pycom08g01810

Belongs to the peptidase C1 family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Forward (+)
1345699 .. 1348186
2488 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1335 bp
ATGAACCCCCCCGTCTTTCTCTTTCTCCTCCCAACTCTCCTCCTCCTCTCCCGCACCTGCCTCTCTTCGCCGCCGCAAACCGCCGCCTCCGAGCTCTTCGAAGCTTGGTGCAAACAGTATGGCAAGTCCTACCCCTCACCGCAAGAAAAGCTCCACAGGCTCAGTGTCTTCGAGGGCAATCTCAACTTTGTCACCCGACACAACGAAATGGGGAATTCTTCTTATACCCTTTCTCTCAATGCGTTTTCTGATCTCACCCACAGCGAGTTCAAGGCCTCCCGATTAGGCTTCTCGCCCTCGTTCATCGGTCTTAAGCGTGAACCGGATAGAAAACCCGGTTTATTGGCTCGTGATGTTCCTTCTTCGATTGATTGGAGGGAGGAAGGGGCGGTGACGAAGGTTAAGGATCAAGGGAGTTGTGGTGCTTGTTGGGCATTCTCAACTACTGGTGCCATCGAAGGTATCAACAAAATCGTCACAGGATCACTTCTCAGCCTTTCCGAACAAGAGCTGATTGATTGCGACAGAGTTTATCCAAACAGCGGCTGCAGTGGTGGACTTATGGACGATGCATTCGAATTTGTCATAGAAAACAATGGGGTCGACACTGAGGAGGATTACCCGTATAAAGGTTTGGATGGCACCTGCAATAAGAAAAAGTTGAAGAGGCATGCTGTGACCATAGATGATTATACTGATGTGCCCCCAAATGATGAGGAACAACTACTACAAGCTGTGGCAAATCAGCCTGTGAGCGTCGGCATATGTGGCAGCGACATTGCATTTCAGTTGTACTCGAAGGGAATTTTCACTGGTCCATGTTCGAATTCTTTGGATCACGCTGTTCTAATTGTAGGTTATGGTTCGGAAAATGGGGTGGACTATTGGATTGTGAAGAACTCATGGGGAAAAAGTTGGGGAATGAATGGCTACATCCACATGCTACGCGATCATAGCAATTCCCAAGGGGTCTGTGGCATCAACAGTTTAGCTTCATATCCCATAAAGACCGGGCAAAACCCTCCTCTTCCCCCGCCTTCTCCTCCCCCAGGTCCAACCAAATGCGACCTCTTTACGCACTGCGCAGCAGGGGAAACCTGCTGTTGTGCCAAGATGTTTATTGGAATATGCTTTGCTTGGAGATGCTGTGAGTTGAACTCCGCTGTTTGTTGCAAGGATAACAGTCACTGTTGTCCCCATGATTATCCCATCTGTGACACAGAAAGGGCGCTCTGCCTCAAGAGTAGCGAACCATCAACGCAATCCCAGGTCACTTCGAACGTAACAACAAAAGCGCTTATGAGCAGAAGCGTTTTGAGGAAGTCGAGCTGGTAA

Protein Analysis

445

Amino Acids

48.56

Weight (kDa)

5.73

Isoelectric Point (pI)

40.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 33 - 90 4.9e-21 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 119 - 335 6.6e-84 Papain family cysteine protease
Granulin PF00396 366 - 413 8.2e-09 Granulin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016666)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09850
fragaria_vesca FvH4_2g38850
malus_domestica MD08G1023300.v1.1
prunus_persica Prupe.1G372500_v2.0.a1
pyrus_communis pycom08g01810
