Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0002903

Physical Location & Seq

Genomic Coordinates Forward (+)

10113495 .. 10114300

Gene Structure 806 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g11900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGGGGAGGAAGGCGGTGATAATCGTTACCGCAACGGCCGTTTGCGCCGTGGCGGCGGTTTTGGTGGTGCGCCACCGCATGCGGAGCTCGGGACGGTGGGCCCGGGCATCCGCCATCATCAAGGAGCTCGAGGAGAAGTGTGGCACCCCCACTGAGAAGCTGAGGCAGGTGGCTGACGCCATGGCCGTGGAGATGCATGCCGGCCTCGCTTCCGAAGGAGGCAGTAAGCTCAAGATGATCATTAGCTATGTCGACAAACTCCCCACTGGGAATGAGAAAGGGTTGTTTTATGCATTGGATCGATCGGAGGAACAAACTTCCGTGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko00051 ko00052 ko00500 ko00520 ko00521 ko00524 ko01100 ko01110 ko01120 ko01130 ko01200 ko04066 ko04910 ko04930 ko04973 ko05230 map00010 map00051 map00052 map00500 map00520 map00521 map00524 map01100 map01110 map01120 map01130 map01200 map04066 map04910 map04930 map04973 map05230

Pfam Domains

Protein Families

Hexokinase_1 Hexokinase_2

Protein Analysis

110

Amino Acids

11.76

Weight (kDa)

9.15

Isoelectric Point (pI)

