Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0004323

Physical Location & Seq

Genomic Coordinates Reverse (-)

2789790 .. 2791042

Gene Structure 1253 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g03580.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGCGTTATTGGTACCCATTTACTGAGGAAGCAGTTCAGCAAATTAAGAAAGACAGAATAACCAGGCTTGTTGTCCTGCCTCTGTACCCTCAATTCTCTATCTCTACAACTGGATCAAGCGTTTCTGTGCTCCAGGATATTTTCAGGAAAGATGCGTACCTATCAAGGATGCCTGTTTCTATTATAAACTCGTGGTATCAACGTGAAGGCTATCTTAAGTCAATGGCCGACTTGATTTCCAAAGAGCTAGAAAGTTTTTCTGAGCCTGCAGAGGTCATGATATTCTTCAGTGCCCACGGAGTACCGCTCAGTTATGTGGAGGATGCCGGAGATCCTTACAAAGATCAAATGGAGGAGTGCATCTTCTTAATAATGAAAGAGCTGAAATCTAGAGGAATTAACAATGAACATACCCTTGCTTACCAGATCCGAGTTGGTCCTGTGCAATGGCTAAAGCCCTACACTGATGAAGTTCTTGTTGAGCTTGGCCAGAAAGGCGTGAAAAGTCTCCTAGCTGTTCCACCAGCTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0016829 GO:0018130 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046483 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Ferrochelatase

Protein Analysis

178

Amino Acids

20.33

Weight (kDa)

5.48

Isoelectric Point (pI)

