Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0015074

Physical Location & Seq

Genomic Coordinates Reverse (-)

2287353 .. 2288216

Gene Structure 864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGCGATTAAGCTCTATCTTCTTCTTTCTCTCTTCTCGTTAGGCAATGTAGTCCGCGCGACCCAATTCACACTCCAAAACCGTTGCAGTTACACGGTCTGGCCGGGAACTCTCTCCGGAAACGGCGCTGCAATTCTCGGAGGGGGCGGTTTCGCATTGGCCCCGGGTACATCGGTCCAGTTCACCGCCCCTCCCGGCTGGTCCGGCCGGTTCTGGGCACGAACTGGCTGCACCTTCGACGACTTGGGAAACGGAAAATGCGTCACTGGCGACTGCGGATCGCTAAAATGTGCCGGCGGTGGCGCGCCTCCCGTGACGTTGGCGGAGTTCACGATCGGGTCCAACCCGGGGGACAAGGACTTTTATGACATCAGCCTGGTGGACGGTTACAATGTGGGCATGGGATTGTGGGCCACCGGCGGAACCGGCGACTGCCAGTACGCTGGATGCGTGGCGGACTTGAACGGCCGCTGCCCGGCGGAGCTGCGGGTGATGGATGCGGGTTCGGGGGCGGTGGTGGCTTGCAGGAGCGCGTGCGCGGCGTTTAACACGCCAGAGTATTGCTGCACCGGGGAGCACGCGACGCCGCAGACTTGCTCGCCGACGCAGTACTCGGAGATGTTCAAGACGGCGTGCCCCACAGCGTACAGCTACGCCTATGACGACGCTTCGAGCACTTGTACCTGTTCCGGGTCGGACTACTTGATCACATTTTGCCCAAGCGGGTCATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009607 GO:0009615 GO:0009627 GO:0009628 GO:0009814 GO:0009889 GO:0009962 GO:0010035 GO:0010038 GO:0010224 GO:0019222 GO:0030312 GO:0031537 GO:0031540 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046686 GO:0048046 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0071944 GO:0080090 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thaumatin

Protein Analysis

245

Amino Acids

25.15

Weight (kDa)

4.6

Isoelectric Point (pI)

