Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002903

Physical Location & Seq

Genomic Coordinates Forward (+)

46232430 .. 46237060

Gene Structure 4631 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0364500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGATGGCTGCGGCGCCACCCACCGAAGACGTCAACGATTGGGTCAAACTCGCCATGAAAGACGACGTGGCGGTCGTCGGCGTTCTACTCGACATCAGACACGCCGAGCCGCCGCCGCCGCCGCCACCGTCGATGTTCAAGTCTCCAGCTTTGAAGCTCGAGTGGAGCGTGCGGCAGAGGCGGTCCAAGCACGTGCCGCGCCACCCAAGCGACGTCGTTGTTGACGTCAAAAAGAAGAAGAAGAAGGCGGCGGAGGAGTCGACCAGAGCCAGCCCCACAACGCCGCTCTCCTGGAGCGGCGCCACTTCGGTCAGCGGCGGCGGTGCCTCCGAAGAGTCCAGCAAGCTGCCTGAGCCGACCGACGCCGCGAGATCTAAGGTTGCTGTTACAAGTTGCACGACCATCTCCAAGAGGCCGAGAAAGAGGAAGACATTAGCTCAACTTAAAGAGGAGGAGAGTCTTCTATTGAAGGAAAGACGCAATTTGAAAAAGGAACTGCTAAACCTACGCCTCAATGTCGAGAAGCAGAGGGCCACAAATGAAAGCTTGAAAAGAATAAAGCTGCAGCAAACAATGATGAAAGTTGCATCTTCTTCTGCATCGGGTGAAGCCATTTCGTATCAACCTGCACAAGTAAATGCAGTTAGTGAACTTACTAGAATCATTGATCTTGGCAATTCACAGAGTTCCTGTCCATCCAACATTTCTTACATGGTACACGAAGTTGGGAACTGCCACGAAGCTGCCTTTCCACTACCGGATCTAAATCTTCCATTTCAAGATGATCACAACTCCGAGGCTTTATGTGGAATGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko00051 ko00052 ko00500 ko00520 ko00521 ko00524 ko01100 ko01110 ko01120 ko01130 ko01200 ko04066 ko04910 ko04930 ko04973 ko05230 map00010 map00051 map00052 map00500 map00520 map00521 map00524 map01100 map01110 map01120 map01130 map01200 map04066 map04910 map04930 map04973 map05230

Pfam Domains

Protein Families

Hexokinase_1 Hexokinase_2

Protein Analysis

272

Amino Acids

29.81

Weight (kDa)

9.3

Isoelectric Point (pI)

