Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016392.1

Orthogroup ID

OG0004323

Physical Location & Seq

Genomic Coordinates Reverse (-)

10070 .. 12268

Gene Structure 2199 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016392.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

atggacgccgccgtttcatgctccggtgtctttccccaaatgaacctctccggctccgacctctcccgctcaggtcttaaatttccgatgggtaggtcttcgtgctcttacgcgaggtcaattggggcggtttcttgcaatgaaggactgcgaatcgttccgaaaaagcttgaattcttgtgctctgctgcgtcgagagatgaagagaggaatgaaatggtgtttggggcatcgcattgcgggaagaaaagtcctgttggggaggcattgtgtgttgctgcgggtgtatgcacttatggtgggactgctgtggagtctcatcactcccacattgcggaagagaatgttggagtgctgctcctgaatcttggaggacccgagacgcttgatgatgttcagccattcctgtttaatctattcgctgacccggatatcatacgtctacctagggcgtttcggtttcttcagaagccactggcaaaattgatttctgtgcttcgagctcccaagagcaaagaagggtatgcgtctattggaggtggttcgcccttgcgtaagataacagatgagcaggcaaatgcactgaaaatggctttggaatcaaaggacatgccagtgaatgtctatgtgggaatgcggtactggtacccattcactgaggaagcagttcatcaaattaagagggacagaataaccaggcttgttgtcctgcctctatatcctcaattctctatctctacaactggatcaagcgttcgtgtgctccagaagattttcaggaccgatccatatctatcaaggttgcctgtttcagttataaattcatggtatcaacgtgaaggttatattaagtcaatggctgacttgatctcaaaagagctagagagtttttctgagcctgcacaggtcatgatattcttcagtgcccacggggtaccactcagttatgtgaaggactctggagatccatacaaagatcaaatggaggagtgtatctttctaataatgaaagagttgaaagctagaggaatcaataatgaacatactcttgcctaccagagccgagttggtcctgtacaatggttgaagccatacactgatgaagttcttgttgagcttggccagaaaggagtaaaaagtcttctagctgttccagtcaggtatttcactctgtcatataaaaagtctgctatgtccaagtctgttatagagctatgcagtatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0016829 GO:0018130 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046483 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Ferrochelatase

Protein Analysis

408

Amino Acids

45.22

Weight (kDa)

8.7

Isoelectric Point (pI)