45.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002903)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37840
fragaria_vesca	FvH4_1g18730 FvH4_6g32470 FvH4_6g32470 FvH4_6g32470 FvH4_6g32470
malus_domestica	MD02G1194700.v1.1 MD09G1202200.v1.1 MD15G1305100.v1.1 MD17G1183100.v1.1
prunus_persica	Prupe.3G057800_v2.0.a1 Prupe.6G212100_v2.0.a1
pyrus_communis	pycom07g16990 pycom09g11900 pycom09g11910 pycom15g26750 pycom17g19210
rosa_chinensis	RchiOBHm_Chr2g0109591 RchiOBHm_Chr2g0140711
rosa_laevigata	RLG00000017748 RLG00000019894
rosa_multiflora	Rmu_sc0000332.1_g000047 Rmu_sc0003342.1_g000014
rosa_roxburghii	Rroxscaffold_2G00134120
rosa_rugosa	Rorug02G0160900 Rorug02G0161000 Rorug02G0364300 Rorug02G0364400 Rorug02G0364500
rosa_samantha	Rh2AG213300 Rh2AG416000 Rh2BG223500 Rh2BG425600 Rh2CG215300 Rh2CG402200 Rh2DG218800 Rh2DG435500
rosa_wichuraiana	Rw2G034040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	157
Acc36I	ACCTGC	1 cut(s)	157
AccB1I	GGYRCC	1 cut(s)	143
AccI	GTMKAC	1 cut(s)	252
AciI	CCGC	7 cut(s)	14, 30, 53, 56, 76, 82, 111
AclWI	GGATC	1 cut(s)	306
AcoI	YGGCCR	2 cut(s)	36, 183
AcyI	GRCGYC	1 cut(s)	177
AluBI	AGCT	5 cut(s)	87, 127, 160, 229, 246
AluI	AGCT	5 cut(s)	87, 127, 160, 229, 246
Alw21I	GWGCWC	2 cut(s)	89, 129
AlwI	GGATC	1 cut(s)	306
Ama87I	CYCGRG	3 cut(s)	88, 102, 128
AoxI	GGCC	4 cut(s)	36, 99, 183, 202
ApaI	GGGCCC	1 cut(s)	103
AspLEI	GCGC	2 cut(s)	47, 72
AspS9I	GGNCC	2 cut(s)	99, 100
AsuC2I	CCSGG	2 cut(s)	103, 104
AsuHPI	GGTGA	1 cut(s)	28
AvaI	CYCGRG	3 cut(s)	88, 102, 128
BaeGI	GKGCMC	1 cut(s)	103
BanI	GGYRCC	1 cut(s)	143
BanII	GRGCYC	3 cut(s)	89, 103, 129
Bbv12I	GWGCWC	2 cut(s)	89, 129
BbvCI	CCTCAGC	1 cut(s)	161
BccI	CCATC	1 cut(s)	122
BceAI	ACGGC	4 cut(s)	23, 32, 51, 170
BclI	TGATCA	1 cut(s)	237
BcnI	CCSGG	2 cut(s)	103, 104
BfuAI	ACCTGC	1 cut(s)	157
BglI	GCCNNNNNGGC	1 cut(s)	53
BisI	GCNGC	1 cut(s)	54
BlsI	GCNGC	1 cut(s)	55
Bme1390I	CCNGG	2 cut(s)	103, 104
BmeT110I	CYCGRG	3 cut(s)	88, 102, 128
BmgT120I	GGNCC	2 cut(s)	99, 100
BmiI	GGNNCC	2 cut(s)	101, 145
BmrFI	CCNGG	2 cut(s)	103, 104
BmrI	ACTGGG	1 cut(s)	276
BmsI	GCATC	2 cut(s)	116, 183
BmuI	ACTGGG	1 cut(s)	276
Bpu10I	CCTNAGC	1 cut(s)	161
BpuEI	CTTGAG	1 cut(s)	215
BpuMI	CCSGG	2 cut(s)	103, 104
Bsa29I	ATCGAT	1 cut(s)	301
BsaHI	GRCGYC	1 cut(s)	177
BsaJI	CCNNGG	4 cut(s)	48, 102, 180, 186
Bse118I	RCCGGY	1 cut(s)	200
Bse1I	ACTGG	1 cut(s)	271
BseCI	ATCGAT	1 cut(s)	301
BseDI	CCNNGG	4 cut(s)	48, 102, 180, 186
BseGI	GGATG	1 cut(s)	107
BseMII	CTCAG	2 cut(s)	144, 152
BseNI	ACTGG	1 cut(s)	271
BseRI	GAGGAG	1 cut(s)	146
BseSI	GKGCMC	1 cut(s)	103
BseX3I	CGGCCG	1 cut(s)	36
Bsh1285I	CGRYCG	2 cut(s)	39, 305
BshFI	GGCC	4 cut(s)	38, 101, 185, 204
BshNI	GGYRCC	1 cut(s)	143
BshVI	ATCGAT	1 cut(s)	301
BsiEI	CGRYCG	2 cut(s)	39, 305
BsiHKAI	GWGCWC	2 cut(s)	89, 129