66.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002903)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37840
fragaria_vesca	FvH4_1g18730 FvH4_6g32470 FvH4_6g32470 FvH4_6g32470 FvH4_6g32470
malus_domestica	MD02G1194700.v1.1 MD09G1202200.v1.1 MD15G1305100.v1.1 MD17G1183100.v1.1
prunus_persica	Prupe.3G057800_v2.0.a1 Prupe.6G212100_v2.0.a1
pyrus_communis	pycom07g16990 pycom09g11900 pycom09g11910 pycom15g26750 pycom17g19210
rosa_chinensis	RchiOBHm_Chr2g0109591 RchiOBHm_Chr2g0140711
rosa_laevigata	RLG00000017748 RLG00000019894
rosa_multiflora	Rmu_sc0000332.1_g000047 Rmu_sc0003342.1_g000014
rosa_roxburghii	Rroxscaffold_2G00134120
rosa_rugosa	Rorug02G0160900 Rorug02G0161000 Rorug02G0364300 Rorug02G0364400 Rorug02G0364500
rosa_samantha	Rh2AG213300 Rh2AG416000 Rh2BG223500 Rh2BG425600 Rh2CG215300 Rh2CG402200 Rh2DG218800 Rh2DG435500
rosa_wichuraiana	Rw2G034040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	71
AatII	GACGTC	3 cut(s)	33, 216, 228
Acc36I	ACCTGC	1 cut(s)	634
AccB1I	GGYRCC	3 cut(s)	13, 299, 323
AccBSI	CCGCTC	2 cut(s)	286, 297
AccI	GTMKAC	1 cut(s)	260
AccII	CGCG	2 cut(s)	199, 368
AclWI	GGATC	1 cut(s)	768
AcvI	CACGTG	1 cut(s)	193
AcyI	GRCGYC	6 cut(s)	14, 30, 213, 225, 300, 363
AfaI	GTAC	1 cut(s)	717
AgsI	TTSAA	6 cut(s)	139, 154, 469, 487, 550, 779
AjiI	CACGTC	1 cut(s)	67
AjnI	CCWGG	1 cut(s)	290
AluBI	AGCT	8 cut(s)	149, 157, 346, 437, 546, 562, 743, 816
AluI	AGCT	8 cut(s)	149, 157, 346, 437, 546, 562, 743, 816
Alw26I	GTCTC	1 cut(s)	147
AlwI	GGATC	1 cut(s)	768
Ama87I	CYCGRG	1 cut(s)	158
AoxI	GGCC	2 cut(s)	413, 531
ApeKI	GCWGC	5 cut(s)	8, 346, 562, 565, 743
AspLEI	GCGC	3 cut(s)	16, 201, 302
AspS9I	GGNCC	2 cut(s)	183, 531
AsuHPI	GGTGA	1 cut(s)	617
AvaI	CYCGRG	1 cut(s)	158
AvaII	GGWCC	1 cut(s)	183
BanI	GGYRCC	3 cut(s)	13, 299, 323
BbrPI	CACGTG	1 cut(s)	193
BbsI	GAAGAC	3 cut(s)	33, 434, 452
BbvI	GCAGC	4 cut(s)	333, 549, 577, 730
BccI	CCATC	2 cut(s)	410, 703
BciT130I	CCWGG	1 cut(s)	292
BclI	TGATCA	1 cut(s)	784
BcoDI	GTCTC	1 cut(s)	147
BfaI	CTAG	1 cut(s)	657
BfmI	CTRYAG	1 cut(s)	563
BfoI	RGCGCY	2 cut(s)	17, 303
BfuAI	ACCTGC	1 cut(s)	634
BglII	AGATCT	1 cut(s)	371
Bme1390I	CCNGG	1 cut(s)	292
Bme18I	GGWCC	1 cut(s)	183
BmeT110I	CYCGRG	1 cut(s)	158
BmgBI	CACGTC	1 cut(s)	67
BmgT120I	GGNCC	2 cut(s)	183, 531
