Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002903

Physical Location & Seq

Genomic Coordinates Reverse (-)

46223729 .. 46228565

Gene Structure 4837 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0364400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

ATGATGGCTCTCCGACCGAGAACCAACCACCGAACCCTCACAAACCCATCTCTCATTCACGTCTTCTCGACTTACCCATCCGACTCAACCGACCCAACTGAACCCAACCCCCAGTCCGACTCCTCCTCTCTCTCCAATTACTTCAGCGATGTCAAAGCCAGCCTCAGGCAACAGTCACAGTCACAGTCACAGCAACAACACAGCAGACCCACTTCATACTCACAGCAACAACACTTCAGACCCACTTCTCAGAACAACAACCCTTCTCTCTCCCGGCCTTCCAAGGCTGCCTCTCTGGAGGAAATCCGCAAAAACCTTGCGGAGTTTCGGCTTCGATCCATTGGGCCAAACCCCACTGAATCAAACTCTGCACCTCCACCTCCACCTCCGAACCCCATTTCGTTTGAGAAGCTCTATAACAAAGGCGTGAGCAGCCGCAAGATGGAGTTTCAGACGGTTCGGGAGAGTCTGAAGCTCATAAGGCTCAATGCGAATGAGCAGAGTGAGAGGAAGGGTGGGGGATTGTCGTTGTTGAGGTTCAAAAGTTTGGATATGAATCCGAGGCAGGATGTGGGTGTTAGGAAGGGAGCACTTACAAGTTTATTTGATAAGGAGAAGGAGAGAAGTGGAGAGAAGAGCTCGGATGCATTGAAGACTGAGTTTGTGAAGATTTATAGCTATAAAGAGTTGGGGGAGAAGCTGAGGAAGTTGAGGCCCGAGGAAGGGAAGGAAGGGGGCGGGTTTACATTGGGGGAGTTCAGTGAGAGGTTGGTCAAGTTGAGGAAGATGGAAGAGAATGAGTCCGAGTCTTGGGTTGGGGGATGGAATACTGACTTGAAGCAGAGCTTGTTGAAGATATCCGGAGAGGAGAAGCATAGGAAAAGTCCGATGCAGAGGCTTCATATGATAGATATAGGTCAAACTCCTGATTATATAATGAAACCCCCAAAGGAAGGCTTGGTTGAGAAGTATTTCCATCCAGATAACATGTCTTCTGCAGAAAAGCTGAAAATTGAGCTTGGCAAAGTTAGAGATGAATTTAAAATGTCAGAGTCAGATTGTGGTTCTGCACGAGTTCAAGTGGCACAACTCACAACTAAGATCAAGCATCTATCTTCAGTTCTACACAAAAAGGATAAGCATTCACTTAAGGGTCTTCAAGCAATGGTGCAGAGGAGGAAGAAGCTATTAAAGTATCTCCGAATAACTGACTGGGACTCTTACTGCCTTGTTCTCTCCAAACTTGGTCTTCGGGACACGCCAGATGTCAAACAAGAGTACAAGAAACATTACAAGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko00051 ko00052 ko00500 ko00520 ko00521 ko00524 ko01100 ko01110 ko01120 ko01130 ko01200 ko04066 ko04910 ko04930 ko04973 ko05230 map00010 map00051 map00052 map00500 map00520 map00521 map00524 map01100 map01110 map01120 map01130 map01200 map04066 map04910 map04930 map04973 map05230

Pfam Domains

Protein Families

Hexokinase_1 Hexokinase_2

Protein Analysis

433

Amino Acids

49.52

Weight (kDa)

9.73

Isoelectric Point (pI)

54.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S15	PF00312	343 - 418	1.5e-22	Ribosomal protein S15

