Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0002903

Physical Location & Seq

Genomic Coordinates Forward (+)

10114375 .. 10116977

Gene Structure 2603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g11910.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGTTGGGACTTCAGACGCACTCTTTGACTACATTGCGGCAGAACTTGCTAAGTTTGTTGCTAAAGAAGGTCAAGATCATCAACCCCCTCCTGGCAGGCAGAGGGAACTAGGCTTTACCTTCTCATTCCCTGTGCTGCAATCATCAATTAATTCGGGGACCCTTATTAAGTGGACGAAAGGCTTTTCTATAGATGATGCAGTTGGCCAAGATGTAGTGGCTGCACTCAGTAAAGCCATTGAAAGAACAGGCCTTGATATGTGTGTGTCTGCTCTGGTCAATGACACGATTGGGACATTAGCTGGAGGTAGGTATGTCAATCAGGATGTTATTGCTGCTGTGATTTTAGGTACAGGGACAAATGCAGCATATGTGGAACGTGCACAAGCAATACCAAAATGGCATGGTCTGCTACCTAAATCAGGAGAGATGGTTATCAACATGGAATGGGGTAACTTTAAGTCAGCTCACCTTCCATTGACAGAATATGATCACTCATTGGATACTGAAAGTTTGAACCCTGGTGATCAGATTTTTGAGAAGATAATTTCTGGAATGTACTTGGGAGAAATTGTTCGCAGAGTTCTTTGTAGGATTGCTGAAGAAGCTTCCCTTTTTGGTGACACTATTCCACCAAAGTTAAAAGTTCCTTTCAATTTGAGGACACCTGACATGTCTGCGATGCATCAGGATGCATCCTCTGATCTTAGGGTGGTACGAGAAAAATTGAAGAATGTATTGGAGATAGCAAATACTTCTCTTAAAGTAAGAAAAGTTATTGTTGAGCTCTGCAATATAGTTGCTACACGTGGGGCACGCCTTGCTGCTGCTGGAGTCTTGGGTGTACTGAAAAAGCTGGGAAGAGACGCGGTCAAGGATGGGGAAAACAAGAAGACAGTGGTAGCTTTGGATGGTGGATTGTACGAGCATTACACTGAATATAGCAAGTGCATGGAGAATACTCTACGAGAATTGCTTGGAGAGGAAGTTGCTGAAACTATTGTTATTGAGCACTCTAATGATGGGTCTGGGATTGGAGCTGCCCTTCTCGCTGCCTCTCACTCACAATACCCTGGAATTGATGAATCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko00051 ko00052 ko00500 ko00520 ko00521 ko00524 ko01100 ko01110 ko01120 ko01130 ko01200 ko04066 ko04910 ko04930 ko04973 ko05230 map00010 map00051 map00052 map00500 map00520 map00521 map00524 map01100 map01110 map01120 map01130 map01200 map04066 map04910 map04930 map04973 map05230

Pfam Domains

Protein Families

Hexokinase_1 Hexokinase_2

Protein Analysis

364

Amino Acids

39.27

Weight (kDa)

5.39

Isoelectric Point (pI)