BmiI	GGNNCC	3 cut(s)	15, 301, 325
BmrFI	CCNGG	1 cut(s)	292
BmsI	GCATC	2 cut(s)	596, 608
BpiI	GAAGAC	3 cut(s)	33, 434, 452
BpmI	CTGGAG	2 cut(s)	129, 313
Bpu10I	CCTNAGC	1 cut(s)	351
BsaAI	YACGTR	1 cut(s)	193
BsaBI	GATNNNNATC	1 cut(s)	765
BsaHI	GRCGYC	6 cut(s)	14, 30, 213, 225, 300, 363
BsaJI	CCNNGG	1 cut(s)	795
BsaWI	WCCGGW	1 cut(s)	757
Bse8I	GATNNNNATC	1 cut(s)	765
BseBI	CCWGG	1 cut(s)	292
BseDI	CCNNGG	1 cut(s)	795
BseGI	GGATG	1 cut(s)	695
BseJI	GATNNNNATC	1 cut(s)	765
BseMII	CTCAG	1 cut(s)	342
BseRI	GAGGAG	3 cut(s)	269, 464, 467
BseXI	GCAGC	4 cut(s)	333, 549, 577, 730
BsgI	GTGCAG	1 cut(s)	612
Bsh1236I	CGCG	2 cut(s)	199, 368
Bsh1285I	CGRYCG	2 cut(s)	75, 360
BshFI	GGCC	2 cut(s)	415, 533
BshNI	GGYRCC	3 cut(s)	13, 299, 323
BsiEI	CGRYCG	2 cut(s)	75, 360
BsiHKCI	CYCGRG	1 cut(s)	158
BsiSI	CCGG	1 cut(s)	758
BsmAI	GTCTC	1 cut(s)	147
BsnI	GGCC	2 cut(s)	415, 533
BsoBI	CYCGRG	1 cut(s)	158
Bsp143I	GATC	4 cut(s)	371, 667, 760, 784
BspANI	GGCC	2 cut(s)	415, 533
BspCNI	CTCAG	1 cut(s)	343
BspFNI	CGCG	2 cut(s)	199, 368
BspLI	GGNNCC	3 cut(s)	15, 301, 325
BspMAI	CTGCAG	1 cut(s)	567
BspMI	ACCTGC	1 cut(s)	634
BspPI	GGATC	1 cut(s)	768
BspT107I	GGYRCC	3 cut(s)	13, 299, 323
BsrBI	CCGCTC	2 cut(s)	286, 297
BssECI	CCNNGG	1 cut(s)	795
BssMI	GATC	4 cut(s)	371, 667, 760, 784
BssNI	GRCGYC	6 cut(s)	14, 30, 213, 225, 300, 363
Bst2UI	CCWGG	1 cut(s)	292
Bst4CI	ACNGT	1 cut(s)	129
Bst6I	CTCTTC	1 cut(s)	327
BstACI	GRCGYC	6 cut(s)	14, 30, 213, 225, 300, 363
BstBAI	YACGTR	1 cut(s)	193
BstC8I	GCNNGC	3 cut(s)	170, 271, 344
BstDEI	CTNAG	2 cut(s)	351, 375
BstF5I	GGATG	1 cut(s)	695
BstFNI	CGCG	2 cut(s)	199, 368
BstH2I	RGCGCY	2 cut(s)	17, 303
BstHHI	GCGC	3 cut(s)	16, 201, 302
BstKTI	GATC	4 cut(s)	374, 670, 763, 787
BstMAI	GTCTC	1 cut(s)	147
BstMBI	GATC	4 cut(s)	371, 667, 760, 784
BstMCI	CGRYCG	2 cut(s)	75, 360
BstMWI	GCNNNNNNNGC	8 cut(s)	115, 118, 121, 178, 187, 196, 207, 352
BstNI	CCWGG	1 cut(s)	292
BstSCI	CCNGG	1 cut(s)	290
BstSFI	CTRYAG	1 cut(s)	563
BstUI	CGCG	2 cut(s)	199, 368
BstV1I	GCAGC	4 cut(s)	333, 549, 577, 730
BstV2I	GAAGAC	3 cut(s)	33, 434, 452
BstX2I	RGATCY	2 cut(s)	371, 760
BstYI	RGATCY	2 cut(s)	371, 760
BsuRI	GGCC	2 cut(s)	415, 533
BtrI	CACGTC	1 cut(s)	67
BtsCI	GGATG	1 cut(s)	695
BveI	ACCTGC	1 cut(s)	634
