Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0004323

Physical Location & Seq

Genomic Coordinates Reverse (-)

38833500 .. 38841132

Gene Structure 7633 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00196170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGCGGTACTGGTTCCCGTTCACTGAGGAAGCAGTTCATCAAATTAAGAGGGACAGAATAACCAGGCTTGTTGTCCTGCCTCTATATCCTCAATTCTCTATCTCTACAACTGGATCAAGCGTTCGTGTGCTCCAGAAGATTTTCAGGAACGATCCATATTTATCAAGGTTGCCTGTTTCAGTAATAAACTCATGGTATCAACGTGAAGGTTATATTAAGTCAATGGCTGACTTGATCTCAAAAGAGCTAGAGAGTTTTTCTGAGCCTGCACAGGTCATGATATTCTTCAGTGCCCACGGGGTACCACTAAGTTATGTGAAGGACTCTGGAGATCCATACAAAGATCAAATGGAGGAGTGTATCTTCTTAATAATGAAAGAGTTGAAAGCTAGAGGAATCAATAATGAACATACTCTTGCCTACCAGAGCCGAGTTGGTCCTGTACAATGGTTGAAGCCATACACTGATGAAGTTCTTGTTGAGCTTGGCCAGAAAGGAGTAAAAAGTCTCCTAGCTGTTCCAGTCAGCTTTGTGAGTGAACACATAGAAACTCTTGAAGAGATAGATATGGAGTACAAGGAATTGGCCCTCGAATCCGGCATTGAGAATTGGGGCCGAGTCCCTGCCCTCGGCCTTACACCTTCATTTATAACAGATCTGGCAGATGCAGTTATAGAGGCTCTACCACTGGCAGCAGCCGCTTCAACCCCAAAGATTACCTCAGCAGTTGATCACGACCCTATGACATGGGCTATCAAAATGTTCTTTGGTTCCTTTCTAGCATTCTTTTTGTTCTTTTCGCCAAAAATGCTAATGGCATTCAGGAACCACCTGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0016829 GO:0018130 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046483 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Ferrochelatase

Protein Analysis

279

Amino Acids

31.77

Weight (kDa)

5.59

Isoelectric Point (pI)

