Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000332.1

Orthogroup ID

OG0002903

Physical Location & Seq

Genomic Coordinates Reverse (-)

206401 .. 206760

Gene Structure 360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000332.1_g000047.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

atggtgagggaagttgtcgccgaggtttgtgacattgttgcagaacgtggtgctcgtcttgctggagctggaattcttgggatcataaagaagcttgggagaattgaaaacaagagaagtatagtgaccgtggaaggcgggctttacgagcactacagagtcttcagaaattaccttaacagtggtgtctgggaaatgcttggtaataatctttcggacaatgttgttattgaaaattctcatggtggttcaggaactggagctttatatctagctgcttcacaaatgaaggatgctgctaaatctcaaatgcaggattctgatcctcaacctgaaccccaacccgaacctgaattttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001678 GO:0003674 GO:0003824 GO:0004396 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005975 GO:0006082 GO:0006090 GO:0006091 GO:0006096 GO:0006139 GO:0006163 GO:0006164 GO:0006165 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006754 GO:0006757 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006974 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009132 GO:0009135 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009166 GO:0009167 GO:0009168 GO:0009179 GO:0009185 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009411 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0010224 GO:0016052 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0018130 GO:0019158 GO:0019200 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019439 GO:0019637 GO:0019693 GO:0019725 GO:0019752 GO:0032787 GO:0033500 GO:0033554 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0042221 GO:0042592 GO:0042593 GO:0042866 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044262 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046031 GO:0046034 GO:0046390 GO:0046394 GO:0046434 GO:0046483 GO:0046496 GO:0046700 GO:0046835 GO:0046939 GO:0048878 GO:0050896 GO:0051186 GO:0051188 GO:0051716 GO:0055082 GO:0055086 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0072521 GO:0072522 GO:0072524 GO:0072525 GO:0090407 GO:1901135 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00051 ko00052 ko00500 ko00520 ko00521 ko00524 ko01100 ko01110 ko01120 ko01130 ko01200 ko04066 ko04910 ko04930 ko04973 ko05230 map00010 map00051 map00052 map00500 map00520 map00521 map00524 map01100 map01110 map01120 map01130 map01200 map04066 map04910 map04930 map04973 map05230

Pfam Domains

Protein Families

Hexokinase_1 Hexokinase_2

Protein Analysis

119

Amino Acids

12.96

Weight (kDa)

5.14

Isoelectric Point (pI)