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002903)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37840
fragaria_vesca	FvH4_1g18730 FvH4_6g32470 FvH4_6g32470 FvH4_6g32470 FvH4_6g32470
malus_domestica	MD02G1194700.v1.1 MD09G1202200.v1.1 MD15G1305100.v1.1 MD17G1183100.v1.1
prunus_persica	Prupe.3G057800_v2.0.a1 Prupe.6G212100_v2.0.a1
pyrus_communis	pycom07g16990 pycom09g11900 pycom09g11910 pycom15g26750 pycom17g19210
rosa_chinensis	RchiOBHm_Chr2g0109591 RchiOBHm_Chr2g0140711
rosa_laevigata	RLG00000017748 RLG00000019894
rosa_multiflora	Rmu_sc0000332.1_g000047 Rmu_sc0003342.1_g000014
rosa_roxburghii	Rroxscaffold_2G00134120
rosa_rugosa	Rorug02G0160900 Rorug02G0161000 Rorug02G0364300 Rorug02G0364400 Rorug02G0364500
rosa_samantha	Rh2AG213300 Rh2AG416000 Rh2BG223500 Rh2BG425600 Rh2CG215300 Rh2CG402200 Rh2DG218800 Rh2DG435500
rosa_wichuraiana	Rw2G034040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	860
AciI	CCGC	4 cut(s)	307, 320, 436, 738
AclWI	GGATC	1 cut(s)	330
AcsI	RAATTY	1 cut(s)	1037
AcuI	CTGAAG	4 cut(s)	127, 220, 491, 1101
AfaI	GTAC	1 cut(s)	1280
AfiI	CCNNNNNNNGG	6 cut(s)	165, 442, 722, 723, 810, 953
AflII	CTTAAG	1 cut(s)	1148
AflIII	ACRYGT	1 cut(s)	987
AgsI	TTSAA	6 cut(s)	541, 652, 838, 853, 1079, 1160
AjiI	CACGTC	1 cut(s)	61
AluBI	AGCT	9 cut(s)	412, 475, 639, 678, 700, 846, 1006, 1018, 1186
AluI	AGCT	9 cut(s)	412, 475, 639, 678, 700, 846, 1006, 1018, 1186
Alw21I	GWGCWC	2 cut(s)	592, 641
AlwI	GGATC	1 cut(s)	330
Ama87I	CYCGRG	1 cut(s)	716
Aor13HI	TCCGGA	1 cut(s)	860
AoxI	GGCC	3 cut(s)	275, 344, 713
ApeKI	GCWGC	2 cut(s)	287, 432
ApoI	RAATTY	1 cut(s)	1037
Asp700I	GAANNNNTTC	1 cut(s)	971
AspS9I	GGNCC	2 cut(s)	344, 714
AsuC2I	CCSGG	1 cut(s)	274
AvaI	CYCGRG	1 cut(s)	716
AxyI	CCTNAGG	1 cut(s)	164
BanII	GRGCYC	1 cut(s)	641
BauI	CACGAG	1 cut(s)	1071
BbsI	GAAGAC	5 cut(s)	55, 659, 984, 1148, 1241
Bbv12I	GWGCWC	2 cut(s)	592, 641
BbvCI	CCTCAGC	1 cut(s)	701
BbvI	GCAGC	2 cut(s)	274, 444
BccI	CCATC	6 cut(s)	55, 85, 436, 781, 816, 984
BcnI	CCSGG	1 cut(s)	274
BfmI	CTRYAG	1 cut(s)	996
BfrI	CTTAAG	1 cut(s)	1148
BisI	GCNGC	3 cut(s)	288, 433, 436
BlsI	GCNGC	3 cut(s)	289, 434, 437
Bme1390I	CCNGG	1 cut(s)	274
BmeT110I	CYCGRG	1 cut(s)	716
BmgBI	CACGTC	1 cut(s)	61
BmgT120I	GGNCC	2 cut(s)	344, 714
BmrFI	CCNGG	1 cut(s)	274
BmrI	ACTGGG	2 cut(s)	106, 1222