38.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ferrochelatase	PF00762	1 - 227	9.2e-75	Ferrochelatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004323)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26030 AT5G26030
fragaria_vesca	FvH4_2g32120 FvH4_2g32120
malus_domestica	MD08G1044400.v1.1 MD15G1061700.v1.1
prunus_persica	Prupe.1G414400_v2.0.a1
pyrus_communis	pycom08g03580 pycom15g05760
rosa_chinensis	RchiOBHm_Chr6g0272541 RchiOBHm_Chr6g0310621
rosa_laevigata	RLG00000010472 RLG00000013668
rosa_multiflora	Rmu_sc0003080.1_g000019 Rmu_sc0005386.1_g000002 Rmu_sc0016392.1_g000002 Rmu_sc0033505.1_g000001
rosa_roxburghii	Rroxscaffold_7G00158420 Rroxscaffold_7G00196170
rosa_rugosa	Rorug06G0069800 Rorug06G0381500 Rorug06G0381600
rosa_samantha	Rh6AG186200 Rh6AG495500 Rh6BG189300 Rh6BG505000 Rh6CG187100 Rh6CG510600 Rh6DG178800 Rh6DG496400
rosa_wichuraiana	Rw6G016040 Rw6G043090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	650
Acc65I	GGTACC	1 cut(s)	301
AccB1I	GGYRCC	1 cut(s)	301
AciI	CCGC	2 cut(s)	4, 699
AclWI	GGATC	3 cut(s)	121, 146, 326
AcoI	YGGCCR	1 cut(s)	487
AcuI	CTGAAG	1 cut(s)	271
AfaI	GTAC	4 cut(s)	8, 303, 444, 575
AfiI	CCNNNNNNNGG	1 cut(s)	629
AgsI	TTSAA	4 cut(s)	385, 454, 557, 705
AjnI	CCWGG	1 cut(s)	62
AloI	GAACNNNNNNTCC	2 cut(s)	105, 137
AluBI	AGCT	5 cut(s)	247, 389, 484, 515, 528
AluI	AGCT	5 cut(s)	247, 389, 484, 515, 528
Alw21I	GWGCWC	1 cut(s)	132
Alw26I	GTCTC	1 cut(s)	512
AlwI	GGATC	3 cut(s)	121, 146, 326
AoxI	GGCC	4 cut(s)	487, 585, 613, 631
ApeKI	GCWGC	2 cut(s)	692, 695
Asp700I	GAANNNNTTC	2 cut(s)	33, 140
Asp718I	GGTACC	1 cut(s)	301
AspS9I	GGNCC	3 cut(s)	437, 586, 613
AvaII	GGWCC	1 cut(s)	437
BaeGI	GKGCMC	1 cut(s)	295
BalI	TGGCCA	1 cut(s)	489
BanI	GGYRCC	1 cut(s)	301
Bbv12I	GWGCWC	1 cut(s)	132
BbvCI	CCTCAGC	1 cut(s)	721
BbvI	GCAGC	2 cut(s)	704, 707
BciT130I	CCWGG	1 cut(s)	64
BclI	TGATCA	1 cut(s)	730
BcoDI	GTCTC	1 cut(s)	512
BfaI	CTAG	4 cut(s)	248, 390, 512, 779
BglII	AGATCT	1 cut(s)	655
BisI	GCNGC	3 cut(s)	693, 696, 699
BlsI	GCNGC	3 cut(s)	694, 697, 700
Bme1390I	CCNGG	1 cut(s)	64
Bme18I	GGWCC	1 cut(s)	437
BmgT120I	GGNCC	3 cut(s)	437, 586, 613
BmiI	GGNNCC	5 cut(s)	14, 303, 614, 772, 827
BmrFI	CCNGG	1 cut(s)	64
BmsI	GCATC	1 cut(s)	655
BpmI	CTGGAG	2 cut(s)	116, 348
Bpu10I	CCTNAGC	1 cut(s)	721
BsaJI	CCNNGG	2 cut(s)	295, 628
Bsc4I	CCNNNNNNNGG	1 cut(s)	629
Bse1I	ACTGG	4 cut(s)	14, 115, 521, 693
BseBI	CCWGG	1 cut(s)	64
BseDI	CCNNGG	2 cut(s)	295, 628
BseLI	CCNNNNNNNGG	1 cut(s)	629
BseMII	CTCAG	3 cut(s)	15, 252, 735
BseNI	ACTGG	4 cut(s)	14, 115, 521, 693
BseRI	GAGGAG	1 cut(s)	368
BseSI	GKGCMC	1 cut(s)	295
BseXI	GCAGC	2 cut(s)	704, 707
BsgI	GTGCAG	1 cut(s)	252