33.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thaumatin	PF00314	27 - 240	3e-81	Thaumatin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015074)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19320 AT1G75030 AT1G75040 AT1G75050
fragaria_vesca	FvH4_2g40300
malus_domestica	MD08G1036400.v1.1
prunus_persica	Prupe.1G383700_v2.0.a1
pyrus_communis	pycom08g02910
rosa_chinensis	RchiOBHm_Chr6g0300441
rosa_laevigata	RLG00000011337
rosa_multiflora	Rmu_co8384655.1_g000001 Rmu_sc0001670.1_g000005
rosa_roxburghii	Rroxscaffold_7G00167780
rosa_rugosa	Rorug06G0296100
rosa_samantha	Rh6DG409100
rosa_wichuraiana	Rw6G035760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	6 cut(s)	57, 59, 305, 533, 539, 581
AccIII	TCCGGA	1 cut(s)	116
AclWI	GGATC	1 cut(s)	286
AcoI	YGGCCR	3 cut(s)	101, 205, 466
AcyI	GRCGYC	1 cut(s)	584
AfaI	GTAC	5 cut(s)	169, 440, 611, 647, 682
AfiI	CCNNNNNNNGG	4 cut(s)	214, 348, 475, 690
AgsI	TTSAA	2 cut(s)	463, 625
AjnI	CCWGG	1 cut(s)	375
AluBI	AGCT	3 cut(s)	13, 484, 651
AluI	AGCT	3 cut(s)	13, 484, 651
Alw21I	GWGCWC	2 cut(s)	579, 677
AlwI	GGATC	1 cut(s)	286
Ama87I	CYCGRG	2 cut(s)	163, 346
Aor13HI	TCCGGA	1 cut(s)	116
AoxI	GGCC	5 cut(s)	101, 159, 205, 411, 466
ApeKI	GCWGC	5 cut(s)	128, 228, 471, 484, 564
AscI	GGCGCGCC	1 cut(s)	303
AspLEI	GCGC	6 cut(s)	59, 128, 305, 307, 533, 539
AspS9I	GGNCC	5 cut(s)	160, 175, 201, 339, 411
AsuC2I	CCSGG	9 cut(s)	105, 164, 165, 195, 347, 348, 476, 571, 691
AsuHPI	GGTGA	2 cut(s)	175, 502
AvaI	CYCGRG	2 cut(s)	163, 346
AvaII	GGWCC	3 cut(s)	175, 201, 339
BaeGI	GKGCMC	2 cut(s)	220, 638
BaeI	ACNNNNGTAYC	2 cut(s)	159, 192
Bbv12I	GWGCWC	2 cut(s)	579, 677
BbvI	GCAGC	5 cut(s)	115, 215, 458, 471, 551
BccI	CCATC	1 cut(s)	487
BceAI	ACGGC	3 cut(s)	139, 481, 645
BcgI	CGANNNNNNTGC	2 cut(s)	210, 244
BciT130I	CCWGG	1 cut(s)	377
BclI	TGATCA	1 cut(s)	705
BcnI	CCSGG	9 cut(s)	105, 164, 165, 195, 347, 348, 476, 571, 691
BfoI	RGCGCY	1 cut(s)	129
BisI	GCNGC	8 cut(s)	129, 229, 469, 472, 485, 540, 565, 587
BlsI	GCNGC	8 cut(s)	130, 230, 470, 473, 486, 541, 566, 588
BmcAI	AGTACT	1 cut(s)	611
Bme18I	GGWCC	3 cut(s)	175, 201, 339
BmeT110I	CYCGRG	2 cut(s)	163, 346
BmgT120I	GGNCC	5 cut(s)	160, 175, 201, 339, 411
BmiI	GGNNCC	3 cut(s)	162, 340, 424
BmsI	GCATC	2 cut(s)	437, 487
BpuMI	CCSGG	9 cut(s)	105, 164, 165, 195, 347, 348, 476, 571, 691
BsaHI	GRCGYC	1 cut(s)	584