rosa_chinensis RchiOBHm_Chr6g0301951
rosa_laevigata RLG00000011206
rosa_multiflora Rmu_sc0000407.1_g000001
rosa_roxburghii Rroxscaffold_7G00166250
rosa_rugosa Rorug06G0310500
rosa_samantha Rh6AG422900 Rh6BG429700 Rh6CG436100
rosa_wichuraiana Rw6G036630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 65, 653
Acc16I TGCGCA 1 cut(s) 1084
Acc36I ACCTGC 3 cut(s) 65, 653, 1106
AccB1I GGYRCC 2 cut(s) 449, 641
AccI GTMKAC 1 cut(s) 603
AccII CGCG 1 cut(s) 948
AclWI GGATC 3 cut(s) 414, 490, 843
AcsI RAATTY 4 cut(s) 214, 578, 804, 826
AfaI GTAC 1 cut(s) 794
AfeI AGCGCT 1 cut(s) 1296
AfiI CCNNNNNNNGG 3 cut(s) 542, 629, 1049
AflII CTTAAG 1 cut(s) 311
AgsI TTSAA 3 cut(s) 271, 664, 1156
AjnI CCWGG 2 cut(s) 1048, 1266
AluBI AGCT 7 cut(s) 94, 104, 151, 511, 734, 992, 1329
AluI AGCT 7 cut(s) 94, 104, 151, 511, 734, 992, 1329
Alw21I GWGCWC 1 cut(s) 96
AlwI GGATC 3 cut(s) 414, 490, 843
AlwNI CAGNNNCTG 2 cut(s) 546, 1188
Aor51HI AGCGCT 1 cut(s) 1296
AoxI GGCC 1 cut(s) 273
ApeKI GCWGC 3 cut(s) 546, 771, 1085
ApoI RAATTY 4 cut(s) 214, 578, 804, 826
ArsI GACNNNNNNTTYG 2 cut(s) 557, 589
AspLEI GCGC 3 cut(s) 1085, 1231, 1297
AspS9I GGNCC 2 cut(s) 815, 1052
AsuC2I CCSGG 2 cut(s) 336, 1012
AsuHPI GGTGA 4 cut(s) 129, 184, 247, 403
AsuII TTCGAA 4 cut(s) 99, 576, 824, 1277
AvaII GGWCC 2 cut(s) 815, 1052
BaeGI GKGCMC 1 cut(s) 705
BanI GGYRCC 2 cut(s) 449, 641
BanII GRGCYC 1 cut(s) 96
BauI CACGAG 1 cut(s) 348
BbsI GAAGAC 1 cut(s) 160
Bbv12I GWGCWC 1 cut(s) 96
BbvI GCAGC 3 cut(s) 533, 783, 1097
BccI CCATC 4 cut(s) 461, 632, 1217, 1261
BciT130I CCWGG 2 cut(s) 1050, 1268
BcnI CCSGG 2 cut(s) 336, 1012
BfmI CTRYAG 1 cut(s) 547
BfoI RGCGCY 2 cut(s) 1232, 1298
BfrI CTTAAG 1 cut(s) 311
BfuAI ACCTGC 3 cut(s) 65, 653, 1106
BisI GCNGC 7 cut(s) 71, 74, 84, 544, 547, 772, 1086
BlsI GCNGC 7 cut(s) 72, 75, 85, 545, 548, 773, 1087
Bme1390I CCNGG 4 cut(s) 336, 1012, 1050, 1268
Bme18I GGWCC 2 cut(s) 815, 1052
BmgT120I GGNCC 2 cut(s) 815, 1052
BmiI GGNNCC 2 cut(s) 451, 643
BmrFI CCNGG 4 cut(s) 336, 1012, 1050, 1268
BmsI GCATC 3 cut(s) 559, 987, 1133
BpiI GAAGAC 1 cut(s) 160
BplI GAGNNNNNCTC 2 cut(s) 1142, 1174