BshFI	GGCC	4 cut(s)	489, 587, 615, 633
BshNI	GGYRCC	1 cut(s)	301
BsiHKAI	GWGCWC	1 cut(s)	132
BsiSI	CCGG	1 cut(s)	597
BslFI	GGGAC	2 cut(s)	65, 605
BslI	CCNNNNNNNGG	1 cut(s)	629
BsmAI	GTCTC	1 cut(s)	512
BsmFI	GGGAC	2 cut(s)	65, 605
BsmI	GAATGC	2 cut(s)	782, 818
BsnI	GGCC	4 cut(s)	489, 587, 615, 633
Bsp1286I	GDGCHC	2 cut(s)	132, 295
Bsp1407I	TGTACA	1 cut(s)	442
Bsp143I	GATC	7 cut(s)	113, 151, 234, 331, 343, 655, 730
BspACI	CCGC	2 cut(s)	4, 699
BspANI	GGCC	4 cut(s)	489, 587, 615, 633
BspCNI	CTCAG	3 cut(s)	16, 253, 734
BspHI	TCATGA	1 cut(s)	276
BspLI	GGNNCC	5 cut(s)	14, 303, 614, 772, 827
BspPI	GGATC	3 cut(s)	121, 146, 326
BspT107I	GGYRCC	1 cut(s)	301
BsrGI	TGTACA	1 cut(s)	442
BsrI	ACTGG	4 cut(s)	14, 115, 521, 693
BssECI	CCNNGG	2 cut(s)	295, 628
BssMI	GATC	7 cut(s)	113, 151, 234, 331, 343, 655, 730
Bst2UI	CCWGG	1 cut(s)	64
Bst6I	CTCTTC	1 cut(s)	552
BstAUI	TGTACA	1 cut(s)	442
BstC8I	GCNNGC	1 cut(s)	267
BstDEI	CTNAG	4 cut(s)	24, 261, 308, 721
BstDSI	CCRYGG	1 cut(s)	295
BstKTI	GATC	7 cut(s)	116, 154, 237, 334, 346, 658, 733
BstMAI	GTCTC	1 cut(s)	512
BstMBI	GATC	7 cut(s)	113, 151, 234, 331, 343, 655, 730
BstMWI	GCNNNNNNNGC	2 cut(s)	698, 808
BstNI	CCWGG	1 cut(s)	64
BstSCI	CCNGG	1 cut(s)	62
BstSLI	GKGCMC	1 cut(s)	295
BstV1I	GCAGC	2 cut(s)	704, 707
BstX2I	RGATCY	2 cut(s)	331, 655
BstYI	RGATCY	2 cut(s)	331, 655
BsuRI	GGCC	4 cut(s)	489, 587, 615, 633
BtgI	CCRYGG	1 cut(s)	295
BtsIMutI	CAGTG	4 cut(s)	21, 295, 462, 686
Cac8I	GCNNGC	1 cut(s)	267
CciI	TCATGA	1 cut(s)	276
Cfr13I	GGNCC	3 cut(s)	437, 586, 613
Csp6I	GTAC	4 cut(s)	7, 302, 443, 574
CspCI	CAANNNNNGTGG	1 cut(s)	818
CviAII	CATG	3 cut(s)	192, 277, 747
CviQI	GTAC	4 cut(s)	7, 302, 443, 574
DdeI	CTNAG	4 cut(s)	24, 261, 308, 721
DpnI	GATC	7 cut(s)	115, 153, 236, 333, 345, 657, 732
DpnII	GATC	7 cut(s)	113, 151, 234, 331, 343, 655, 730
EaeI	YGGCCR	1 cut(s)	487
Eam1104I	CTCTTC	1 cut(s)	552
EarI	CTCTTC	1 cut(s)	552
Eco47I	GGWCC	1 cut(s)	437
Eco57I	CTGAAG	1 cut(s)	271
EcoRII	CCWGG	1 cut(s)	62
FaeI	CATG	3 cut(s)	195, 280, 750
FaqI	GGGAC	2 cut(s)	65, 605
FatI	CATG	3 cut(s)	191, 276, 746
FbaI	TGATCA	1 cut(s)	730
Fnu4HI	GCNGC	3 cut(s)	693, 696, 699
Fsp4HI	GCNGC	3 cut(s)	693, 696, 699
FspBI	CTAG	4 cut(s)	248, 390, 512, 779
GluI	GCNGC	3 cut(s)	693, 696, 699
GsuI	CTGGAG	2 cut(s)	116, 348
HaeIII	GGCC	4 cut(s)	489, 587, 615, 633
HapII	CCGG	1 cut(s)	597
Hin1II	CATG	3 cut(s)	195, 280, 750
HinfI	GANTC	4 cut(s)	323, 396, 593, 618
HpaII	CCGG	1 cut(s)	597
Hpy166II	GTNNAC	2 cut(s)	21, 539
Hpy188I	TCNGA	1 cut(s)	262
Hpy188III	TCNNGA	7 cut(s)	133, 145, 277, 327, 554, 734, 823
Hpy8I	GTNNAC	2 cut(s)	21, 539
HpyAV	CCTTC	3 cut(s)	200, 313, 651
HpyCH4IV	ACGT	1 cut(s)	202
HpyCH4V	TGCA	2 cut(s)	269, 668
