Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0005225

Physical Location & Seq

Genomic Coordinates Forward (+)

24497664 .. 24498082

Gene Structure 419 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGAAACGAGTCCCGCCAGAGGTGATCGAGTCGATTCGGAAAAACAAGGTGTGCTTGAAGGGCGGCTGCGACCTATACGCTTCGCTAGTAAACTGCTTCAACCTACCCAGCCTCCCCACCCGCCACAAGAACGTGGACATTGTCGTAATTAGAGAGAACACCGAGGGCGAATACGCCAGGCTCGAGCATGAGGTCGTCCCTGGCGTCGTTGAGAGCCTCAAGGTGATCACCAAGTTCTGCTCGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006102 GO:0008150 GO:0008152 GO:0008270 GO:0009060 GO:0009987 GO:0015980 GO:0016999 GO:0017144 GO:0019752 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0046872 GO:0046914 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00020 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00020 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

83

Amino Acids

9.24

Weight (kDa)

7.67

Isoelectric Point (pI)

53.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Iso_dh	PF00180	16 - 76	9.6e-06	Isocitrate/isopropylmalate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0005225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17130 AT2G17130 AT4G35260
fragaria_vesca	FvH4_2g16520 FvH4_2g16520 FvH4_2g16520 FvH4_2g16520 FvH4_2g16520 FvH4_2g16520
malus_domestica	MD05G1133600.v1.1 MD10G1138600.v1.1
prunus_persica	Prupe.3G128300_v2.0.a1 Prupe.8G177400_v2.0.a1 Prupe.8G177400_v2.0.a1 Prupe.8G177400_v2.0.a1
pyrus_communis	pycom07g23620
rosa_chinensis	RchiOBHm_Chr6g0280541
rosa_laevigata	RLG00000013056
rosa_multiflora	Rmu_co8141332.1_g000001 Rmu_sc0005585.1_g000001 Rmu_sc0015818.1_g000005
rosa_roxburghii	Rroxscaffold_7G00188000
rosa_rugosa	Rorug06G0131900 Rorug06G0132000
rosa_samantha	Rh6AG244400 Rh6BG246800 Rh6CG248200 Rh6DG239600
rosa_wichuraiana	Rw6G021170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	14, 63, 121
AcyI	GRCGYC	1 cut(s)	204
AfiI	CCNNNNNNNGG	1 cut(s)	19
AgsI	TTSAA	2 cut(s)	58, 100
AjnI	CCWGG	2 cut(s)	176, 199
Ama87I	CYCGRG	1 cut(s)	182
ApeKI	GCWGC	1 cut(s)	66
AsuHPI	GGTGA	3 cut(s)	34, 220, 235
AvaI	CYCGRG	1 cut(s)	182
BbvI	GCAGC	1 cut(s)	53
BciT130I	CCWGG	2 cut(s)	178, 201
BclI	TGATCA	1 cut(s)	225
BfaI	CTAG	1 cut(s)	86
BisI	GCNGC	2 cut(s)	64, 67
BlsI	GCNGC	2 cut(s)	65, 68
Bme1390I	CCNGG	2 cut(s)	178, 201
BmeT110I	CYCGRG	1 cut(s)	182
BmrFI	CCNGG	2 cut(s)	178, 201
BpuEI	CTTGAG	1 cut(s)	203
BsaHI	GRCGYC	1 cut(s)	204
BsaJI	CCNNGG	2 cut(s)	162, 199
BsaXI	ACNNNNNCTCC	2 cut(s)	96, 126
Bsc4I	CCNNNNNNNGG	1 cut(s)	19
BseBI	CCWGG	2 cut(s)	178, 201
BseDI	CCNNGG	2 cut(s)	162, 199
BseLI	CCNNNNNNNGG	1 cut(s)	19
BseXI	GCAGC	1 cut(s)	53
BseYI	CCCAGC	1 cut(s)	107
BsiHKCI	CYCGRG	1 cut(s)	182
BslFI	GGGAC	1 cut(s)	182
BslI	CCNNNNNNNGG	1 cut(s)	19
BsmFI	GGGAC	1 cut(s)	182
BsoBI	CYCGRG	1 cut(s)	182
Bsp143I	GATC	2 cut(s)	24, 225
BspACI	CCGC	3 cut(s)	14, 63, 121