Cac8I	GCNNGC	3 cut(s)	170, 271, 344
CfoI	GCGC	3 cut(s)	16, 201, 302
Cfr13I	GGNCC	2 cut(s)	183, 531
CseI	GACGC	2 cut(s)	371, 486
Csp6I	GTAC	1 cut(s)	716
CviAII	CATG	2 cut(s)	55, 712
CviQI	GTAC	1 cut(s)	716
DdeI	CTNAG	2 cut(s)	351, 375
DinI	GGCGCC	2 cut(s)	15, 301
DpnI	GATC	4 cut(s)	373, 669, 762, 786
DpnII	GATC	4 cut(s)	371, 667, 760, 784
DrdI	GACNNNNNNGTC	1 cut(s)	71
DseDI	GACNNNNNNGTC	1 cut(s)	71
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
EciI	GGCGGA	1 cut(s)	266
Eco47I	GGWCC	1 cut(s)	183
Eco72I	CACGTG	1 cut(s)	193
Eco88I	CYCGRG	1 cut(s)	158
EcoRII	CCWGG	1 cut(s)	290
EgeI	GGCGCC	2 cut(s)	15, 301
EheI	GGCGCC	2 cut(s)	15, 301
FaeI	CATG	2 cut(s)	58, 715
FaiI	YATR	3 cut(s)	56, 713, 805
FatI	CATG	2 cut(s)	54, 711
FbaI	TGATCA	1 cut(s)	784
FblI	GTMKAC	1 cut(s)	260
FokI	GGATG	1 cut(s)	682
FspBI	CTAG	1 cut(s)	657
GlaI	GCGC	3 cut(s)	15, 200, 301
GsuI	CTGGAG	2 cut(s)	129, 313
HaeII	RGCGCY	2 cut(s)	17, 303
HaeIII	GGCC	2 cut(s)	415, 533
HapII	CCGG	1 cut(s)	758
HgaI	GACGC	2 cut(s)	371, 486
HhaI	GCGC	3 cut(s)	16, 201, 302
Hin1I	GRCGYC	6 cut(s)	14, 30, 213, 225, 300, 363
Hin1II	CATG	2 cut(s)	58, 715
Hin6I	GCGC	3 cut(s)	14, 199, 300
HinP1I	GCGC	3 cut(s)	14, 199, 300
HincII	GTYRAC	3 cut(s)	34, 223, 261
HindII	GTYRAC	3 cut(s)	34, 223, 261
HindIII	AAGCTT	1 cut(s)	544
HinfI	GANTC	4 cut(s)	257, 335, 457, 660
HpaII	CCGG	1 cut(s)	758
HphI	GGTGA	1 cut(s)	617
Hpy166II	GTNNAC	5 cut(s)	34, 223, 261, 650, 718
Hpy188I	TCNGA	3 cut(s)	98, 331, 796
Hpy188III	TCNNGA	2 cut(s)	520, 779
Hpy8I	GTNNAC	5 cut(s)	34, 223, 261, 650, 718
Hpy99I	CGWCG	6 cut(s)	68, 80, 133, 215, 218, 365
HpyAV	CCTTC	2 cut(s)	238, 463
HpyCH4III	ACNGT	1 cut(s)	129
HpyCH4IV	ACGT	5 cut(s)	30, 66, 192, 213, 225
HpyCH4V	TGCA	6 cut(s)	396, 565, 587, 599, 629, 641
HpyF10VI	GCNNNNNNNGC	8 cut(s)	115, 118, 121, 178, 187, 196, 207, 352
HpyF3I	CTNAG	2 cut(s)	351, 375
HpySE526I	ACGT	5 cut(s)	30, 66, 192, 213, 225
Hsp92I	GRCGYC	6 cut(s)	14, 30, 213, 225, 300, 363
Hsp92II	CATG	2 cut(s)	58, 715
HspAI	GCGC	3 cut(s)	14, 199, 300
KasI	GGCGCC	2 cut(s)	13, 299
Ksp22I	TGATCA	1 cut(s)	784
Kzo9I	GATC	4 cut(s)	371, 667, 760, 784
LmnI	GCTCC	2 cut(s)	165, 294
Lsp1109I	GCAGC	4 cut(s)	333, 549, 577, 730
LweI	GCATC	2 cut(s)	596, 608
MaeI	CTAG	1 cut(s)	657
MaeII	ACGT	5 cut(s)	30, 66, 192, 213, 225