BsaJI	CCNNGG	5 cut(s)	162, 163, 346, 347, 570
BsaWI	WCCGGW	1 cut(s)	116
BsaXI	ACNNNNNCTCC	2 cut(s)	175, 205
Bsc4I	CCNNNNNNNGG	4 cut(s)	214, 348, 475, 690
Bse118I	RCCGGY	4 cut(s)	207, 293, 416, 425
Bse1I	ACTGG	4 cut(s)	178, 229, 271, 436
Bse3DI	GCAATG	1 cut(s)	52
BseAI	TCCGGA	1 cut(s)	116
BseBI	CCWGG	1 cut(s)	377
BseDI	CCNNGG	5 cut(s)	162, 163, 346, 347, 570
BseGI	GGATG	2 cut(s)	452, 502
BseLI	CCNNNNNNNGG	4 cut(s)	214, 348, 475, 690
BseMI	GCAATG	1 cut(s)	52
BseNI	ACTGG	4 cut(s)	178, 229, 271, 436
BsePI	GCGCGC	1 cut(s)	303
BseSI	GKGCMC	2 cut(s)	220, 638
BseX3I	CGGCCG	2 cut(s)	205, 466
BseXI	GCAGC	5 cut(s)	115, 215, 458, 471, 551
BsgI	GTGCAG	2 cut(s)	214, 550
Bsh1236I	CGCG	6 cut(s)	57, 59, 305, 533, 539, 581
Bsh1285I	CGRYCG	3 cut(s)	208, 336, 469
BshFI	GGCC	5 cut(s)	103, 161, 207, 413, 468
BsiEI	CGRYCG	3 cut(s)	208, 336, 469
BsiHKAI	GWGCWC	2 cut(s)	579, 677
BsiHKCI	CYCGRG	2 cut(s)	163, 346
BslFI	GGGAC	1 cut(s)	365
BslI	CCNNNNNNNGG	4 cut(s)	214, 348, 475, 690
BsmFI	GGGAC	1 cut(s)	365
BsnI	GGCC	5 cut(s)	103, 161, 207, 413, 468
BsoBI	CYCGRG	2 cut(s)	163, 346
Bsp1286I	GDGCHC	4 cut(s)	220, 579, 638, 677
Bsp13I	TCCGGA	1 cut(s)	116
Bsp143I	GATC	3 cut(s)	278, 333, 705
BspANI	GGCC	5 cut(s)	103, 161, 207, 413, 468
BspEI	TCCGGA	1 cut(s)	116
BspFNI	CGCG	6 cut(s)	57, 59, 305, 533, 539, 581
BspLI	GGNNCC	3 cut(s)	162, 340, 424
BspPI	GGATC	1 cut(s)	286
BsrDI	GCAATG	1 cut(s)	52
BsrFI	RCCGGY	4 cut(s)	207, 293, 416, 425
BsrI	ACTGG	4 cut(s)	178, 229, 271, 436
BssAI	RCCGGY	4 cut(s)	207, 293, 416, 425
BssECI	CCNNGG	5 cut(s)	162, 163, 346, 347, 570
BssHII	GCGCGC	1 cut(s)	303
BssMI	GATC	3 cut(s)	278, 333, 705
BssNI	GRCGYC	1 cut(s)	584
Bst2UI	CCWGG	1 cut(s)	377
Bst4CI	ACNGT	3 cut(s)	83, 97, 386
Bst6I	CTCTTC	1 cut(s)	38
BstACI	GRCGYC	1 cut(s)	584
BstC8I	GCNNGC	7 cut(s)	295, 305, 523, 535, 579, 599, 634
BstF5I	GGATG	2 cut(s)	452, 502
BstFNI	CGCG	6 cut(s)	57, 59, 305, 533, 539, 581
BstH2I	RGCGCY	1 cut(s)	129
BstHHI	GCGC	6 cut(s)	59, 128, 305, 307, 533, 539
BstKTI	GATC	3 cut(s)	281, 336, 708
BstMBI	GATC	3 cut(s)	278, 333, 705
BstMCI	CGRYCG	3 cut(s)	208, 336, 469
BstMWI	GCNNNNNNNGC	6 cut(s)	204, 267, 426, 518, 539, 583
BstNI	CCWGG	1 cut(s)	377
BstSLI	GKGCMC	2 cut(s)	220, 638
BstUI	CGCG	6 cut(s)	57, 59, 305, 533, 539, 581
BstV1I	GCAGC	5 cut(s)	115, 215, 458, 471, 551
BstXI	CCANNNNNNTGG	1 cut(s)	443
BstZI	CGGCCG	2 cut(s)	205, 466