Bpu14I TTCGAA 4 cut(s) 99, 576, 824, 1277
BpuEI CTTGAG 1 cut(s) 1223
BpuMI CCSGG 2 cut(s) 336, 1012
BsaJI CCNNGG 3 cut(s) 964, 1048, 1266
BsaWI WCCGGW 1 cut(s) 322
BsaXI ACNNNNNCTCC 4 cut(s) 406, 436, 1132, 1162
Bsc4I CCNNNNNNNGG 3 cut(s) 542, 629, 1049
Bse1I ACTGG 2 cut(s) 451, 817
Bse3DI GCAATG 1 cut(s) 777
BseBI CCWGG 2 cut(s) 1050, 1268
BseDI CCNNGG 3 cut(s) 964, 1048, 1266
BseGI GGATG 2 cut(s) 643, 933
BseLI CCNNNNNNNGG 3 cut(s) 542, 629, 1049
BseMI GCAATG 1 cut(s) 777
BseMII CTCAG 3 cut(s) 175, 505, 600
BseNI ACTGG 2 cut(s) 451, 817
BseRI GAGGAG 7 cut(s) 17, 29, 32, 35, 626, 1014, 1032
BseSI GKGCMC 1 cut(s) 705
BseXI GCAGC 3 cut(s) 533, 783, 1097
Bsh1236I CGCG 1 cut(s) 948
BshFI GGCC 1 cut(s) 275
BshNI GGYRCC 2 cut(s) 449, 641
BsiHKAI GWGCWC 1 cut(s) 96
BsiSI CCGG 3 cut(s) 323, 336, 1011
BslFI GGGAC 1 cut(s) 1179
BslI CCNNNNNNNGG 3 cut(s) 542, 629, 1049
BsmFI GGGAC 1 cut(s) 1179
BsmI GAATGC 2 cut(s) 434, 572
BsnI GGCC 1 cut(s) 275
Bsp119I TTCGAA 4 cut(s) 99, 576, 824, 1277
Bsp1286I GDGCHC 2 cut(s) 96, 705
Bsp143I GATC 5 cut(s) 250, 406, 482, 835, 949
BspANI GGCC 1 cut(s) 275
BspCNI CTCAG 3 cut(s) 174, 504, 601
BspFNI CGCG 1 cut(s) 948
BspLI GGNNCC 2 cut(s) 451, 643
BspMAI CTGCAG 1 cut(s) 551
BspMI ACCTGC 3 cut(s) 65, 653, 1106
BspPI GGATC 3 cut(s) 414, 490, 843
BspQI GCTCTTC 1 cut(s) 101
BspT104I TTCGAA 4 cut(s) 99, 576, 824, 1277
BspT107I GGYRCC 2 cut(s) 449, 641
BspTI CTTAAG 1 cut(s) 311
BsrDI GCAATG 1 cut(s) 777
BsrI ACTGG 2 cut(s) 451, 817
BssECI CCNNGG 3 cut(s) 964, 1048, 1266
BssMI GATC 5 cut(s) 250, 406, 482, 835, 949
BssSI CACGAG 1 cut(s) 348
BssT1I CCWWGG 1 cut(s) 964
Bst2BI CACGAG 1 cut(s) 348
Bst2UI CCWGG 2 cut(s) 1050, 1268
Bst4CI ACNGT 4 cut(s) 117, 986, 1184, 1190
Bst6I CTCTTC 4 cut(s) 70, 101, 659, 1032
BstAFI CTTAAG 1 cut(s) 311
BstBI TTCGAA 4 cut(s) 99, 576, 824, 1277
BstC8I GCNNGC 1 cut(s) 672
BstDEI CTNAG 3 cut(s) 161, 491, 609
BstENI CCTNNNNNAGG 1 cut(s) 1047
BstF5I GGATG 2 cut(s) 643, 933
BstFNI CGCG 1 cut(s) 948
BstH2I RGCGCY 2 cut(s) 1232, 1298
BstHHI GCGC 3 cut(s) 1085, 1231, 1297
BstKTI GATC 5 cut(s) 253, 409, 485, 838, 952