BmsI	GCATC	3 cut(s)	634, 879, 1117
BmuI	ACTGGG	2 cut(s)	106, 1222
BpiI	GAAGAC	5 cut(s)	55, 659, 984, 1148, 1241
BplI	GAGNNNNNCTC	2 cut(s)	623, 655
BpmI	CTGGAG	1 cut(s)	317
Bpu10I	CCTNAGC	1 cut(s)	701
BpuMI	CCSGG	1 cut(s)	274
BsaBI	GATNNNNATC	1 cut(s)	555
BsaJI	CCNNGG	3 cut(s)	282, 560, 717
BsaWI	WCCGGW	1 cut(s)	860
Bsc4I	CCNNNNNNNGG	6 cut(s)	165, 442, 722, 723, 810, 953
Bse1I	ACTGG	2 cut(s)	112, 1217
Bse21I	CCTNAGG	1 cut(s)	164
Bse3DI	GCAATG	1 cut(s)	1170
Bse8I	GATNNNNATC	1 cut(s)	555
BseAI	TCCGGA	1 cut(s)	860
BseDI	CCNNGG	3 cut(s)	282, 560, 717
BseGI	GGATG	5 cut(s)	77, 574, 649, 827, 976
BseJI	GATNNNNATC	1 cut(s)	555
BseLI	CCNNNNNNNGG	6 cut(s)	165, 442, 722, 723, 810, 953
BseMI	GCAATG	1 cut(s)	1170
BseMII	CTCAG	4 cut(s)	178, 263, 648, 692
BseNI	ACTGG	2 cut(s)	112, 1217
BseRI	GAGGAG	4 cut(s)	112, 115, 881, 1189
BseXI	GCAGC	2 cut(s)	274, 444
BsgI	GTGCAG	3 cut(s)	354, 1053, 1190
Bsh1285I	CGRYCG	1 cut(s)	17
BshFI	GGCC	3 cut(s)	277, 346, 715
BsiEI	CGRYCG	1 cut(s)	17
BsiHKAI	GWGCWC	2 cut(s)	592, 641
BsiHKCI	CYCGRG	1 cut(s)	716
BsiSI	CCGG	2 cut(s)	274, 861
BslFI	GGGAC	2 cut(s)	1229, 1268
BslI	CCNNNNNNNGG	6 cut(s)	165, 442, 722, 723, 810, 953
BsmFI	GGGAC	2 cut(s)	1229, 1268
BsmI	GAATGC	1 cut(s)	1141
BsnI	GGCC	3 cut(s)	277, 346, 715
BsoBI	CYCGRG	1 cut(s)	716
Bsp1286I	GDGCHC	2 cut(s)	592, 641
Bsp13I	TCCGGA	1 cut(s)	860
Bsp143I	GATC	2 cut(s)	335, 1101
BspACI	CCGC	4 cut(s)	307, 320, 436, 738
BspANI	GGCC	3 cut(s)	277, 346, 715
BspCNI	CTCAG	4 cut(s)	177, 262, 649, 693
BspEI	TCCGGA	1 cut(s)	860
BspMAI	CTGCAG	1 cut(s)	1000
BspPI	GGATC	1 cut(s)	330
BspQI	GCTCTTC	1 cut(s)	629
BspTI	CTTAAG	1 cut(s)	1148
BsrDI	GCAATG	1 cut(s)	1170
BsrI	ACTGG	2 cut(s)	112, 1217
BssECI	CCNNGG	3 cut(s)	282, 560, 717
BssMI	GATC	2 cut(s)	335, 1101
BssSI	CACGAG	1 cut(s)	1071
BssT1I	CCWWGG	1 cut(s)	282
Bst2BI	CACGAG	1 cut(s)	1071
Bst4CI	ACNGT	4 cut(s)	174, 180, 186, 457
Bst6I	CTCTTC	2 cut(s)	629, 786
BstAFI	CTTAAG	1 cut(s)	1148
BstC8I	GCNNGC	1 cut(s)	160
BstDEI	CTNAG	5 cut(s)	164, 249, 657, 701, 1098
BstF5I	GGATG	5 cut(s)	77, 574, 649, 827, 976
BstKTI	GATC	2 cut(s)	338, 1104
BstMBI	GATC	2 cut(s)	335, 1101
BstMCI	CGRYCG	1 cut(s)	17
BstMWI	GCNNNNNNNGC	2 cut(s)	432, 481
BstNSI	RCATGY	1 cut(s)	991
BstSCI	CCNGG	1 cut(s)	272
BstSFI	CTRYAG	1 cut(s)	996
BstV1I	GCAGC	2 cut(s)	274, 444