BsuRI	GGCC	5 cut(s)	103, 161, 207, 413, 468
BtsCI	GGATG	2 cut(s)	452, 502
BtsIMutI	CAGTG	1 cut(s)	264
Cac8I	GCNNGC	7 cut(s)	295, 305, 523, 535, 579, 599, 634
CfoI	GCGC	6 cut(s)	59, 128, 305, 307, 533, 539
Cfr10I	RCCGGY	4 cut(s)	207, 293, 416, 425
Cfr13I	GGNCC	5 cut(s)	160, 175, 201, 339, 411
Cfr9I	CCCGGG	2 cut(s)	163, 346
CseI	GACGC	4 cut(s)	250, 592, 613, 674
Csp6I	GTAC	5 cut(s)	168, 439, 610, 646, 681
CviAII	CATG	1 cut(s)	400
CviQI	GTAC	5 cut(s)	168, 439, 610, 646, 681
DpnI	GATC	3 cut(s)	280, 335, 707
DpnII	GATC	3 cut(s)	278, 333, 705
EaeI	YGGCCR	3 cut(s)	101, 205, 466
EagI	CGGCCG	2 cut(s)	205, 466
Eam1104I	CTCTTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	38
EciI	GGCGGA	4 cut(s)	338, 435, 470, 494
EclXI	CGGCCG	2 cut(s)	205, 466
Eco47I	GGWCC	3 cut(s)	175, 201, 339
Eco52I	CGGCCG	2 cut(s)	205, 466
Eco88I	CYCGRG	2 cut(s)	163, 346
EcoRII	CCWGG	1 cut(s)	375
FaeI	CATG	1 cut(s)	403
FaiI	YATR	4 cut(s)	366, 401, 660, 733
FaqI	GGGAC	1 cut(s)	365
FatI	CATG	1 cut(s)	399
FauI	CCCGC	3 cut(s)	480, 493, 716
FbaI	TGATCA	1 cut(s)	705
Fnu4HI	GCNGC	8 cut(s)	129, 229, 469, 472, 485, 540, 565, 587
FokI	GGATG	2 cut(s)	459, 509
Fsp4HI	GCNGC	8 cut(s)	129, 229, 469, 472, 485, 540, 565, 587
GlaI	GCGC	6 cut(s)	58, 127, 304, 306, 532, 538
GluI	GCNGC	8 cut(s)	129, 229, 469, 472, 485, 540, 565, 587
HaeII	RGCGCY	1 cut(s)	129
HaeIII	GGCC	5 cut(s)	103, 161, 207, 413, 468
HgaI	GACGC	4 cut(s)	250, 592, 613, 674
HhaI	GCGC	6 cut(s)	59, 128, 305, 307, 533, 539
Hin1I	GRCGYC	1 cut(s)	584
Hin1II	CATG	1 cut(s)	403
Hin6I	GCGC	6 cut(s)	57, 126, 303, 305, 531, 537
HinP1I	GCGC	6 cut(s)	57, 126, 303, 305, 531, 537
HphI	GGTGA	2 cut(s)	175, 502
Hpy166II	GTNNAC	3 cut(s)	183, 330, 382
Hpy188I	TCNGA	3 cut(s)	140, 616, 697
Hpy188III	TCNNGA	3 cut(s)	117, 331, 625
Hpy8I	GTNNAC	3 cut(s)	183, 330, 382
Hpy99I	CGWCG	4 cut(s)	242, 586, 607, 668
HpyAV	CCTTC	1 cut(s)	244
HpyCH4III	ACNGT	3 cut(s)	83, 97, 386
HpyCH4IV	ACGT	1 cut(s)	317
HpyCH4V	TGCA	5 cut(s)	87, 131, 231, 525, 567
HpyF10VI	GCNNNNNNNGC	6 cut(s)	204, 267, 426, 518, 539, 583
HpySE526I	ACGT	1 cut(s)	317
Hsp92I	GRCGYC	1 cut(s)	584
Hsp92II	CATG	1 cut(s)	403
HspAI	GCGC	6 cut(s)	57, 126, 303, 305, 531, 537
Kpn2I	TCCGGA	1 cut(s)	116
KroI	GCCGGC	1 cut(s)	293
KroNI	GCCGGC	1 cut(s)	295
Ksp22I	TGATCA	1 cut(s)	705
Kzo9I	GATC	3 cut(s)	278, 333, 705
LmnI	GCTCC	3 cut(s)	481, 528, 574
Lsp1109I	GCAGC	5 cut(s)	115, 215, 458, 471, 551