28.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002903)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37840
fragaria_vesca	FvH4_1g18730 FvH4_6g32470 FvH4_6g32470 FvH4_6g32470 FvH4_6g32470
malus_domestica	MD02G1194700.v1.1 MD09G1202200.v1.1 MD15G1305100.v1.1 MD17G1183100.v1.1
prunus_persica	Prupe.3G057800_v2.0.a1 Prupe.6G212100_v2.0.a1
pyrus_communis	pycom07g16990 pycom09g11900 pycom09g11910 pycom15g26750 pycom17g19210
rosa_chinensis	RchiOBHm_Chr2g0109591 RchiOBHm_Chr2g0140711
rosa_laevigata	RLG00000017748 RLG00000019894
rosa_multiflora	Rmu_sc0000332.1_g000047 Rmu_sc0003342.1_g000014
rosa_roxburghii	Rroxscaffold_2G00134120
rosa_rugosa	Rorug02G0160900 Rorug02G0161000 Rorug02G0364300 Rorug02G0364400 Rorug02G0364500
rosa_samantha	Rh2AG213300 Rh2AG416000 Rh2BG223500 Rh2BG425600 Rh2CG215300 Rh2CG402200 Rh2DG218800 Rh2DG435500
rosa_wichuraiana	Rw2G034040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	869
AciI	CCGC	2 cut(s)	38, 869
AcoI	YGGCCR	1 cut(s)	205
AcuI	CTGAAG	1 cut(s)	621
AcvI	CACGTG	1 cut(s)	809
AfaI	GTAC	5 cut(s)	352, 560, 717, 846, 923
AfiI	CCNNNNNNNGG	2 cut(s)	92, 422
AflIII	ACRYGT	2 cut(s)	672, 806
AgsI	TTSAA	4 cut(s)	242, 517, 655, 730
AjnI	CCWGG	3 cut(s)	91, 520, 1072
AjuI	GAANNNNNNNTTGG	2 cut(s)	722, 754
AloI	GAACNNNNNNTCC	2 cut(s)	558, 590
AluBI	AGCT	7 cut(s)	302, 467, 608, 787, 856, 905, 1040
AluI	AGCT	7 cut(s)	302, 467, 608, 787, 856, 905, 1040
Alw21I	GWGCWC	3 cut(s)	385, 789, 1014
Alw26I	GTCTC	1 cut(s)	858
Alw44I	GTGCAC	1 cut(s)	381
AoxI	GGCC	2 cut(s)	205, 250
ApaLI	GTGCAC	1 cut(s)	381
ApeKI	GCWGC	8 cut(s)	136, 221, 335, 365, 824, 827, 1040, 1052
ArsI	GACNNNNNNTTYG	2 cut(s)	8, 40
AseI	ATTAAT	1 cut(s)	150
Asp700I	GAANNNNTTC	1 cut(s)	573
AspS9I	GGNCC	1 cut(s)	159
AsuHPI	GGTGA	3 cut(s)	461, 536, 632
AvaII	GGWCC	1 cut(s)	159
BaeGI	GKGCMC	2 cut(s)	385, 817
BalI	TGGCCA	1 cut(s)	207
BanII	GRGCYC	1 cut(s)	789
BbrPI	CACGTG	1 cut(s)	809
BbsI	GAAGAC	1 cut(s)	899
Bbv12I	GWGCWC	3 cut(s)	385, 789, 1014
BbvI	GCAGC	8 cut(s)	123, 208, 322, 377, 811, 814, 1027, 1039
BccI	CCATC	4 cut(s)	424, 872, 905, 1016
BciT130I	CCWGG	3 cut(s)	93, 522, 1074
BciVI	GTATCC	1 cut(s)	496
BclI	TGATCA	2 cut(s)	490, 526
BcoDI	GTCTC	1 cut(s)	858
BfaI	CTAG	1 cut(s)	110
BfmI	CTRYAG	1 cut(s)	189
BfuI	GTATCC	1 cut(s)	496
BisI	GCNGC	9 cut(s)	39, 137, 222, 336, 366, 825, 828, 1041, 1053
BlsI	GCNGC	9 cut(s)	40, 138, 223, 337, 367, 826, 829, 1042, 1054
Bme1390I	CCNGG	3 cut(s)	93, 522, 1074
Bme18I	GGWCC	1 cut(s)	159
BmgT120I	GGNCC	1 cut(s)	159
BmiI	GGNNCC	2 cut(s)	160, 161
BmrFI	CCNGG	3 cut(s)	93, 522, 1074
BmsI	GCATC	5 cut(s)	187, 672, 682, 694, 704