MaeIII	GTNAC	1 cut(s)	385
MalI	GATC	4 cut(s)	373, 669, 762, 786
MbiI	CCGCTC	2 cut(s)	286, 297
MboI	GATC	4 cut(s)	371, 667, 760, 784
MflI	RGATCY	2 cut(s)	371, 760
MluCI	AATT	2 cut(s)	481, 676
Mly113I	GGCGCC	2 cut(s)	14, 300
MlyI	GAGTC	3 cut(s)	266, 344, 466
MmeI	TCCRAC	1 cut(s)	723
MseI	TTAA	1 cut(s)	444
MspA1I	CMGCKG	1 cut(s)	315
MspI	CCGG	1 cut(s)	758
MspR9I	CCNGG	1 cut(s)	292
MvaI	CCWGG	1 cut(s)	292
MvnI	CGCG	2 cut(s)	199, 368
MwoI	GCNNNNNNNGC	8 cut(s)	115, 118, 121, 178, 187, 196, 207, 352
NarI	GGCGCC	2 cut(s)	14, 300
NdeII	GATC	4 cut(s)	371, 667, 760, 784
NlaIII	CATG	2 cut(s)	58, 715
NlaIV	GGNNCC	3 cut(s)	15, 301, 325
NmeAIII	GCCGAG	2 cut(s)	130, 441
PaeR7I	CTCGAG	1 cut(s)	158
PcsI	WCGNNNNNNNCGW	3 cut(s)	72, 165, 222
PfeI	GAWTC	1 cut(s)	660
PfoI	TCCNGGA	1 cut(s)	290
PleI	GAGTC	3 cut(s)	265, 343, 465
PluTI	GGCGCC	2 cut(s)	17, 303
PmaCI	CACGTG	1 cut(s)	193
PmlI	CACGTG	1 cut(s)	193
PpsI	GAGTC	3 cut(s)	265, 343, 465
Ppu21I	YACGTR	1 cut(s)	193
Psp6I	CCWGG	1 cut(s)	290
PspCI	CACGTG	1 cut(s)	193
PspGI	CCWGG	1 cut(s)	290
PspN4I	GGNNCC	3 cut(s)	15, 301, 325
PspPI	GGNCC	2 cut(s)	183, 531
PspXI	VCTCGAGB	1 cut(s)	158
PstI	CTGCAG	1 cut(s)	567
PsuI	RGATCY	2 cut(s)	371, 760
RsaI	GTAC	1 cut(s)	717
RsaNI	GTAC	1 cut(s)	716
SalI	GTCGAC	1 cut(s)	259
SaqAI	TTAA	1 cut(s)	444
Sau3AI	GATC	4 cut(s)	371, 667, 760, 784
Sau96I	GGNCC	2 cut(s)	183, 531
SchI	GAGTC	3 cut(s)	266, 344, 466
ScrFI	CCNGG	1 cut(s)	292
SfaNI	GCATC	2 cut(s)	596, 608
SfcI	CTRYAG	1 cut(s)	563
SfoI	GGCGCC	2 cut(s)	15, 301
Sfr274I	CTCGAG	1 cut(s)	158
SinI	GGWCC	1 cut(s)	183
SlaI	CTCGAG	1 cut(s)	158
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
Sse9I	AATT	2 cut(s)	481, 676
SspDI	GGCGCC	2 cut(s)	13, 299
SspMI	CTAG	1 cut(s)	657
StyD4I	CCNGG	1 cut(s)	290
TaaI	ACNGT	1 cut(s)	129
TaiI	ACGT	5 cut(s)	33, 69, 195, 216, 228
TaqI	TCGA	5 cut(s)	90, 131, 159, 260, 519
TaqII	GACCGA	2 cut(s)	298, 374
TasI	AATT	2 cut(s)	481, 676
TfiI	GAWTC	1 cut(s)	660
Tru1I	TTAA	1 cut(s)	444
Tru9I	TTAA	1 cut(s)	444
TseI	GCWGC	5 cut(s)	8, 346, 562, 565, 743
TspDTI	ATGAA	3 cut(s)	71, 555, 593
VpaK11BI	GGWCC	1 cut(s)	183
XhoI	CTCGAG	1 cut(s)	158
XmiI	GTMKAC	1 cut(s)	260
XspI	CTAG	1 cut(s)	657
ZraI	GACGTC	3 cut(s)	31, 214, 226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.