Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0033505.1

Orthogroup ID

OG0004323

Physical Location & Seq

Genomic Coordinates Forward (+)

15 .. 744

Gene Structure 730 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0033505.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

atgaaagagttgaaagctagaggaatcaataatgaacatactcttgcctaccagagccgagttggtcctgtacaatggttgaagccatacactgatgaagttcttgttgagcttggccagaaaggagtaaaaagtcttctagctgttccagtcagctttgtgagtgagcacatagaaactcttgaagagatagatatggagtacaaggagttggccctcgaatccggcattgagaattggggccgagtccctgcccttggccttaccccttcatttataacagatctggcagatgcagttatagaggctctaccactggcagcagccacttcaaccccaaagactaccccagcagttgatcatgaccctatgagatgggctatcaaaatgttctttggttcatttctagcattcattttgttcttttcaccaaagatgctaatggcattcaggaaccacctgatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0016829 GO:0018130 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046483 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Ferrochelatase

Protein Analysis

155

Amino Acids

17.32

Weight (kDa)

5.34

Isoelectric Point (pI)

43.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004323)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26030 AT5G26030
fragaria_vesca	FvH4_2g32120 FvH4_2g32120
malus_domestica	MD08G1044400.v1.1 MD15G1061700.v1.1
prunus_persica	Prupe.1G414400_v2.0.a1
pyrus_communis	pycom08g03580 pycom15g05760
rosa_chinensis	RchiOBHm_Chr6g0272541 RchiOBHm_Chr6g0310621
rosa_laevigata	RLG00000010472 RLG00000013668
rosa_multiflora	Rmu_sc0003080.1_g000019 Rmu_sc0005386.1_g000002 Rmu_sc0016392.1_g000002 Rmu_sc0033505.1_g000001
rosa_roxburghii	Rroxscaffold_7G00158420 Rroxscaffold_7G00196170
rosa_rugosa	Rorug06G0069800 Rorug06G0381500 Rorug06G0381600
rosa_samantha	Rh6AG186200 Rh6AG495500 Rh6BG189300 Rh6BG505000 Rh6CG187100 Rh6CG510600 Rh6DG178800 Rh6DG496400
rosa_wichuraiana	Rw6G016040 Rw6G043090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	278
AcoI	YGGCCR	1 cut(s)	115
AfaI	GTAC	2 cut(s)	72, 203
AfiI	CCNNNNNNNGG	1 cut(s)	257
AgsI	TTSAA	4 cut(s)	13, 82, 185, 333
AluBI	AGCT	4 cut(s)	17, 112, 143, 156
AluI	AGCT	4 cut(s)	17, 112, 143, 156
Alw21I	GWGCWC	1 cut(s)	171
AoxI	GGCC	4 cut(s)	115, 213, 241, 259
ApeKI	GCWGC	2 cut(s)	320, 323