43.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004323)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26030 AT5G26030
fragaria_vesca	FvH4_2g32120 FvH4_2g32120
malus_domestica	MD08G1044400.v1.1 MD15G1061700.v1.1
prunus_persica	Prupe.1G414400_v2.0.a1
pyrus_communis	pycom08g03580 pycom15g05760
rosa_chinensis	RchiOBHm_Chr6g0272541 RchiOBHm_Chr6g0310621
rosa_laevigata	RLG00000010472 RLG00000013668
rosa_multiflora	Rmu_sc0003080.1_g000019 Rmu_sc0005386.1_g000002 Rmu_sc0016392.1_g000002 Rmu_sc0033505.1_g000001
rosa_roxburghii	Rroxscaffold_7G00158420 Rroxscaffold_7G00196170
rosa_rugosa	Rorug06G0069800 Rorug06G0381500 Rorug06G0381600
rosa_samantha	Rh6AG186200 Rh6AG495500 Rh6BG189300 Rh6BG505000 Rh6CG187100 Rh6CG510600 Rh6DG178800 Rh6DG496400
rosa_wichuraiana	Rw6G016040 Rw6G043090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	818
Acc65I	GGTACC	2 cut(s)	645, 934
AccB1I	GGYRCC	2 cut(s)	645, 934
AccBSI	CCGCTC	1 cut(s)	69
AccI	GTMKAC	1 cut(s)	442
AccII	CGCG	1 cut(s)	113
AciI	CCGC	7 cut(s)	9, 67, 128, 240, 281, 335, 637
AclWI	GGATC	3 cut(s)	754, 779, 959
AcoI	YGGCCR	1 cut(s)	1120
AcsI	RAATTY	3 cut(s)	80, 173, 820
AcuI	CTGAAG	2 cut(s)	449, 904
AcyI	GRCGYC	1 cut(s)	6
AfaI	GTAC	4 cut(s)	641, 647, 936, 1077
AfiI	CCNNNNNNNGG	1 cut(s)	334
AgsI	TTSAA	3 cut(s)	173, 1018, 1087
AjnI	CCWGG	1 cut(s)	695
AjuI	GAANNNNNNNTTGG	6 cut(s)	207, 239, 330, 362, 578, 610
AloI	GAACNNNNNNTCC	2 cut(s)	738, 770
AluBI	AGCT	7 cut(s)	169, 503, 880, 1022, 1117, 1148, 1213
AluI	AGCT	7 cut(s)	169, 503, 880, 1022, 1117, 1148, 1213
Alw21I	GWGCWC	4 cut(s)	107, 185, 505, 765
Alw26I	GTCTC	2 cut(s)	321, 374
AlwI	GGATC	3 cut(s)	754, 779, 959
Ama87I	CYCGRG	1 cut(s)	377
AoxI	GGCC	1 cut(s)	1120
ApeKI	GCWGC	3 cut(s)	188, 278, 355
ApoI	RAATTY	3 cut(s)	80, 173, 820
Asp700I	GAANNNNTTC	2 cut(s)	666, 773
Asp718I	GGTACC	2 cut(s)	645, 934
AspA2I	CCTAGG	1 cut(s)	446
AspS9I	GGNCC	3 cut(s)	374, 780, 1070
AsuC2I	CCSGG	1 cut(s)	428
AvaI	CYCGRG	1 cut(s)	377
AvaII	GGWCC	3 cut(s)	374, 780, 1070
AvrII	CCTAGG	1 cut(s)	446
BaeGI	GKGCMC	1 cut(s)	928
BalI	TGGCCA	1 cut(s)	1122
BanI	GGYRCC	2 cut(s)	645, 934
BanII	GRGCYC	1 cut(s)	505
BarI	GAAGNNNNNNTAC	2 cut(s)	1125, 1157
BbsI	GAAGAC	2 cut(s)	90, 1133
Bbv12I	GWGCWC	4 cut(s)	107, 185, 505, 765
BbvI	GCAGC	3 cut(s)	175, 265, 342
BccI	CCATC	1 cut(s)	82
BciT130I	CCWGG	1 cut(s)	697
BcnI	CCSGG	1 cut(s)	428
BcoDI	GTCTC	2 cut(s)	321, 374
BfaI	CTAG	4 cut(s)	447, 881, 1023, 1145
BisI	GCNGC	4 cut(s)	9, 189, 279, 356