BpiI	GAAGAC	1 cut(s)	899
BpmI	CTGGAG	2 cut(s)	324, 852
BsaAI	YACGTR	1 cut(s)	809
BsaBI	GATNNNNATC	1 cut(s)	434
BsaJI	CCNNGG	2 cut(s)	520, 1072
BsaXI	ACNNNNNCTCC	6 cut(s)	417, 447, 558, 588, 972, 1002
Bsc4I	CCNNNNNNNGG	2 cut(s)	92, 422
Bse3DI	GCAATG	1 cut(s)	33
Bse8I	GATNNNNATC	1 cut(s)	434
BseBI	CCWGG	3 cut(s)	93, 522, 1074
BseDI	CCNNGG	2 cut(s)	520, 1072
BseGI	GGATG	5 cut(s)	331, 695, 697, 883, 916
BseJI	GATNNNNATC	1 cut(s)	434
BseLI	CCNNNNNNNGG	2 cut(s)	92, 422
BseMI	GCAATG	1 cut(s)	33
BseMII	CTCAG	1 cut(s)	241
BseSI	GKGCMC	2 cut(s)	385, 817
BseXI	GCAGC	8 cut(s)	123, 208, 322, 377, 811, 814, 1027, 1039
BseYI	CCCAGC	1 cut(s)	856
BsgI	GTGCAG	1 cut(s)	207
Bsh1236I	CGCG	1 cut(s)	869
BshFI	GGCC	2 cut(s)	207, 252
BsiHKAI	GWGCWC	3 cut(s)	385, 789, 1014
BslFI	GGGAC	4 cut(s)	22, 172, 307, 370
BslI	CCNNNNNNNGG	2 cut(s)	92, 422
BsmAI	GTCTC	1 cut(s)	858
BsmBI	CGTCTC	1 cut(s)	858
BsmFI	GGGAC	4 cut(s)	22, 172, 307, 370
BsnI	GGCC	2 cut(s)	207, 252
Bsp1286I	GDGCHC	4 cut(s)	385, 789, 817, 1014
Bsp143I	GATC	4 cut(s)	76, 490, 526, 703
BspACI	CCGC	2 cut(s)	38, 869
BspANI	GGCC	2 cut(s)	207, 252
BspCNI	CTCAG	1 cut(s)	240
BspFNI	CGCG	1 cut(s)	869
BspLI	GGNNCC	2 cut(s)	160, 161
BsrDI	GCAATG	1 cut(s)	33
BssECI	CCNNGG	2 cut(s)	520, 1072
BssMI	GATC	4 cut(s)	76, 490, 526, 703
Bst2UI	CCWGG	3 cut(s)	93, 522, 1074
Bst4CI	ACNGT	1 cut(s)	898
Bst6I	CTCTTC	1 cut(s)	856
BstAPI	GCANNNNNTGC	3 cut(s)	47, 409, 821
BstBAI	YACGTR	1 cut(s)	809
BstC8I	GCNNGC	2 cut(s)	98, 817
BstDEI	CTNAG	3 cut(s)	51, 227, 707
BstENI	CCTNNNNNAGG	1 cut(s)	420
BstF5I	GGATG	5 cut(s)	331, 695, 697, 883, 916
BstFNI	CGCG	1 cut(s)	869
BstKTI	GATC	4 cut(s)	79, 493, 529, 706
BstMAI	GTCTC	1 cut(s)	858
BstMBI	GATC	4 cut(s)	76, 490, 526, 703
BstMWI	GCNNNNNNNGC	5 cut(s)	47, 409, 605, 821, 1049
BstNI	CCWGG	3 cut(s)	93, 522, 1074
BstNSI	RCATGY	1 cut(s)	676
BstSCI	CCNGG	3 cut(s)	91, 520, 1072
BstSFI	CTRYAG	1 cut(s)	189
BstSLI	GKGCMC	2 cut(s)	385, 817
BstUI	CGCG	1 cut(s)	869
BstV1I	GCAGC	8 cut(s)	123, 208, 322, 377, 811, 814, 1027, 1039
BstV2I	GAAGAC	1 cut(s)	899
BsuI	GTATCC	1 cut(s)	496
BsuRI	GGCC	2 cut(s)	207, 252
BtgZI	GCGATG	1 cut(s)	695
BtsCI	GGATG	5 cut(s)	331, 695, 697, 883, 916
BtsIMutI	CAGTG	2 cut(s)	903, 933
Cac8I	GCNNGC	2 cut(s)	98, 817
Cfr13I	GGNCC	1 cut(s)	159
CseI	GACGC	2 cut(s)	26, 875
Csp6I	GTAC	5 cut(s)	351, 559, 716, 845, 922
CviAII	CATG	4 cut(s)	404, 442, 673, 952
CviQI	GTAC	5 cut(s)	351, 559, 716, 845, 922
DdeI	CTNAG	3 cut(s)	51, 227, 707
DpnI	GATC	4 cut(s)	78, 492, 528, 705
DpnII	GATC	4 cut(s)	76, 490, 526, 703
EaeI	YGGCCR	1 cut(s)	205
Eam1104I	CTCTTC	1 cut(s)	856