AspS9I	GGNCC	3 cut(s)	65, 214, 241
AsuHPI	GGTGA	1 cut(s)	420
AvaII	GGWCC	1 cut(s)	65
BalI	TGGCCA	1 cut(s)	117
BarI	GAAGNNNNNNTAC	2 cut(s)	120, 152
BbsI	GAAGAC	1 cut(s)	128
Bbv12I	GWGCWC	1 cut(s)	171
BbvI	GCAGC	2 cut(s)	332, 335
BccI	CCATC	1 cut(s)	369
BclI	TGATCA	1 cut(s)	358
BfaI	CTAG	3 cut(s)	18, 140, 407
BglII	AGATCT	1 cut(s)	283
BisI	GCNGC	2 cut(s)	321, 324
BlsI	GCNGC	2 cut(s)	322, 325
Bme18I	GGWCC	1 cut(s)	65
BmgT120I	GGNCC	3 cut(s)	65, 214, 241
BmiI	GGNNCC	2 cut(s)	242, 455
BmsI	GCATC	2 cut(s)	283, 426
BpiI	GAAGAC	1 cut(s)	128
BsaJI	CCNNGG	1 cut(s)	256
Bsc4I	CCNNNNNNNGG	1 cut(s)	257
Bse1I	ACTGG	2 cut(s)	149, 321
BseDI	CCNNGG	1 cut(s)	256
BseLI	CCNNNNNNNGG	1 cut(s)	257
BseNI	ACTGG	2 cut(s)	149, 321
BseXI	GCAGC	2 cut(s)	332, 335
BseYI	CCCAGC	1 cut(s)	349
BshFI	GGCC	4 cut(s)	117, 215, 243, 261
BsiHKAI	GWGCWC	1 cut(s)	171
BsiSI	CCGG	1 cut(s)	225
BslFI	GGGAC	1 cut(s)	233
BslI	CCNNNNNNNGG	1 cut(s)	257
BsmFI	GGGAC	1 cut(s)	233
BsmI	GAATGC	2 cut(s)	410, 446
BsnI	GGCC	4 cut(s)	117, 215, 243, 261
Bsp1286I	GDGCHC	1 cut(s)	171
Bsp1407I	TGTACA	1 cut(s)	70
Bsp143I	GATC	2 cut(s)	283, 358
BspANI	GGCC	4 cut(s)	117, 215, 243, 261
BspHI	TCATGA	1 cut(s)	361
BspLI	GGNNCC	2 cut(s)	242, 455
BsrGI	TGTACA	1 cut(s)	70
BsrI	ACTGG	2 cut(s)	149, 321
BssECI	CCNNGG	1 cut(s)	256
BssMI	GATC	2 cut(s)	283, 358
BssT1I	CCWWGG	1 cut(s)	256
Bst6I	CTCTTC	1 cut(s)	180
BstAUI	TGTACA	1 cut(s)	70
BstKTI	GATC	2 cut(s)	286, 361
BstMBI	GATC	2 cut(s)	283, 358
BstV1I	GCAGC	2 cut(s)	332, 335
BstV2I	GAAGAC	1 cut(s)	128
BstX2I	RGATCY	1 cut(s)	283
BstYI	RGATCY	1 cut(s)	283
BsuRI	GGCC	4 cut(s)	117, 215, 243, 261
BtsIMutI	CAGTG	2 cut(s)	90, 314
CciI	TCATGA	1 cut(s)	361
Cfr13I	GGNCC	3 cut(s)	65, 214, 241
Csp6I	GTAC	2 cut(s)	71, 202
CspCI	CAANNNNNGTGG	1 cut(s)	446
CviAII	CATG	1 cut(s)	362
CviQI	GTAC	2 cut(s)	71, 202
DpnI	GATC	2 cut(s)	285, 360
DpnII	GATC	2 cut(s)	283, 358
EaeI	YGGCCR	1 cut(s)	115
Eam1104I	CTCTTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	180
Eco130I	CCWWGG	1 cut(s)	256
Eco47I	GGWCC	1 cut(s)	65
EcoT14I	CCWWGG	1 cut(s)	256
ErhI	CCWWGG	1 cut(s)	256
FaeI	CATG	1 cut(s)	365
FaiI	YATR	8 cut(s)	39, 88, 173, 197, 278, 302, 363, 371
FaqI	GGGAC	1 cut(s)	233
FatI	CATG	1 cut(s)	361