BstV2I	GAAGAC	5 cut(s)	55, 659, 984, 1148, 1241
Bsu36I	CCTNAGG	1 cut(s)	164
BsuRI	GGCC	3 cut(s)	277, 346, 715
BtgZI	GCGATG	1 cut(s)	162
BtrI	CACGTC	1 cut(s)	61
BtsCI	GGATG	5 cut(s)	77, 574, 649, 827, 976
BtsIMutI	CAGTG	2 cut(s)	354, 766
Cac8I	GCNNGC	1 cut(s)	160
Cfr13I	GGNCC	2 cut(s)	344, 714
Csp6I	GTAC	1 cut(s)	1279
CviAII	CATG	1 cut(s)	988
CviQI	GTAC	1 cut(s)	1279
DdeI	CTNAG	5 cut(s)	164, 249, 657, 701, 1098
DpnI	GATC	2 cut(s)	337, 1103
DpnII	GATC	2 cut(s)	335, 1101
DraI	TTTAAA	1 cut(s)	1042
Eam1104I	CTCTTC	2 cut(s)	629, 786
EarI	CTCTTC	2 cut(s)	629, 786
Ecl136II	GAGCTC	1 cut(s)	639
Eco130I	CCWWGG	1 cut(s)	282
Eco24I	GRGCYC	1 cut(s)	641
Eco32I	GATATC	1 cut(s)	858
Eco53kI	GAGCTC	1 cut(s)	639
Eco57I	CTGAAG	4 cut(s)	127, 220, 491, 1101
Eco81I	CCTNAGG	1 cut(s)	164
Eco88I	CYCGRG	1 cut(s)	716
EcoICRI	GAGCTC	1 cut(s)	639
EcoRV	GATATC	1 cut(s)	858
EcoT14I	CCWWGG	1 cut(s)	282
EcoT22I	ATGCAT	1 cut(s)	649
EcoT38I	GRGCYC	1 cut(s)	641
ErhI	CCWWGG	1 cut(s)	282
FaeI	CATG	1 cut(s)	991
FalI	AAGNNNNNCTT	4 cut(s)	830, 862, 941, 973
FaqI	GGGAC	2 cut(s)	1229, 1268
FatI	CATG	1 cut(s)	987
FauI	CCCGC	1 cut(s)	731
FauNDI	CATATG	1 cut(s)	903
Fnu4HI	GCNGC	3 cut(s)	288, 433, 436
FokI	GGATG	5 cut(s)	64, 581, 656, 834, 963
FriOI	GRGCYC	1 cut(s)	641
Fsp4HI	GCNGC	3 cut(s)	288, 433, 436
GluI	GCNGC	3 cut(s)	288, 433, 436
GsuI	CTGGAG	1 cut(s)	317
HaeIII	GGCC	3 cut(s)	277, 346, 715
HapII	CCGG	2 cut(s)	274, 861
Hin1II	CATG	1 cut(s)	991
HinfI	GANTC	9 cut(s)	83, 119, 359, 466, 556, 800, 806, 1052, 1217
HpaII	CCGG	2 cut(s)	274, 861
Hpy166II	GTNNAC	1 cut(s)	744
Hpy188III	TCNNGA	7 cut(s)	67, 296, 461, 861, 926, 980, 1253
Hpy8I	GTNNAC	1 cut(s)	744
HpyAV	CCTTC	9 cut(s)	273, 288, 505, 577, 610, 716, 721, 725, 947
HpyCH4III	ACNGT	4 cut(s)	174, 180, 186, 457
HpyCH4IV	ACGT	1 cut(s)	60
HpyCH4V	TGCA	6 cut(s)	371, 647, 892, 998, 1070, 1171
HpyF10VI	GCNNNNNNNGC	2 cut(s)	432, 481
HpyF3I	CTNAG	5 cut(s)	164, 249, 657, 701, 1098
HpySE526I	ACGT	1 cut(s)	60
Hsp92II	CATG	1 cut(s)	991
Kpn2I	TCCGGA	1 cut(s)	860
Kzo9I	GATC	2 cut(s)	335, 1101
LguI	GCTCTTC	1 cut(s)	629
LmnI	GCTCC	1 cut(s)	587
Lsp1109I	GCAGC	2 cut(s)	274, 444
LweI	GCATC	3 cut(s)	634, 879, 1117
MaeII	ACGT	1 cut(s)	60
MaeIII	GTNAC	3 cut(s)	174, 180, 186
MalI	GATC	2 cut(s)	337, 1103
MboI	GATC	2 cut(s)	335, 1101
MhlI	GDGCHC	2 cut(s)	592, 641