LweI	GCATC	2 cut(s)	437, 487
MaeII	ACGT	1 cut(s)	317
MaeIII	GTNAC	4 cut(s)	89, 262, 313, 386
MalI	GATC	3 cut(s)	280, 335, 707
MboI	GATC	3 cut(s)	278, 333, 705
MboII	GAAGA	3 cut(s)	11, 14, 25
MhlI	GDGCHC	4 cut(s)	220, 579, 638, 677
MluCI	AATT	2 cut(s)	65, 132
MmeI	TCCRAC	2 cut(s)	366, 675
MnlI	CCTC	3 cut(s)	134, 201, 318
MroI	TCCGGA	1 cut(s)	116
MroNI	GCCGGC	1 cut(s)	293
MseI	TTAA	2 cut(s)	9, 546
MspA1I	CMGCKG	1 cut(s)	471
MvaI	CCWGG	1 cut(s)	377
MvnI	CGCG	6 cut(s)	57, 59, 305, 533, 539, 581
MwoI	GCNNNNNNNGC	6 cut(s)	204, 267, 426, 518, 539, 583
NaeI	GCCGGC	1 cut(s)	295
NciI	CCSGG	9 cut(s)	105, 164, 165, 195, 347, 348, 476, 571, 691
NdeII	GATC	3 cut(s)	278, 333, 705
NgoMIV	GCCGGC	1 cut(s)	293
NlaIII	CATG	1 cut(s)	403
NlaIV	GGNNCC	3 cut(s)	162, 340, 424
NmuCI	GTSAC	2 cut(s)	262, 313
PalAI	GGCGCGCC	1 cut(s)	303
PauI	GCGCGC	1 cut(s)	303
PcsI	WCGNNNNNNNCGW	3 cut(s)	258, 447, 660
PdiI	GCCGGC	1 cut(s)	295
PkrI	GCNGC	8 cut(s)	130, 230, 470, 473, 486, 541, 566, 588
Ple19I	CGATCG	1 cut(s)	336
Psp6I	CCWGG	1 cut(s)	375
PspGI	CCWGG	1 cut(s)	375
PspN4I	GGNNCC	3 cut(s)	162, 340, 424
PspPI	GGNCC	5 cut(s)	160, 175, 201, 339, 411
PteI	GCGCGC	1 cut(s)	303
PvuI	CGATCG	1 cut(s)	336
RsaI	GTAC	5 cut(s)	169, 440, 611, 647, 682
RsaNI	GTAC	5 cut(s)	168, 439, 610, 646, 681
SaqAI	TTAA	2 cut(s)	9, 546
SatI	GCNGC	8 cut(s)	129, 229, 469, 472, 485, 540, 565, 587
Sau3AI	GATC	3 cut(s)	278, 333, 705
Sau96I	GGNCC	5 cut(s)	160, 175, 201, 339, 411
ScaI	AGTACT	1 cut(s)	611
SduI	GDGCHC	4 cut(s)	220, 579, 638, 677
SetI	ASST	6 cut(s)	15, 236, 320, 486, 653, 686
SfaNI	GCATC	2 cut(s)	437, 487
SgrAI	CRCCGGYG	1 cut(s)	416
SgsI	GGCGCGCC	1 cut(s)	303
SinI	GGWCC	3 cut(s)	175, 201, 339
SmaI	CCCGGG	2 cut(s)	165, 348
Sse9I	AATT	2 cut(s)	65, 132
TaaI	ACNGT	3 cut(s)	83, 97, 386
TaiI	ACGT	1 cut(s)	320
TaqI	TCGA	2 cut(s)	237, 671
TaqII	GACCGA	1 cut(s)	163
TasI	AATT	2 cut(s)	65, 132
TatI	WGTACW	1 cut(s)	609
TauI	GCSGC	3 cut(s)	471, 542, 589
Tru1I	TTAA	2 cut(s)	9, 546
Tru9I	TTAA	2 cut(s)	9, 546
TscAI	CASTG	1 cut(s)	271
TseFI	GTSAC	2 cut(s)	262, 313
TseI	GCWGC	5 cut(s)	128, 228, 471, 484, 564
Tsp45I	GTSAC	2 cut(s)	262, 313
TspGWI	ACGGA	1 cut(s)	267
TspMI	CCCGGG	2 cut(s)	163, 346
TspRI	CASTG	1 cut(s)	271
VpaK11BI	GGWCC	3 cut(s)	175, 201, 339
XmaI	CCCGGG	2 cut(s)	163, 346
ZrmI	AGTACT	1 cut(s)	611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.