EarI	CTCTTC	1 cut(s)	856
Ecl136II	GAGCTC	1 cut(s)	787
Eco147I	AGGCCT	1 cut(s)	252
Eco24I	GRGCYC	1 cut(s)	789
Eco47I	GGWCC	1 cut(s)	159
Eco53kI	GAGCTC	1 cut(s)	787
Eco57I	CTGAAG	1 cut(s)	621
Eco72I	CACGTG	1 cut(s)	809
EcoICRI	GAGCTC	1 cut(s)	787
EcoNI	CCTNNNNNAGG	1 cut(s)	420
EcoO109I	RGGNCCY	1 cut(s)	159
EcoRII	CCWGG	3 cut(s)	91, 520, 1072
EcoT22I	ATGCAT	2 cut(s)	687, 697
EcoT38I	GRGCYC	1 cut(s)	789
Esp3I	CGTCTC	1 cut(s)	858
FaeI	CATG	4 cut(s)	407, 445, 676, 955
FalI	AAGNNNNNCTT	2 cut(s)	597, 629
FaqI	GGGAC	4 cut(s)	22, 172, 307, 370
FatI	CATG	4 cut(s)	403, 441, 672, 951
FauNDI	CATATG	1 cut(s)	370
FbaI	TGATCA	2 cut(s)	490, 526
Fnu4HI	GCNGC	9 cut(s)	39, 137, 222, 336, 366, 825, 828, 1041, 1053
FokI	GGATG	5 cut(s)	338, 682, 704, 890, 923
FriOI	GRGCYC	1 cut(s)	789
Fsp4HI	GCNGC	9 cut(s)	39, 137, 222, 336, 366, 825, 828, 1041, 1053
FspBI	CTAG	1 cut(s)	110
GluI	GCNGC	9 cut(s)	39, 137, 222, 336, 366, 825, 828, 1041, 1053
GsaI	CCCAGC	1 cut(s)	860
GsuI	CTGGAG	2 cut(s)	324, 852
HaeIII	GGCC	2 cut(s)	207, 252
HgaI	GACGC	2 cut(s)	26, 875
Hin1II	CATG	4 cut(s)	407, 445, 676, 955
HindIII	AAGCTT	1 cut(s)	606
HinfI	GANTC	2 cut(s)	834, 1085
HphI	GGTGA	3 cut(s)	461, 536, 632
Hpy166II	GTNNAC	3 cut(s)	174, 383, 845
Hpy188I	TCNGA	3 cut(s)	16, 531, 703
Hpy188III	TCNNGA	6 cut(s)	74, 323, 423, 552, 689, 1089
Hpy8I	GTNNAC	3 cut(s)	174, 383, 845
HpyAV	CCTTC	4 cut(s)	62, 130, 482, 1055
HpyCH4III	ACNGT	1 cut(s)	898
HpyCH4IV	ACGT	2 cut(s)	379, 808
HpyCH4V	TGCA	9 cut(s)	139, 200, 224, 365, 383, 685, 695, 792, 951
HpyF10VI	GCNNNNNNNGC	5 cut(s)	47, 409, 605, 821, 1049
HpyF3I	CTNAG	3 cut(s)	51, 227, 707
HpySE526I	ACGT	2 cut(s)	379, 808
Hsp92II	CATG	4 cut(s)	407, 445, 676, 955
KflI	GGGWCCC	1 cut(s)	159
Ksp22I	TGATCA	2 cut(s)	490, 526
Kzo9I	GATC	4 cut(s)	76, 490, 526, 703
LmnI	GCTCC	1 cut(s)	1037
Lsp1109I	GCAGC	8 cut(s)	123, 208, 322, 377, 811, 814, 1027, 1039
LweI	GCATC	5 cut(s)	187, 672, 682, 694, 704
MaeI	CTAG	1 cut(s)	110
MaeII	ACGT	2 cut(s)	379, 808
MaeIII	GTNAC	2 cut(s)	452, 620
MalI	GATC	4 cut(s)	78, 492, 528, 705
MboI	GATC	4 cut(s)	76, 490, 526, 703
MboII	GAAGA	5 cut(s)	553, 614, 742, 873, 904
MhlI	GDGCHC	4 cut(s)	385, 789, 817, 1014
MlsI	TGGCCA	1 cut(s)	207
MluCI	AATT	8 cut(s)	147, 151, 546, 570, 655, 725, 971, 1077
MluNI	TGGCCA	1 cut(s)	207
MlyI	GAGTC	1 cut(s)	843
MnlI	CCTC	7 cut(s)	96, 99, 299, 654, 709, 976, 1066
Mox20I	TGGCCA	1 cut(s)	207
Mph1103I	ATGCAT	2 cut(s)	687, 697
MroXI	GAANNNNTTC	1 cut(s)	573
MscI	TGGCCA	1 cut(s)	207
MseI	TTAA	5 cut(s)	150, 168, 459, 641, 762
MslI	CAYNNNNRTG	2 cut(s)	690, 1017
Msp20I	TGGCCA	1 cut(s)	207