HpyF10VI	GCNNNNNNNGC	2 cut(s)	698, 808
HpyF3I	CTNAG	4 cut(s)	24, 261, 308, 721
HpySE526I	ACGT	1 cut(s)	202
Hsp92II	CATG	3 cut(s)	195, 280, 750
KpnI	GGTACC	1 cut(s)	305
Ksp22I	TGATCA	1 cut(s)	730
Kzo9I	GATC	7 cut(s)	113, 151, 234, 331, 343, 655, 730
LmnI	GCTCC	1 cut(s)	135
Lsp1109I	GCAGC	2 cut(s)	704, 707
LweI	GCATC	1 cut(s)	655
MaeI	CTAG	4 cut(s)	248, 390, 512, 779
MaeII	ACGT	1 cut(s)	202
MalI	GATC	7 cut(s)	115, 153, 236, 333, 345, 657, 732
MboI	GATC	7 cut(s)	113, 151, 234, 331, 343, 655, 730
MboII	GAAGA	4 cut(s)	148, 277, 355, 569
MflI	RGATCY	2 cut(s)	331, 655
MhlI	GDGCHC	2 cut(s)	132, 295
MlsI	TGGCCA	1 cut(s)	489
MluCI	AATT	4 cut(s)	42, 92, 581, 607
MluNI	TGGCCA	1 cut(s)	489
MlyI	GAGTC	2 cut(s)	317, 627
Mox20I	TGGCCA	1 cut(s)	489
MroXI	GAANNNNTTC	2 cut(s)	33, 140
MscI	TGGCCA	1 cut(s)	489
MseI	TTAA	3 cut(s)	45, 216, 368
Msp20I	TGGCCA	1 cut(s)	489
MspI	CCGG	1 cut(s)	597
MspR9I	CCNGG	1 cut(s)	64
Mva1269I	GAATGC	2 cut(s)	782, 818
MvaI	CCWGG	1 cut(s)	64
MwoI	GCNNNNNNNGC	2 cut(s)	698, 808
NdeII	GATC	7 cut(s)	113, 151, 234, 331, 343, 655, 730
NlaIII	CATG	3 cut(s)	195, 280, 750
NlaIV	GGNNCC	5 cut(s)	14, 303, 614, 772, 827
NmeAIII	GCCGAG	3 cut(s)	455, 609, 641
PagI	TCATGA	1 cut(s)	276
PctI	GAATGC	2 cut(s)	782, 818
PdmI	GAANNNNTTC	2 cut(s)	33, 140
PfeI	GAWTC	2 cut(s)	396, 593
PkrI	GCNGC	3 cut(s)	694, 697, 700
PleI	GAGTC	2 cut(s)	317, 626
PpsI	GAGTC	2 cut(s)	317, 626
PsiI	TTATAA	1 cut(s)	650
Psp6I	CCWGG	1 cut(s)	62
PspGI	CCWGG	1 cut(s)	62
PspN4I	GGNNCC	5 cut(s)	14, 303, 614, 772, 827
PspPI	GGNCC	3 cut(s)	437, 586, 613
PsuI	RGATCY	2 cut(s)	331, 655
RsaI	GTAC	4 cut(s)	8, 303, 444, 575
RsaNI	GTAC	4 cut(s)	7, 302, 443, 574
SaqAI	TTAA	3 cut(s)	45, 216, 368
SatI	GCNGC	3 cut(s)	693, 696, 699
Sau3AI	GATC	7 cut(s)	113, 151, 234, 331, 343, 655, 730
Sau96I	GGNCC	3 cut(s)	437, 586, 613
SchI	GAGTC	2 cut(s)	317, 627
ScrFI	CCNGG	1 cut(s)	64
SduI	GDGCHC	2 cut(s)	132, 295
SfaNI	GCATC	1 cut(s)	655
SinI	GGWCC	1 cut(s)	437
Sse9I	AATT	4 cut(s)	42, 92, 581, 607
SsiI	CCGC	2 cut(s)	4, 699
SspMI	CTAG	4 cut(s)	248, 390, 512, 779
StyD4I	CCNGG	1 cut(s)	62
TaiI	ACGT	1 cut(s)	205
TaqI	TCGA	1 cut(s)	591
TasI	AATT	4 cut(s)	42, 92, 581, 607
TatI	WGTACW	2 cut(s)	442, 573
TauI	GCSGC	1 cut(s)	701
TfiI	GAWTC	2 cut(s)	396, 593
Tru1I	TTAA	3 cut(s)	45, 216, 368
Tru9I	TTAA	3 cut(s)	45, 216, 368
TscAI	CASTG	4 cut(s)	28, 295, 469, 693
TseI	GCWGC	2 cut(s)	692, 695
TspDTI	ATGAA	5 cut(s)	26, 389, 420, 483, 633
TspRI	CASTG	4 cut(s)	28, 295, 469, 693
VpaK11BI	GGWCC	1 cut(s)	437
XcmI	CCANNNNNNNNNTGG	1 cut(s)	431
XmnI	GAANNNNTTC	2 cut(s)	33, 140
XspI	CTAG	4 cut(s)	248, 390, 512, 779

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.