BstMBI GATC 5 cut(s) 250, 406, 482, 835, 949
BstMWI GCNNNNNNNGC 5 cut(s) 148, 157, 431, 768, 954
BstNI CCWGG 2 cut(s) 1050, 1268
BstNSI RCATGY 2 cut(s) 674, 943
BstSCI CCNGG 4 cut(s) 334, 1010, 1048, 1266
BstSFI CTRYAG 1 cut(s) 547
BstSLI GKGCMC 1 cut(s) 705
BstUI CGCG 1 cut(s) 948
BstV1I GCAGC 3 cut(s) 533, 783, 1097
BstV2I GAAGAC 1 cut(s) 160
BsuRI GGCC 1 cut(s) 275
BtsCI GGATG 2 cut(s) 643, 933
BtsI GCAGTG 2 cut(s) 556, 1078
BtsIMutI CAGTG 6 cut(s) 169, 556, 606, 810, 1078, 1186
BveI ACCTGC 3 cut(s) 65, 653, 1106
Cac8I GCNNGC 1 cut(s) 672
CaiI CAGNNNCTG 2 cut(s) 546, 1188
CfoI GCGC 3 cut(s) 1085, 1231, 1297
Cfr13I GGNCC 2 cut(s) 815, 1052
CseI GACGC 1 cut(s) 745
Csp6I GTAC 1 cut(s) 793
CviAII CATG 5 cut(s) 671, 819, 903, 940, 1199
CviQI GTAC 1 cut(s) 793
DdeI CTNAG 3 cut(s) 161, 491, 609
DpnI GATC 5 cut(s) 252, 408, 484, 837, 951
DpnII GATC 5 cut(s) 250, 406, 482, 835, 949
Eam1104I CTCTTC 4 cut(s) 70, 101, 659, 1032
EarI CTCTTC 4 cut(s) 70, 101, 659, 1032
Ecl136II GAGCTC 1 cut(s) 94
Eco130I CCWWGG 1 cut(s) 964
Eco147I AGGCCT 1 cut(s) 275
Eco24I GRGCYC 1 cut(s) 96
Eco47I GGWCC 2 cut(s) 815, 1052
Eco47III AGCGCT 1 cut(s) 1296
Eco53kI GAGCTC 1 cut(s) 94
EcoICRI GAGCTC 1 cut(s) 94
EcoNI CCTNNNNNAGG 1 cut(s) 1047
EcoRI GAATTC 2 cut(s) 214, 826
EcoRII CCWGG 2 cut(s) 1048, 1266
EcoT14I CCWWGG 1 cut(s) 964
EcoT22I ATGCAT 1 cut(s) 574
EcoT38I GRGCYC 1 cut(s) 96
ErhI CCWWGG 1 cut(s) 964
FaeI CATG 5 cut(s) 674, 822, 906, 943, 1202
FaqI GGGAC 1 cut(s) 1179
FatI CATG 5 cut(s) 670, 818, 902, 939, 1198
FauI CCCGC 2 cut(s) 59, 1041
FauNDI CATATG 1 cut(s) 764
FblI GTMKAC 1 cut(s) 603
Fnu4HI GCNGC 7 cut(s) 71, 74, 84, 544, 547, 772, 1086
FokI GGATG 2 cut(s) 650, 920
FriOI GRGCYC 1 cut(s) 96
Fsp4HI GCNGC 7 cut(s) 71, 74, 84, 544, 547, 772, 1086
FspI TGCGCA 1 cut(s) 1084
GlaI GCGC 3 cut(s) 1084, 1230, 1296
GluI GCNGC 7 cut(s) 71, 74, 84, 544, 547, 772, 1086
HaeII RGCGCY 2 cut(s) 1232, 1298
HaeIII GGCC 1 cut(s) 275
HapII CCGG 3 cut(s) 323, 336, 1011
HgaI GACGC 1 cut(s) 745
HhaI GCGC 3 cut(s) 1085, 1231, 1297
Hin1II CATG 5 cut(s) 674, 822, 906, 943, 1202