42.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002903)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37840
fragaria_vesca	FvH4_1g18730 FvH4_6g32470 FvH4_6g32470 FvH4_6g32470 FvH4_6g32470
malus_domestica	MD02G1194700.v1.1 MD09G1202200.v1.1 MD15G1305100.v1.1 MD17G1183100.v1.1
prunus_persica	Prupe.3G057800_v2.0.a1 Prupe.6G212100_v2.0.a1
pyrus_communis	pycom07g16990 pycom09g11900 pycom09g11910 pycom15g26750 pycom17g19210
rosa_chinensis	RchiOBHm_Chr2g0109591 RchiOBHm_Chr2g0140711
rosa_laevigata	RLG00000017748 RLG00000019894
rosa_multiflora	Rmu_sc0000332.1_g000047 Rmu_sc0003342.1_g000014
rosa_roxburghii	Rroxscaffold_2G00134120
rosa_rugosa	Rorug02G0160900 Rorug02G0161000 Rorug02G0364300 Rorug02G0364400 Rorug02G0364500
rosa_samantha	Rh2AG213300 Rh2AG416000 Rh2BG223500 Rh2BG425600 Rh2CG215300 Rh2CG402200 Rh2DG218800 Rh2DG435500
rosa_wichuraiana	Rw2G034040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	138
AclWI	GGATC	2 cut(s)	89, 317
AcsI	RAATTY	3 cut(s)	72, 235, 353
AcuI	CTGAAG	1 cut(s)	148
AgsI	TTSAA	2 cut(s)	107, 233
AluBI	AGCT	4 cut(s)	68, 94, 263, 275
AluI	AGCT	4 cut(s)	68, 94, 263, 275
Alw21I	GWGCWC	2 cut(s)	55, 153
AlwI	GGATC	2 cut(s)	89, 317
AlwNI	CAGNNNCTG	1 cut(s)	257
ApeKI	GCWGC	2 cut(s)	275, 296
ApoI	RAATTY	3 cut(s)	72, 235, 353
AsuHPI	GGTGA	1 cut(s)	16
BbsI	GAAGAC	1 cut(s)	154
Bbv12I	GWGCWC	2 cut(s)	55, 153
BbvI	GCAGC	2 cut(s)	262, 283
BfaI	CTAG	1 cut(s)	272
BfmI	CTRYAG	1 cut(s)	154
BisI	GCNGC	2 cut(s)	276, 297
BlsI	GCNGC	2 cut(s)	277, 298
BmsI	GCATC	1 cut(s)	283
BpiI	GAAGAC	1 cut(s)	154
BpmI	CTGGAG	2 cut(s)	84, 279
BsaBI	GATNNNNATC	1 cut(s)	321
BsaJI	CCNNGG	2 cut(s)	21, 129
Bse1I	ACTGG	1 cut(s)	262
Bse8I	GATNNNNATC	1 cut(s)	321
BseDI	CCNNGG	2 cut(s)	21, 129
BseGI	GGATG	1 cut(s)	298
BseJI	GATNNNNATC	1 cut(s)	321
BseNI	ACTGG	1 cut(s)	262
BseXI	GCAGC	2 cut(s)	262, 283
BsiHKAI	GWGCWC	2 cut(s)	55, 153
Bsp1286I	GDGCHC	2 cut(s)	55, 153
Bsp143I	GATC	2 cut(s)	81, 322
BspACI	CCGC	1 cut(s)	138
BspPI	GGATC	2 cut(s)	89, 317
BsrI	ACTGG	1 cut(s)	262
BssECI	CCNNGG	2 cut(s)	21, 129
BssMI	GATC	2 cut(s)	81, 322
Bst4CI	ACNGT	2 cut(s)	130, 182
BstC8I	GCNNGC	1 cut(s)	140
BstDSI	CCRYGG	1 cut(s)	129
BstF5I	GGATG	1 cut(s)	298
BstKTI	GATC	2 cut(s)	84, 325
BstMBI	GATC	2 cut(s)	81, 322
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 148
BstSFI	CTRYAG	1 cut(s)	154
BstV1I	GCAGC	2 cut(s)	262, 283
BstV2I	GAAGAC	1 cut(s)	154
BtgI	CCRYGG	1 cut(s)	129
BtsCI	GGATG	1 cut(s)	298
BtsIMutI	CAGTG	1 cut(s)	187
Cac8I	GCNNGC	1 cut(s)	140
CaiI	CAGNNNCTG	1 cut(s)	257