BssECI	CCNNGG	2 cut(s)	162, 199
BssMI	GATC	2 cut(s)	24, 225
BssNI	GRCGYC	1 cut(s)	204
Bst2UI	CCWGG	2 cut(s)	178, 201
BstACI	GRCGYC	1 cut(s)	204
BstKTI	GATC	2 cut(s)	27, 228
BstMBI	GATC	2 cut(s)	24, 225
BstMWI	GCNNNNNNNGC	1 cut(s)	60
BstNI	CCWGG	2 cut(s)	178, 201
BstSCI	CCNGG	2 cut(s)	176, 199
BstV1I	GCAGC	1 cut(s)	53
CseI	GACGC	1 cut(s)	193
CviAII	CATG	1 cut(s)	188
CviJI	RGCY	4 cut(s)	66, 111, 181, 216
CviKI_1	RGCY	4 cut(s)	66, 111, 181, 216
DpnI	GATC	2 cut(s)	26, 227
DpnII	GATC	2 cut(s)	24, 225
Eco88I	CYCGRG	1 cut(s)	182
EcoRII	CCWGG	2 cut(s)	176, 199
FaeI	CATG	1 cut(s)	191
FaiI	YATR	2 cut(s)	76, 189
FalI	AAGNNNNNCTT	2 cut(s)	38, 70
FaqI	GGGAC	1 cut(s)	182
FatI	CATG	1 cut(s)	187
FauI	CCCGC	2 cut(s)	21, 128
FbaI	TGATCA	1 cut(s)	225
Fnu4HI	GCNGC	2 cut(s)	64, 67
Fsp4HI	GCNGC	2 cut(s)	64, 67
FspBI	CTAG	1 cut(s)	86
GluI	GCNGC	2 cut(s)	64, 67
GsaI	CCCAGC	1 cut(s)	111
HgaI	GACGC	1 cut(s)	193
Hin1I	GRCGYC	1 cut(s)	204
Hin1II	CATG	1 cut(s)	191
HinfI	GANTC	3 cut(s)	9, 29, 34
HphI	GGTGA	3 cut(s)	34, 220, 235
Hpy166II	GTNNAC	2 cut(s)	91, 136
Hpy188I	TCNGA	2 cut(s)	39, 244
Hpy8I	GTNNAC	2 cut(s)	91, 136
Hpy99I	CGWCG	1 cut(s)	209
HpyAV	CCTTC	1 cut(s)	52
HpyCH4IV	ACGT	1 cut(s)	132
HpyF10VI	GCNNNNNNNGC	1 cut(s)	60
HpySE526I	ACGT	1 cut(s)	132
Hsp92I	GRCGYC	1 cut(s)	204
Hsp92II	CATG	1 cut(s)	191
Ksp22I	TGATCA	1 cut(s)	225
Kzo9I	GATC	2 cut(s)	24, 225
LpnPI	CCDG	6 cut(s)	30, 121, 163, 186, 190, 213
Lsp1109I	GCAGC	1 cut(s)	53
MaeI	CTAG	1 cut(s)	86
MaeII	ACGT	1 cut(s)	132
MalI	GATC	2 cut(s)	26, 227
MboI	GATC	2 cut(s)	24, 225
MluCI	AATT	1 cut(s)	147
MlyI	GAGTC	2 cut(s)	18, 38
MnlI	CCTC	5 cut(s)	13, 122, 157, 184, 227
MspR9I	CCNGG	2 cut(s)	178, 201
MvaI	CCWGG	2 cut(s)	178, 201
MwoI	GCNNNNNNNGC	1 cut(s)	60
NdeII	GATC	2 cut(s)	24, 225
NlaIII	CATG	1 cut(s)	191
PaeR7I	CTCGAG	1 cut(s)	182
PcsI	WCGNNNNNNNCGW	2 cut(s)	180, 201
PfeI	GAWTC	1 cut(s)	34
PflFI	GACNNNGTC	1 cut(s)	140
PkrI	GCNGC	2 cut(s)	65, 68
PleI	GAGTC	2 cut(s)	17, 37
PpsI	GAGTC	2 cut(s)	17, 37
Psp6I	CCWGG	2 cut(s)	176, 199
PspFI	CCCAGC	1 cut(s)	107
PspGI	CCWGG	2 cut(s)	176, 199
PspXI	VCTCGAGB	1 cut(s)	182
PsyI	GACNNNGTC	1 cut(s)	140
SatI	GCNGC	2 cut(s)	64, 67
Sau3AI	GATC	2 cut(s)	24, 225
SchI	GAGTC	2 cut(s)	18, 38
ScrFI	CCNGG	2 cut(s)	178, 201
SetI	ASST	7 cut(s)	24, 51, 75, 105, 135, 195, 225
Sfr274I	CTCGAG	1 cut(s)	182
SlaI	CTCGAG	1 cut(s)	182
SmlI	CTYRAG	2 cut(s)	182, 218
SmoI	CTYRAG	2 cut(s)	182, 218
Sse9I	AATT	1 cut(s)	147
SsiI	CCGC	3 cut(s)	14, 63, 121
SspMI	CTAG	1 cut(s)	86
StyD4I	CCNGG	2 cut(s)	176, 199
TaiI	ACGT	1 cut(s)	135
TaqI	TCGA	3 cut(s)	27, 32, 183
TasI	AATT	1 cut(s)	147
TauI	GCSGC	1 cut(s)	66
TfiI	GAWTC	1 cut(s)	34
TseI	GCWGC	1 cut(s)	66
TspDTI	ATGAA	1 cut(s)	17
Tth111I	GACNNNGTC	1 cut(s)	140
XhoI	CTCGAG	1 cut(s)	182
XspI	CTAG	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.