34.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004323)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26030 AT5G26030
fragaria_vesca	FvH4_2g32120 FvH4_2g32120
malus_domestica	MD08G1044400.v1.1 MD15G1061700.v1.1
prunus_persica	Prupe.1G414400_v2.0.a1
pyrus_communis	pycom08g03580 pycom15g05760
rosa_chinensis	RchiOBHm_Chr6g0272541 RchiOBHm_Chr6g0310621
rosa_laevigata	RLG00000010472 RLG00000013668
rosa_multiflora	Rmu_sc0003080.1_g000019 Rmu_sc0005386.1_g000002 Rmu_sc0016392.1_g000002 Rmu_sc0033505.1_g000001
rosa_roxburghii	Rroxscaffold_7G00158420 Rroxscaffold_7G00196170
rosa_rugosa	Rorug06G0069800 Rorug06G0381500 Rorug06G0381600
rosa_samantha	Rh6AG186200 Rh6AG495500 Rh6BG189300 Rh6BG505000 Rh6CG187100 Rh6CG510600 Rh6DG178800 Rh6DG496400
rosa_wichuraiana	Rw6G016040 Rw6G043090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	185
Acc65I	GGTACC	1 cut(s)	12
AccB1I	GGYRCC	1 cut(s)	12
AccBSI	CCGCTC	1 cut(s)	307
AciI	CCGC	1 cut(s)	305
AclWI	GGATC	3 cut(s)	121, 326, 421
AcoI	YGGCCR	2 cut(s)	225, 487
AcuI	CTGAAG	1 cut(s)	271
AfaI	GTAC	4 cut(s)	14, 86, 158, 303
AflII	CTTAAG	1 cut(s)	215
AjnI	CCWGG	2 cut(s)	62, 132
AluBI	AGCT	5 cut(s)	247, 382, 484, 515, 527
AluI	AGCT	5 cut(s)	247, 382, 484, 515, 527
Alw21I	GWGCWC	1 cut(s)	132
Alw26I	GTCTC	1 cut(s)	512
AlwI	GGATC	3 cut(s)	121, 326, 421
AoxI	GGCC	2 cut(s)	225, 487
Asp700I	GAANNNNTTC	1 cut(s)	33
Asp718I	GGTACC	1 cut(s)	12
AspS9I	GGNCC	1 cut(s)	437
AvaII	GGWCC	1 cut(s)	437
BaeGI	GKGCMC	1 cut(s)	295
BalI	TGGCCA	1 cut(s)	489
BanI	GGYRCC	1 cut(s)	12
BauI	CACGAG	1 cut(s)	190
Bbv12I	GWGCWC	1 cut(s)	132
BciT130I	CCWGG	2 cut(s)	64, 134
BcoDI	GTCTC	1 cut(s)	512
BfaI	CTAG	3 cut(s)	248, 390, 512
BfmI	CTRYAG	1 cut(s)	267
BfrI	CTTAAG	1 cut(s)	215
BglI	GCCNNNNNGGC	1 cut(s)	495
Bme1390I	CCNGG	2 cut(s)	64, 134
Bme18I	GGWCC	1 cut(s)	437
BmgT120I	GGNCC	1 cut(s)	437
BmiI	GGNNCC	1 cut(s)	14
BmrFI	CCNGG	2 cut(s)	64, 134
BmsI	GCATC	4 cut(s)	142, 159, 313, 369
BplI	GAGNNNNNCTC	2 cut(s)	291, 323
BpmI	CTGGAG	1 cut(s)	116
BsaJI	CCNNGG	1 cut(s)	295
Bse1I	ACTGG	1 cut(s)	115
Bse3DI	GCAATG	1 cut(s)	452
BseBI	CCWGG	2 cut(s)	64, 134
BseDI	CCNNGG	1 cut(s)	295
BseGI	GGATG	2 cut(s)	174, 328
BseMI	GCAATG	1 cut(s)	452
BseMII	CTCAG	3 cut(s)	15, 252, 322
BseNI	ACTGG	1 cut(s)	115
BseRI	GAGGAG	1 cut(s)	368
BseSI	GKGCMC	1 cut(s)	295
BshFI	GGCC	2 cut(s)	227, 489
BshNI	GGYRCC	1 cut(s)	12
BsiHKAI	GWGCWC	1 cut(s)	132
BsiSI	CCGG	1 cut(s)	327
BsmAI	GTCTC	1 cut(s)	512
BsnI	GGCC	2 cut(s)	227, 489
Bsp1286I	GDGCHC	2 cut(s)	132, 295
Bsp143I	GATC	4 cut(s)	113, 331, 343, 426
BspACI	CCGC	1 cut(s)	305
BspANI	GGCC	2 cut(s)	227, 489
BspCNI	CTCAG	3 cut(s)	16, 253, 321
BspHI	TCATGA	1 cut(s)	276
BspLI	GGNNCC	1 cut(s)	14
BspMAI	CTGCAG	1 cut(s)	271
BspPI	GGATC	3 cut(s)	121, 326, 421
BspT107I	GGYRCC	1 cut(s)	12
BspTI	CTTAAG	1 cut(s)	215
BsrBI	CCGCTC	1 cut(s)	307
BsrDI	GCAATG	1 cut(s)	452
BsrI	ACTGG	1 cut(s)	115
BssECI	CCNNGG	1 cut(s)	295
BssMI	GATC	4 cut(s)	113, 331, 343, 426
BssSI	CACGAG	1 cut(s)	190
Bst2BI	CACGAG	1 cut(s)	190
Bst2UI	CCWGG	2 cut(s)	64, 134
BstAFI	CTTAAG	1 cut(s)	215
BstC8I	GCNNGC	1 cut(s)	267
BstDEI	CTNAG	3 cut(s)	24, 261, 308
BstDSI	CCRYGG	1 cut(s)	295
BstF5I	GGATG	2 cut(s)	174, 328
BstKTI	GATC	4 cut(s)	116, 334, 346, 429
BstMAI	GTCTC	1 cut(s)	512
BstMBI	GATC	4 cut(s)	113, 331, 343, 426
BstMWI	GCNNNNNNNGC	1 cut(s)	495
BstNI	CCWGG	2 cut(s)	64, 134
BstSCI	CCNGG	2 cut(s)	62, 132
BstSFI	CTRYAG	1 cut(s)	267
BstSLI	GKGCMC	1 cut(s)	295