MluCI	AATT	4 cut(s)	136, 1011, 1037, 1297
MlyI	GAGTC	7 cut(s)	77, 113, 475, 809, 815, 1061, 1211
MmeI	TCCRAC	3 cut(s)	37, 105, 141
Mph1103I	ATGCAT	1 cut(s)	649
MroI	TCCGGA	1 cut(s)	860
MroXI	GAANNNNTTC	1 cut(s)	971
MseI	TTAA	3 cut(s)	1041, 1149, 1190
MspCI	CTTAAG	1 cut(s)	1148
MspI	CCGG	2 cut(s)	274, 861
MspR9I	CCNGG	1 cut(s)	274
Mva1269I	GAATGC	1 cut(s)	1141
MwoI	GCNNNNNNNGC	2 cut(s)	432, 481
NciI	CCSGG	1 cut(s)	274
NdeI	CATATG	1 cut(s)	903
NdeII	GATC	2 cut(s)	335, 1101
NlaIII	CATG	1 cut(s)	991
NmuCI	GTSAC	3 cut(s)	174, 180, 186
NsiI	ATGCAT	1 cut(s)	649
NspI	RCATGY	1 cut(s)	991
PciI	ACATGT	1 cut(s)	987
PciSI	GCTCTTC	1 cut(s)	629
PctI	GAATGC	1 cut(s)	1141
PdmI	GAANNNNTTC	1 cut(s)	971
PfeI	GAWTC	2 cut(s)	359, 556
PkrI	GCNGC	3 cut(s)	289, 434, 437
PleI	GAGTC	7 cut(s)	77, 113, 474, 808, 814, 1060, 1211
PpsI	GAGTC	7 cut(s)	77, 113, 474, 808, 814, 1060, 1211
PscI	ACATGT	1 cut(s)	987
Psp124BI	GAGCTC	1 cut(s)	641
PspPI	GGNCC	2 cut(s)	344, 714
PstI	CTGCAG	1 cut(s)	1000
RsaI	GTAC	1 cut(s)	1280
RsaNI	GTAC	1 cut(s)	1279
SacI	GAGCTC	1 cut(s)	641
SapI	GCTCTTC	1 cut(s)	629
SaqAI	TTAA	3 cut(s)	1041, 1149, 1190
SatI	GCNGC	3 cut(s)	288, 433, 436
Sau3AI	GATC	2 cut(s)	335, 1101
Sau96I	GGNCC	2 cut(s)	344, 714
SchI	GAGTC	7 cut(s)	77, 113, 475, 809, 815, 1061, 1211
ScrFI	CCNGG	1 cut(s)	274
SduI	GDGCHC	2 cut(s)	592, 641
SfaNI	GCATC	3 cut(s)	634, 879, 1117
SfcI	CTRYAG	1 cut(s)	996
SmlI	CTYRAG	1 cut(s)	1148
SmoI	CTYRAG	1 cut(s)	1148
Sse9I	AATT	4 cut(s)	136, 1011, 1037, 1297
SsiI	CCGC	4 cut(s)	307, 320, 436, 738
SstI	GAGCTC	1 cut(s)	641
StyD4I	CCNGG	1 cut(s)	272
StyI	CCWWGG	1 cut(s)	282
TaaI	ACNGT	4 cut(s)	174, 180, 186, 457
TaiI	ACGT	1 cut(s)	63
TaqI	TCGA	2 cut(s)	68, 334
TaqII	GACCGA	1 cut(s)	31
TasI	AATT	4 cut(s)	136, 1011, 1037, 1297
TatI	WGTACW	1 cut(s)	1278
TauI	GCSGC	1 cut(s)	438
TfiI	GAWTC	2 cut(s)	359, 556
Tru1I	TTAA	3 cut(s)	1041, 1149, 1190
Tru9I	TTAA	3 cut(s)	1041, 1149, 1190
TscAI	CASTG	2 cut(s)	361, 766
TseFI	GTSAC	3 cut(s)	174, 180, 186
TseI	GCWGC	2 cut(s)	287, 432
Tsp45I	GTSAC	3 cut(s)	174, 180, 186
TspDTI	ATGAA	5 cut(s)	204, 569, 890, 953, 1050
TspRI	CASTG	2 cut(s)	361, 766
Vha464I	CTTAAG	1 cut(s)	1148
XapI	RAATTY	1 cut(s)	1037
XceI	RCATGY	1 cut(s)	991
XmnI	GAANNNNTTC	1 cut(s)	971
Zsp2I	ATGCAT	1 cut(s)	649

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.