BsiHKCI	CYCGRG	3 cut(s)	88, 102, 128
BsiSI	CCGG	2 cut(s)	103, 201
BslFI	GGGAC	1 cut(s)	105
BsmFI	GGGAC	1 cut(s)	105
BsnI	GGCC	4 cut(s)	38, 101, 185, 204
BsoBI	CYCGRG	3 cut(s)	88, 102, 128
Bsp120I	GGGCCC	1 cut(s)	99
Bsp1286I	GDGCHC	3 cut(s)	89, 103, 129
Bsp143I	GATC	3 cut(s)	237, 298, 302
Bsp19I	CCATGG	1 cut(s)	180
BspACI	CCGC	7 cut(s)	14, 30, 53, 56, 76, 82, 111
BspANI	GGCC	4 cut(s)	38, 101, 185, 204
BspCNI	CTCAG	2 cut(s)	145, 153
BspDI	ATCGAT	1 cut(s)	301
BspLI	GGNNCC	2 cut(s)	101, 145
BspMI	ACCTGC	1 cut(s)	157
BspPI	GGATC	1 cut(s)	306
BspT107I	GGYRCC	1 cut(s)	143
BsrFI	RCCGGY	1 cut(s)	200
BsrI	ACTGG	1 cut(s)	271
BssAI	RCCGGY	1 cut(s)	200
BssECI	CCNNGG	4 cut(s)	48, 102, 180, 186
BssMI	GATC	3 cut(s)	237, 298, 302
BssNI	GRCGYC	1 cut(s)	177
BssT1I	CCWWGG	1 cut(s)	180
Bst4CI	ACNGT	1 cut(s)	96
BstACI	GRCGYC	1 cut(s)	177
BstC8I	GCNNGC	3 cut(s)	80, 198, 202
BstDEI	CTNAG	2 cut(s)	153, 161
BstDSI	CCRYGG	3 cut(s)	48, 180, 186
BstF5I	GGATG	1 cut(s)	107
BstHHI	GCGC	2 cut(s)	47, 72
BstKTI	GATC	3 cut(s)	240, 301, 305
BstMBI	GATC	3 cut(s)	237, 298, 302
BstMCI	CGRYCG	2 cut(s)	39, 305
BstMWI	GCNNNNNNNGC	4 cut(s)	44, 53, 84, 206
BstNSI	RCATGY	2 cut(s)	82, 200
BstSCI	CCNGG	2 cut(s)	101, 102
BstSLI	GKGCMC	1 cut(s)	103
BstXI	CCANNNNNNTGG	1 cut(s)	187
BstZI	CGGCCG	1 cut(s)	36
Bsu15I	ATCGAT	1 cut(s)	301
BsuRI	GGCC	4 cut(s)	38, 101, 185, 204
BsuTUI	ATCGAT	1 cut(s)	301
BtgI	CCRYGG	3 cut(s)	48, 180, 186
BtsCI	GGATG	1 cut(s)	107
BtsIMutI	CAGTG	2 cut(s)	150, 264
BveI	ACCTGC	1 cut(s)	157
Cac8I	GCNNGC	3 cut(s)	80, 198, 202
CfoI	GCGC	2 cut(s)	47, 72
Cfr10I	RCCGGY	1 cut(s)	200
Cfr13I	GGNCC	2 cut(s)	99, 100
Cfr9I	CCCGGG	1 cut(s)	102
ClaI	ATCGAT	1 cut(s)	301
CseI	GACGC	1 cut(s)	185
CviAII	CATG	3 cut(s)	79, 181, 197
DdeI	CTNAG	2 cut(s)	153, 161
DpnI	GATC	3 cut(s)	239, 300, 304
DpnII	GATC	3 cut(s)	237, 298, 302
EaeI	YGGCCR	2 cut(s)	36, 183
EagI	CGGCCG	1 cut(s)	36
EciI	GGCGGA	1 cut(s)	100
Ecl136II	GAGCTC	2 cut(s)	87, 127
EclXI	CGGCCG	1 cut(s)	36
Eco130I	CCWWGG	1 cut(s)	180
Eco24I	GRGCYC	3 cut(s)	89, 103, 129
Eco52I	CGGCCG	1 cut(s)	36
Eco53kI	GAGCTC	2 cut(s)	87, 127
Eco88I	CYCGRG	3 cut(s)	88, 102, 128
EcoICRI	GAGCTC	2 cut(s)	87, 127
EcoT14I	CCWWGG	1 cut(s)	180
EcoT22I	ATGCAT	2 cut(s)	198, 295
EcoT38I	GRGCYC	3 cut(s)	89, 103, 129
ErhI	CCWWGG	1 cut(s)	180
FaeI	CATG	3 cut(s)	82, 184, 200
FaiI	YATR	5 cut(s)	80, 182, 198, 249, 291
FaqI	GGGAC	1 cut(s)	105
FatI	CATG	3 cut(s)	78, 180, 196
FbaI	TGATCA	1 cut(s)	237
FblI	GTMKAC	1 cut(s)	252
Fnu4HI	GCNGC	1 cut(s)	54
FokI	GGATG	1 cut(s)	94
FriOI	GRGCYC	3 cut(s)	89, 103, 129
Fsp4HI	GCNGC	1 cut(s)	54
GlaI	GCGC	2 cut(s)	46, 71
GluI	GCNGC	1 cut(s)	54
HaeIII	GGCC	4 cut(s)	38, 101, 185, 204
HapII	CCGG	2 cut(s)	103, 201
HgaI	GACGC	1 cut(s)	185
HhaI	GCGC	2 cut(s)	47, 72
Hin1I	GRCGYC	1 cut(s)	177
Hin1II	CATG	3 cut(s)	82, 184, 200