CviAII	CATG	1 cut(s)	242
CviJI	RGCY	5 cut(s)	68, 94, 142, 263, 275
CviKI_1	RGCY	5 cut(s)	68, 94, 142, 263, 275
DpnI	GATC	2 cut(s)	83, 324
DpnII	GATC	2 cut(s)	81, 322
Eco57I	CTGAAG	1 cut(s)	148
EcoRI	GAATTC	1 cut(s)	72
FaeI	CATG	1 cut(s)	245
FaiI	YATR	4 cut(s)	86, 122, 243, 268
FalI	AAGNNNNNCTT	2 cut(s)	126, 158
FatI	CATG	1 cut(s)	241
FauI	CCCGC	1 cut(s)	131
Fnu4HI	GCNGC	2 cut(s)	276, 297
FokI	GGATG	1 cut(s)	305
Fsp4HI	GCNGC	2 cut(s)	276, 297
FspBI	CTAG	1 cut(s)	272
GluI	GCNGC	2 cut(s)	276, 297
GsuI	CTGGAG	2 cut(s)	84, 279
Hin1II	CATG	1 cut(s)	245
HindIII	AAGCTT	1 cut(s)	92
HinfI	GANTC	2 cut(s)	159, 317
HphI	GGTGA	1 cut(s)	16
Hpy188I	TCNGA	3 cut(s)	167, 217, 322
Hpy188III	TCNNGA	1 cut(s)	252
HpyAV	CCTTC	2 cut(s)	128, 283
HpyCH4III	ACNGT	2 cut(s)	130, 182
HpyCH4IV	ACGT	1 cut(s)	46
HpyCH4V	TGCA	2 cut(s)	41, 313
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 148
HpySE526I	ACGT	1 cut(s)	46
Hsp92II	CATG	1 cut(s)	245
Kzo9I	GATC	2 cut(s)	81, 322
LmnI	GCTCC	2 cut(s)	65, 260
LpnPI	CCDG	7 cut(s)	48, 54, 175, 237, 243, 299, 345
Lsp1109I	GCAGC	2 cut(s)	262, 283
LweI	GCATC	1 cut(s)	283
MaeI	CTAG	1 cut(s)	272
MaeII	ACGT	1 cut(s)	46
MaeIII	GTNAC	2 cut(s)	29, 124
MalI	GATC	2 cut(s)	83, 324
MboI	GATC	2 cut(s)	81, 322
MboII	GAAGA	1 cut(s)	154
MhlI	GDGCHC	2 cut(s)	55, 153
MluCI	AATT	5 cut(s)	72, 102, 169, 235, 353
MlyI	GAGTC	1 cut(s)	168
MnlI	CCTC	2 cut(s)	16, 336
MseI	TTAA	2 cut(s)	177, 358
MwoI	GCNNNNNNNGC	2 cut(s)	59, 148
NdeII	GATC	2 cut(s)	81, 322
NlaIII	CATG	1 cut(s)	245
NmeAIII	GCCGAG	1 cut(s)	46
NmuCI	GTSAC	2 cut(s)	29, 124
PcsI	WCGNNNNNNNCGW	1 cut(s)	52
PfeI	GAWTC	1 cut(s)	317
PkrI	GCNGC	2 cut(s)	277, 298
PleI	GAGTC	1 cut(s)	167
PpsI	GAGTC	1 cut(s)	167
PstNI	CAGNNNCTG	1 cut(s)	257
SaqAI	TTAA	2 cut(s)	177, 358
SatI	GCNGC	2 cut(s)	276, 297
Sau3AI	GATC	2 cut(s)	81, 322
SchI	GAGTC	1 cut(s)	168
SduI	GDGCHC	2 cut(s)	55, 153
SetI	ASST	9 cut(s)	27, 49, 70, 96, 177, 265, 277, 334, 352
SfaNI	GCATC	1 cut(s)	283
SfcI	CTRYAG	1 cut(s)	154
Sse9I	AATT	5 cut(s)	72, 102, 169, 235, 353
SsiI	CCGC	1 cut(s)	138
SspMI	CTAG	1 cut(s)	272
TaaI	ACNGT	2 cut(s)	130, 182
TaiI	ACGT	1 cut(s)	49
TasI	AATT	5 cut(s)	72, 102, 169, 235, 353
TfiI	GAWTC	1 cut(s)	317
Tru1I	TTAA	2 cut(s)	177, 358
Tru9I	TTAA	2 cut(s)	177, 358
TscAI	CASTG	1 cut(s)	187
TseFI	GTSAC	2 cut(s)	29, 124
TseI	GCWGC	2 cut(s)	275, 296
Tsp45I	GTSAC	2 cut(s)	29, 124
TspDTI	ATGAA	1 cut(s)	302
TspRI	CASTG	1 cut(s)	187
XapI	RAATTY	3 cut(s)	72, 235, 353
XspI	CTAG	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.