(s) 22
SaqAI TTAA 2 cut(s) 183, 201
SatI GCNGC 1 cut(s) 114
Sau3AI GATC 1 cut(s) 22
Sau96I GGNCC 1 cut(s) 192
SetI ASST 3 cut(s) 96, 148, 155
SfaNI GCATC 1 cut(s) 220
SfcI CTRYAG 1 cut(s) 222
SgeI CNNG 5 cut(s) 56, 77, 134, 176, 201
SinI GGWCC 1 cut(s) 192
Sse9I AATT 3 cut(s) 60, 180, 184
SsiI CCGC 1 cut(s) 113
TaiI ACGT 1 cut(s) 96
TasI AATT 3 cut(s) 60, 180, 184
TauI GCSGC 1 cut(s) 116
Tru1I TTAA 2 cut(s) 183, 201
Tru9I TTAA 2 cut(s) 183, 201
TspGWI ACGGA 1 cut(s) 32
VpaK11BI GGWCC 1 cut(s) 192
VspI ATTAAT 1 cut(s) 183
Zsp2I ATGCAT 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.