MspR9I	CCNGG	3 cut(s)	93, 522, 1074
MvaI	CCWGG	3 cut(s)	93, 522, 1074
MvnI	CGCG	1 cut(s)	869
MwoI	GCNNNNNNNGC	5 cut(s)	47, 409, 605, 821, 1049
NdeI	CATATG	1 cut(s)	370
NdeII	GATC	4 cut(s)	76, 490, 526, 703
NlaIII	CATG	4 cut(s)	407, 445, 676, 955
NlaIV	GGNNCC	2 cut(s)	160, 161
NmuCI	GTSAC	1 cut(s)	620
NsiI	ATGCAT	2 cut(s)	687, 697
NspI	RCATGY	1 cut(s)	676
PceI	AGGCCT	1 cut(s)	252
PciI	ACATGT	1 cut(s)	672
PdmI	GAANNNNTTC	1 cut(s)	573
PfeI	GAWTC	1 cut(s)	1085
PflFI	GACNNNGTC	1 cut(s)	869
PkrI	GCNGC	9 cut(s)	40, 138, 223, 337, 367, 826, 829, 1042, 1054
PleI	GAGTC	1 cut(s)	842
PmaCI	CACGTG	1 cut(s)	809
PmlI	CACGTG	1 cut(s)	809
PpsI	GAGTC	1 cut(s)	842
Ppu21I	YACGTR	1 cut(s)	809
PpuMI	RGGWCCY	1 cut(s)	159
PscI	ACATGT	1 cut(s)	672
PshBI	ATTAAT	1 cut(s)	150
Psp124BI	GAGCTC	1 cut(s)	789
Psp5II	RGGWCCY	1 cut(s)	159
Psp6I	CCWGG	3 cut(s)	91, 520, 1072
PspCI	CACGTG	1 cut(s)	809
PspFI	CCCAGC	1 cut(s)	856
PspGI	CCWGG	3 cut(s)	91, 520, 1072
PspN4I	GGNNCC	2 cut(s)	160, 161
PspPI	GGNCC	1 cut(s)	159
PspPPI	RGGWCCY	1 cut(s)	159
PsyI	GACNNNGTC	1 cut(s)	869
RsaI	GTAC	5 cut(s)	352, 560, 717, 846, 923
RsaNI	GTAC	5 cut(s)	351, 559, 716, 845, 922
RseI	CAYNNNNRTG	2 cut(s)	690, 1017
SacI	GAGCTC	1 cut(s)	789
SaqAI	TTAA	5 cut(s)	150, 168, 459, 641, 762
SatI	GCNGC	9 cut(s)	39, 137, 222, 336, 366, 825, 828, 1041, 1053
Sau3AI	GATC	4 cut(s)	76, 490, 526, 703
Sau96I	GGNCC	1 cut(s)	159
SchI	GAGTC	1 cut(s)	843
ScrFI	CCNGG	3 cut(s)	93, 522, 1074
SduI	GDGCHC	4 cut(s)	385, 789, 817, 1014
SfaNI	GCATC	5 cut(s)	187, 672, 682, 694, 704
SfcI	CTRYAG	1 cut(s)	189
SinI	GGWCC	1 cut(s)	159
SmiMI	CAYNNNNRTG	2 cut(s)	690, 1017
Sse9I	AATT	8 cut(s)	147, 151, 546, 570, 655, 725, 971, 1077
SseBI	AGGCCT	1 cut(s)	252
SsiI	CCGC	2 cut(s)	38, 869
SspMI	CTAG	1 cut(s)	110
SstI	GAGCTC	1 cut(s)	789
StuI	AGGCCT	1 cut(s)	252
StyD4I	CCNGG	3 cut(s)	91, 520, 1072
TaaI	ACNGT	1 cut(s)	898
TaiI	ACGT	2 cut(s)	382, 811
TasI	AATT	8 cut(s)	147, 151, 546, 570, 655, 725, 971, 1077
TatI	WGTACW	2 cut(s)	558, 844
TauI	GCSGC	1 cut(s)	41
TfiI	GAWTC	1 cut(s)	1085
Tru1I	TTAA	5 cut(s)	150, 168, 459, 641, 762
Tru9I	TTAA	5 cut(s)	150, 168, 459, 641, 762
TscAI	CASTG	2 cut(s)	903, 940
TseFI	GTSAC	1 cut(s)	620
TseI	GCWGC	8 cut(s)	136, 221, 335, 365, 824, 827, 1040, 1052
Tsp45I	GTSAC	1 cut(s)	620
TspRI	CASTG	2 cut(s)	903, 940
Tth111I	GACNNNGTC	1 cut(s)	869
VneI	GTGCAC	1 cut(s)	381
VpaK11BI	GGWCC	1 cut(s)	159
VspI	ATTAAT	1 cut(s)	150
XagI	CCTNNNNNAGG	1 cut(s)	420
XceI	RCATGY	1 cut(s)	676
XmnI	GAANNNNTTC	1 cut(s)	573
XspI	CTAG	1 cut(s)	110
Zsp2I	ATGCAT	2 cut(s)	687, 697

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.