FbaI	TGATCA	1 cut(s)	358
Fnu4HI	GCNGC	2 cut(s)	321, 324
Fsp4HI	GCNGC	2 cut(s)	321, 324
FspBI	CTAG	3 cut(s)	18, 140, 407
GluI	GCNGC	2 cut(s)	321, 324
GsaI	CCCAGC	1 cut(s)	353
HaeIII	GGCC	4 cut(s)	117, 215, 243, 261
HapII	CCGG	1 cut(s)	225
Hin1II	CATG	1 cut(s)	365
HinfI	GANTC	3 cut(s)	24, 221, 246
HpaII	CCGG	1 cut(s)	225
HphI	GGTGA	1 cut(s)	420
Hpy188III	TCNNGA	3 cut(s)	182, 362, 451
HpyAV	CCTTC	1 cut(s)	279
HpyCH4V	TGCA	1 cut(s)	296
Hsp92II	CATG	1 cut(s)	365
Ksp22I	TGATCA	1 cut(s)	358
Kzo9I	GATC	2 cut(s)	283, 358
Lsp1109I	GCAGC	2 cut(s)	332, 335
LweI	GCATC	2 cut(s)	283, 426
MaeI	CTAG	3 cut(s)	18, 140, 407
MalI	GATC	2 cut(s)	285, 360
MboI	GATC	2 cut(s)	283, 358
MboII	GAAGA	2 cut(s)	128, 197
MflI	RGATCY	1 cut(s)	283
MhlI	GDGCHC	1 cut(s)	171
MlsI	TGGCCA	1 cut(s)	117
MluCI	AATT	1 cut(s)	235
MluNI	TGGCCA	1 cut(s)	117
MlyI	GAGTC	1 cut(s)	255
MnlI	CCTC	3 cut(s)	14, 227, 298
Mox20I	TGGCCA	1 cut(s)	117
MscI	TGGCCA	1 cut(s)	117
Msp20I	TGGCCA	1 cut(s)	117
MspI	CCGG	1 cut(s)	225
Mva1269I	GAATGC	2 cut(s)	410, 446
NdeII	GATC	2 cut(s)	283, 358
NlaIII	CATG	1 cut(s)	365
NlaIV	GGNNCC	2 cut(s)	242, 455
NmeAIII	GCCGAG	2 cut(s)	83, 269
PagI	TCATGA	1 cut(s)	361
PctI	GAATGC	2 cut(s)	410, 446
PfeI	GAWTC	2 cut(s)	24, 221
PkrI	GCNGC	2 cut(s)	322, 325
PleI	GAGTC	1 cut(s)	254
PpsI	GAGTC	1 cut(s)	254
PsiI	TTATAA	1 cut(s)	278
PspFI	CCCAGC	1 cut(s)	349
PspN4I	GGNNCC	2 cut(s)	242, 455
PspPI	GGNCC	3 cut(s)	65, 214, 241
PsuI	RGATCY	1 cut(s)	283
RsaI	GTAC	2 cut(s)	72, 203
RsaNI	GTAC	2 cut(s)	71, 202
SatI	GCNGC	2 cut(s)	321, 324
Sau3AI	GATC	2 cut(s)	283, 358
Sau96I	GGNCC	3 cut(s)	65, 214, 241
SchI	GAGTC	1 cut(s)	255
SduI	GDGCHC	1 cut(s)	171
SetI	ASST	5 cut(s)	19, 114, 145, 158, 462
SfaNI	GCATC	2 cut(s)	283, 426
SinI	GGWCC	1 cut(s)	65
Sse9I	AATT	1 cut(s)	235
SspMI	CTAG	3 cut(s)	18, 140, 407
StyI	CCWWGG	1 cut(s)	256
TaqI	TCGA	1 cut(s)	219
TasI	AATT	1 cut(s)	235
TatI	WGTACW	2 cut(s)	70, 201
TfiI	GAWTC	2 cut(s)	24, 221
TscAI	CASTG	2 cut(s)	97, 321
TseI	GCWGC	2 cut(s)	320, 323
TspDTI	ATGAA	6 cut(s)	17, 48, 111, 261, 390, 403
TspRI	CASTG	2 cut(s)	97, 321
VpaK11BI	GGWCC	1 cut(s)	65
XcmI	CCANNNNNNNNNTGG	1 cut(s)	59
XspI	CTAG	3 cut(s)	18, 140, 407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.