Hin6I GCGC 3 cut(s) 1083, 1229, 1295
HinP1I GCGC 3 cut(s) 1083, 1229, 1295
HincII GTYRAC 1 cut(s) 604
HindII GTYRAC 1 cut(s) 604
HindIII AAGCTT 1 cut(s) 102
HpaII CCGG 3 cut(s) 323, 336, 1011
HphI GGTGA 4 cut(s) 129, 184, 247, 403
Hpy166II GTNNAC 4 cut(s) 320, 557, 604, 880
Hpy188I TCNGA 4 cut(s) 91, 250, 502, 868
Hpy188III TCNNGA 3 cut(s) 279, 350, 1240
Hpy8I GTNNAC 4 cut(s) 320, 557, 604, 880
Hpy99I CGWCG 1 cut(s) 761
HpyAV CCTTC 6 cut(s) 369, 377, 391, 452, 793, 1047
HpyCH4III ACNGT 4 cut(s) 117, 986, 1184, 1190
HpyCH4IV ACGT 1 cut(s) 1281
HpyCH4V TGCA 6 cut(s) 111, 549, 572, 648, 782, 1173
HpyF10VI GCNNNNNNNGC 5 cut(s) 148, 157, 431, 768, 954
HpyF3I CTNAG 3 cut(s) 161, 491, 609
HpySE526I ACGT 1 cut(s) 1281
Hsp92II CATG 5 cut(s) 674, 822, 906, 943, 1202
HspAI GCGC 3 cut(s) 1083, 1229, 1295
Kzo9I GATC 5 cut(s) 250, 406, 482, 835, 949
LguI GCTCTTC 1 cut(s) 101
LmnI GCTCC 1 cut(s) 156
Lsp1109I GCAGC 3 cut(s) 533, 783, 1097
LweI GCATC 3 cut(s) 559, 987, 1133
MaeII ACGT 1 cut(s) 1281
MaeIII GTNAC 8 cut(s) 190, 391, 475, 676, 1184, 1214, 1270, 1282
MalI GATC 5 cut(s) 252, 408, 484, 837, 951
MboI GATC 5 cut(s) 250, 406, 482, 835, 949
MboII GAAGA 8 cut(s) 57, 88, 160, 210, 354, 676, 907, 1019
MhlI GDGCHC 2 cut(s) 96, 705
MluCI AATT 6 cut(s) 214, 578, 804, 826, 849, 958
MmeI TCCRAC 1 cut(s) 1079
Mph1103I ATGCAT 1 cut(s) 574
MseI TTAA 2 cut(s) 312, 402
MslI CAYNNNNRTG 1 cut(s) 938
MspA1I CMGCKG 2 cut(s) 543, 1163
MspCI CTTAAG 1 cut(s) 311
MspI CCGG 3 cut(s) 323, 336, 1011
MspR9I CCNGG 4 cut(s) 336, 1012, 1050, 1268
Mva1269I GAATGC 2 cut(s) 434, 572
MvaI CCWGG 2 cut(s) 1050, 1268
MvnI CGCG 1 cut(s) 948
MwoI GCNNNNNNNGC 5 cut(s) 148, 157, 431, 768, 954
NciI CCSGG 2 cut(s) 336, 1012
NdeI CATATG 1 cut(s) 764
NdeII GATC 5 cut(s) 250, 406, 482, 835, 949
NlaIII CATG 5 cut(s) 674, 822, 906, 943, 1202
NlaIV GGNNCC 2 cut(s) 451, 643
NmuCI GTSAC 7 cut(s) 190, 391, 475, 676, 1184, 1214, 1270
NsbI TGCGCA 1 cut(s) 1084
NsiI ATGCAT 1 cut(s) 574
NspI RCATGY 2 cut(s) 674, 943
NspV TTCGAA 4 cut(s) 99, 576, 824, 1277
PaeI GCATGC 1 cut(s) 674
PaqCI CACCTGC 2 cut(s) 65, 653