BstX2I	RGATCY	2 cut(s)	331, 426
BstYI	RGATCY	2 cut(s)	331, 426
BsuRI	GGCC	2 cut(s)	227, 489
BtgI	CCRYGG	1 cut(s)	295
BtsCI	GGATG	2 cut(s)	174, 328
BtsIMutI	CAGTG	2 cut(s)	295, 462
Cac8I	GCNNGC	1 cut(s)	267
CciI	TCATGA	1 cut(s)	276
Cfr13I	GGNCC	1 cut(s)	437
Csp6I	GTAC	4 cut(s)	13, 85, 157, 302
CspCI	CAANNNNNGTGG	1 cut(s)	510
CviAII	CATG	1 cut(s)	277
CviQI	GTAC	4 cut(s)	13, 85, 157, 302
DdeI	CTNAG	3 cut(s)	24, 261, 308
DpnI	GATC	4 cut(s)	115, 333, 345, 428
DpnII	GATC	4 cut(s)	113, 331, 343, 426
EaeI	YGGCCR	2 cut(s)	225, 487
Eco47I	GGWCC	1 cut(s)	437
Eco57I	CTGAAG	1 cut(s)	271
EcoRII	CCWGG	2 cut(s)	62, 132
FaeI	CATG	1 cut(s)	280
FaiI	YATR	4 cut(s)	185, 278, 315, 411
FalI	AAGNNNNNCTT	2 cut(s)	198, 230
FatI	CATG	1 cut(s)	276
FokI	GGATG	2 cut(s)	181, 335
FspBI	CTAG	3 cut(s)	248, 390, 512
GsuI	CTGGAG	1 cut(s)	116
HaeIII	GGCC	2 cut(s)	227, 489
HapII	CCGG	1 cut(s)	327
Hin1II	CATG	1 cut(s)	280
HpaII	CCGG	1 cut(s)	327
Hpy188I	TCNGA	2 cut(s)	262, 431
Hpy188III	TCNNGA	3 cut(s)	145, 277, 390
HpyAV	CCTTC	1 cut(s)	200
HpyCH4IV	ACGT	1 cut(s)	202
HpyCH4V	TGCA	3 cut(s)	269, 360, 445
HpyF10VI	GCNNNNNNNGC	1 cut(s)	495
HpyF3I	CTNAG	3 cut(s)	24, 261, 308
HpySE526I	ACGT	1 cut(s)	202
Hsp92II	CATG	1 cut(s)	280
KpnI	GGTACC	1 cut(s)	16
Kzo9I	GATC	4 cut(s)	113, 331, 343, 426
LmnI	GCTCC	1 cut(s)	135
LweI	GCATC	4 cut(s)	142, 159, 313, 369
MaeI	CTAG	3 cut(s)	248, 390, 512
MaeII	ACGT	1 cut(s)	202
MalI	GATC	4 cut(s)	115, 333, 345, 428
MbiI	CCGCTC	1 cut(s)	307
MboI	GATC	4 cut(s)	113, 331, 343, 426
MboII	GAAGA	2 cut(s)	277, 355
MflI	RGATCY	2 cut(s)	331, 426
MhlI	GDGCHC	2 cut(s)	132, 295
MlsI	TGGCCA	1 cut(s)	489
MluCI	AATT	3 cut(s)	42, 92, 396
MluNI	TGGCCA	1 cut(s)	489
MnlI	CCTC	7 cut(s)	19, 90, 99, 265, 313, 346, 386
Mox20I	TGGCCA	1 cut(s)	489
MroXI	GAANNNNTTC	1 cut(s)	33
MscI	TGGCCA	1 cut(s)	489
MseI	TTAA	4 cut(s)	45, 216, 368, 399
Msp20I	TGGCCA	1 cut(s)	489
MspCI	CTTAAG	1 cut(s)	215
MspI	CCGG	1 cut(s)	327
MspR9I	CCNGG	2 cut(s)	64, 134
MvaI	CCWGG	2 cut(s)	64, 134
MwoI	GCNNNNNNNGC	1 cut(s)	495
NdeII	GATC	4 cut(s)	113, 331, 343, 426
NlaIII	CATG	1 cut(s)	280
NlaIV	GGNNCC	1 cut(s)	14
PagI	TCATGA	1 cut(s)	276
PdmI	GAANNNNTTC	1 cut(s)	33
PfoI	TCCNGGA	1 cut(s)	132
PsiI	TTATAA	1 cut(s)	185
Psp6I	CCWGG	2 cut(s)	62, 132
PspGI	CCWGG	2 cut(s)	62, 132
PspN4I	GGNNCC	1 cut(s)	14
PspPI	GGNCC	1 cut(s)	437
PstI	CTGCAG	1 cut(s)	271
PsuI	RGATCY	2 cut(s)	331, 426
RsaI	GTAC	4 cut(s)	14, 86, 158, 303
RsaNI	GTAC	4 cut(s)	13, 85, 157, 302
SaqAI	TTAA	4 cut(s)	45, 216, 368, 399
Sau3AI	GATC	4 cut(s)	113, 331, 343, 426
Sau96I	GGNCC	1 cut(s)	437
ScrFI	CCNGG	2 cut(s)	64, 134
SduI	GDGCHC	2 cut(s)	132, 295
SetI	ASST	8 cut(s)	162, 205, 249, 276, 384, 486, 517, 529
SfaNI	GCATC	4 cut(s)	142, 159, 313, 369
SfcI	CTRYAG	1 cut(s)	267
SinI	GGWCC	1 cut(s)	437
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	3 cut(s)	42, 92, 396
SsiI	CCGC	1 cut(s)	305
SspMI	CTAG	3 cut(s)	248, 390, 512
StyD4I	CCNGG	2 cut(s)	62, 132
TaiI	ACGT	1 cut(s)	205
TasI	AATT	3 cut(s)	42, 92, 396
Tru1I	TTAA	4 cut(s)	45, 216, 368, 399
Tru9I	TTAA	4 cut(s)	45, 216, 368, 399
TscAI	CASTG	2 cut(s)	295, 469
TspDTI	ATGAA	3 cut(s)	389, 420, 483
TspGWI	ACGGA	1 cut(s)	312
TspRI	CASTG	2 cut(s)	295, 469
Vha464I	CTTAAG	1 cut(s)	215
VpaK11BI	GGWCC	1 cut(s)	437
XbaI	TCTAGA	1 cut(s)	389
XcmI	CCANNNNNNNNNTGG	1 cut(s)	431
XmnI	GAANNNNTTC	1 cut(s)	33
XspI	CTAG	3 cut(s)	248, 390, 512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.