Hin6I	GCGC	2 cut(s)	45, 70
HinP1I	GCGC	2 cut(s)	45, 70
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HpaII	CCGG	2 cut(s)	103, 201
HphI	GGTGA	1 cut(s)	28
Hpy166II	GTNNAC	1 cut(s)	253
Hpy188I	TCNGA	2 cut(s)	214, 307
Hpy188III	TCNNGA	2 cut(s)	90, 232
Hpy8I	GTNNAC	1 cut(s)	253
HpyAV	CCTTC	2 cut(s)	4, 209
HpyCH4III	ACNGT	1 cut(s)	96
HpyCH4V	TGCA	2 cut(s)	196, 293
HpyF10VI	GCNNNNNNNGC	4 cut(s)	44, 53, 84, 206
HpyF3I	CTNAG	2 cut(s)	153, 161
Hsp92I	GRCGYC	1 cut(s)	177
Hsp92II	CATG	3 cut(s)	82, 184, 200
HspAI	GCGC	2 cut(s)	45, 70
KroI	GCCGGC	1 cut(s)	200
KroNI	GCCGGC	1 cut(s)	202
Ksp22I	TGATCA	1 cut(s)	237
Kzo9I	GATC	3 cut(s)	237, 298, 302
LmnI	GCTCC	2 cut(s)	84, 124
LpnPI	CCDG	4 cut(s)	116, 152, 214, 252
LweI	GCATC	2 cut(s)	116, 183
MaeIII	GTNAC	1 cut(s)	25
MalI	GATC	3 cut(s)	239, 300, 304
MboI	GATC	3 cut(s)	237, 298, 302
MhlI	GDGCHC	3 cut(s)	89, 103, 129
MnlI	CCTC	5 cut(s)	124, 156, 212, 215, 301
Mph1103I	ATGCAT	2 cut(s)	198, 295
MroNI	GCCGGC	1 cut(s)	200
MslI	CAYNNNNRTG	1 cut(s)	185
MspI	CCGG	2 cut(s)	103, 201
MspR9I	CCNGG	2 cut(s)	103, 104
MwoI	GCNNNNNNNGC	4 cut(s)	44, 53, 84, 206
NaeI	GCCGGC	1 cut(s)	202
NciI	CCSGG	2 cut(s)	103, 104
NcoI	CCATGG	1 cut(s)	180
NdeII	GATC	3 cut(s)	237, 298, 302
NgoMIV	GCCGGC	1 cut(s)	200
NlaIII	CATG	3 cut(s)	82, 184, 200
NlaIV	GGNNCC	2 cut(s)	101, 145
NsiI	ATGCAT	2 cut(s)	198, 295
NspI	RCATGY	2 cut(s)	82, 200
PaeI	GCATGC	2 cut(s)	82, 200
PaeR7I	CTCGAG	1 cut(s)	128
PaqCI	CACCTGC	1 cut(s)	157
PcsI	WCGNNNNNNNCGW	1 cut(s)	183
PdiI	GCCGGC	1 cut(s)	202
PkrI	GCNGC	1 cut(s)	55
Ple19I	CGATCG	1 cut(s)	305
Psp124BI	GAGCTC	2 cut(s)	89, 129
PspN4I	GGNNCC	2 cut(s)	101, 145
PspOMI	GGGCCC	1 cut(s)	99
PspPI	GGNCC	2 cut(s)	99, 100
PspXI	VCTCGAGB	1 cut(s)	128
PvuI	CGATCG	1 cut(s)	305
RseI	CAYNNNNRTG	1 cut(s)	185
SacI	GAGCTC	2 cut(s)	89, 129
SalI	GTCGAC	1 cut(s)	251
SatI	GCNGC	1 cut(s)	54
Sau3AI	GATC	3 cut(s)	237, 298, 302
Sau96I	GGNCC	2 cut(s)	99, 100
ScrFI	CCNGG	2 cut(s)	103, 104
SduI	GDGCHC	3 cut(s)	89, 103, 129
SetI	ASST	6 cut(s)	89, 129, 162, 171, 231, 248
SfaNI	GCATC	2 cut(s)	116, 183
Sfr274I	CTCGAG	1 cut(s)	128
SlaI	CTCGAG	1 cut(s)	128
SmaI	CCCGGG	1 cut(s)	104
SmiMI	CAYNNNNRTG	1 cut(s)	185
SmlI	CTYRAG	2 cut(s)	128, 230
SmoI	CTYRAG	2 cut(s)	128, 230
SphI	GCATGC	2 cut(s)	82, 200
SrfI	GCCCGGGC	1 cut(s)	104
SsiI	CCGC	7 cut(s)	14, 30, 53, 56, 76, 82, 111
SstI	GAGCTC	2 cut(s)	89, 129
StyD4I	CCNGG	2 cut(s)	101, 102
StyI	CCWWGG	1 cut(s)	180
TaaI	ACNGT	1 cut(s)	96
TaqI	TCGA	3 cut(s)	129, 252, 301
TauI	GCSGC	1 cut(s)	56
TscAI	CASTG	2 cut(s)	157, 271
TspGWI	ACGGA	1 cut(s)	310
TspMI	CCCGGG	1 cut(s)	102
TspRI	CASTG	2 cut(s)	157, 271
XceI	RCATGY	2 cut(s)	82, 200
XhoI	CTCGAG	1 cut(s)	128
XmaI	CCCGGG	1 cut(s)	102
XmiI	GTMKAC	1 cut(s)	252
Zsp2I	ATGCAT	2 cut(s)	198, 295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.