PceI AGGCCT 1 cut(s) 275
PciSI GCTCTTC 1 cut(s) 101
PcsI WCGNNNNNNNCGW 1 cut(s) 573
PctI GAATGC 2 cut(s) 434, 572
PkrI GCNGC 7 cut(s) 72, 75, 85, 545, 548, 773, 1087
Psp124BI GAGCTC 1 cut(s) 96
Psp6I CCWGG 2 cut(s) 1048, 1266
PspGI CCWGG 2 cut(s) 1048, 1266
PspN4I GGNNCC 2 cut(s) 451, 643
PspPI GGNCC 2 cut(s) 815, 1052
PsrI GAACNNNNNNTAC 2 cut(s) 711, 743
PstI CTGCAG 1 cut(s) 551
PstNI CAGNNNCTG 2 cut(s) 546, 1188
RsaI GTAC 1 cut(s) 794
RsaNI GTAC 1 cut(s) 793
RseI CAYNNNNRTG 1 cut(s) 938
SacI GAGCTC 1 cut(s) 96
SalI GTCGAC 1 cut(s) 602
SapI GCTCTTC 1 cut(s) 101
SaqAI TTAA 2 cut(s) 312, 402
SatI GCNGC 7 cut(s) 71, 74, 84, 544, 547, 772, 1086
Sau3AI GATC 5 cut(s) 250, 406, 482, 835, 949
Sau96I GGNCC 2 cut(s) 815, 1052
ScrFI CCNGG 4 cut(s) 336, 1012, 1050, 1268
SduI GDGCHC 2 cut(s) 96, 705
SfaNI GCATC 3 cut(s) 559, 987, 1133
SfcI CTRYAG 1 cut(s) 547
SfuI TTCGAA 4 cut(s) 99, 576, 824, 1277
SinI GGWCC 2 cut(s) 815, 1052
SmiMI CAYNNNNRTG 1 cut(s) 938
SmlI CTYRAG 2 cut(s) 311, 1238
SmoI CTYRAG 2 cut(s) 311, 1238
SphI GCATGC 1 cut(s) 674
Sse9I AATT 6 cut(s) 214, 578, 804, 826, 849, 958
SseBI AGGCCT 1 cut(s) 275
SstI GAGCTC 1 cut(s) 96
StuI AGGCCT 1 cut(s) 275
StyD4I CCNGG 4 cut(s) 334, 1010, 1048, 1266
StyI CCWWGG 1 cut(s) 964
TaaI ACNGT 4 cut(s) 117, 986, 1184, 1190
TaiI ACGT 1 cut(s) 1284
TaqII GACCGA 1 cut(s) 296
TasI AATT 6 cut(s) 214, 578, 804, 826, 849, 958
TatI WGTACW 1 cut(s) 792
TauI GCSGC 4 cut(s) 73, 76, 86, 546
Tru1I TTAA 2 cut(s) 312, 402
Tru9I TTAA 2 cut(s) 312, 402
TscAI CASTG 6 cut(s) 169, 556, 613, 817, 1085, 1193
TseFI GTSAC 7 cut(s) 190, 391, 475, 676, 1184, 1214, 1270
TseI GCWGC 3 cut(s) 546, 771, 1085
Tsp45I GTSAC 7 cut(s) 190, 391, 475, 676, 1184, 1214, 1270
TspDTI ATGAA 4 cut(s) 17, 292, 938, 984
TspRI CASTG 6 cut(s) 169, 556, 613, 817, 1085, 1193
Vha464I CTTAAG 1 cut(s) 311
VpaK11BI GGWCC 2 cut(s) 815, 1052
XagI CCTNNNNNAGG 1 cut(s) 1047
XapI RAATTY 4 cut(s) 214, 578, 804, 826
XceI RCATGY 2 cut(s) 674, 943
XcmI CCANNNNNNNNNTGG 1 cut(s) 971
XmiI GTMKAC 1 cut(s) 603
Zsp2I ATGCAT 1 cut(s) 574
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.