BlnI	CCTAGG	1 cut(s)	446
BlsI	GCNGC	4 cut(s)	10, 190, 280, 357
Bme1390I	CCNGG	2 cut(s)	428, 697
Bme18I	GGWCC	3 cut(s)	374, 780, 1070
BmeT110I	CYCGRG	1 cut(s)	377
BmgT120I	GGNCC	3 cut(s)	374, 780, 1070
BmiI	GGNNCC	4 cut(s)	55, 376, 647, 936
BmrFI	CCNGG	2 cut(s)	428, 697
BmsI	GCATC	1 cut(s)	239
BpiI	GAAGAC	2 cut(s)	90, 1133
BplI	GAGNNNNNCTC	2 cut(s)	342, 374
BpmI	CTGGAG	2 cut(s)	749, 981
Bpu10I	CCTNAGC	1 cut(s)	70
BpuMI	CCSGG	1 cut(s)	428
BsaBI	GATNNNNATC	1 cut(s)	789
BsaHI	GRCGYC	1 cut(s)	6
BsaJI	CCNNGG	2 cut(s)	446, 928
BsaWI	WCCGGW	1 cut(s)	23
BsaXI	ACNNNNNCTCC	2 cut(s)	254, 284
Bsc4I	CCNNNNNNNGG	1 cut(s)	334
Bse1I	ACTGG	5 cut(s)	480, 614, 647, 748, 1154
Bse3DI	GCAATG	3 cut(s)	145, 235, 330
Bse8I	GATNNNNATC	1 cut(s)	789
BseBI	CCWGG	1 cut(s)	697
BseDI	CCNNGG	2 cut(s)	446, 928
BseJI	GATNNNNATC	1 cut(s)	789
BseLI	CCNNNNNNNGG	1 cut(s)	334
BseMI	GCAATG	3 cut(s)	145, 235, 330
BseMII	CTCAG	4 cut(s)	84, 648, 885, 955
BseNI	ACTGG	5 cut(s)	480, 614, 647, 748, 1154
BseRI	GAGGAG	1 cut(s)	1001
BseSI	GKGCMC	1 cut(s)	928
BseXI	GCAGC	3 cut(s)	175, 265, 342
BsgI	GTGCAG	1 cut(s)	885
Bsh1236I	CGCG	1 cut(s)	113
BshFI	GGCC	1 cut(s)	1122
BshNI	GGYRCC	2 cut(s)	645, 934
BsiHKAI	GWGCWC	4 cut(s)	107, 185, 505, 765
BsiHKCI	CYCGRG	1 cut(s)	377
BsiSI	CCGG	3 cut(s)	24, 51, 428
BslFI	GGGAC	2 cut(s)	316, 698
BslI	CCNNNNNNNGG	1 cut(s)	334
BsmAI	GTCTC	2 cut(s)	321, 374
BsmBI	CGTCTC	1 cut(s)	374
BsmFI	GGGAC	2 cut(s)	316, 698
BsmI	GAATGC	1 cut(s)	639
BsnI	GGCC	1 cut(s)	1122
BsoBI	CYCGRG	1 cut(s)	377
Bsp1286I	GDGCHC	5 cut(s)	107, 185, 505, 765, 928
Bsp1407I	TGTACA	1 cut(s)	1075
Bsp143I	GATC	5 cut(s)	746, 784, 867, 964, 976
BspACI	CCGC	7 cut(s)	9, 67, 128, 240, 281, 335, 637
BspANI	GGCC	1 cut(s)	1122
BspCNI	CTCAG	4 cut(s)	83, 649, 886, 954
BspFNI	CGCG	1 cut(s)	113
BspHI	TCATGA	1 cut(s)	909
BspLI	GGNNCC	4 cut(s)	55, 376, 647, 936
BspPI	GGATC	3 cut(s)	754, 779, 959
BspT107I	GGYRCC	2 cut(s)	645, 934
BsrBI	CCGCTC	1 cut(s)	69
BsrDI	GCAATG	3 cut(s)	145, 235, 330
BsrGI	TGTACA	1 cut(s)	1075
BsrI	ACTGG	5 cut(s)	480, 614, 647, 748, 1154
BssECI	CCNNGG	2 cut(s)	446, 928
BssMI	GATC	5 cut(s)	746, 784, 867, 964, 976
BssNI	GRCGYC	1 cut(s)	6
BssT1I	CCWWGG	1 cut(s)	446
Bst2UI	CCWGG	1 cut(s)	697
Bst6I	CTCTTC	2 cut(s)	198, 333
BstACI	GRCGYC	1 cut(s)	6
BstAUI	TGTACA	1 cut(s)	1075
BstC8I	GCNNGC	2 cut(s)	573, 900
BstDEI	CTNAG	4 cut(s)	70, 657, 894, 941
BstDSI	CCRYGG	1 cut(s)	928
BstFNI	CGCG	1 cut(s)	113
BstKTI	GATC	5 cut(s)	749, 787, 870, 967, 979
BstMAI	GTCTC	2 cut(s)	321, 374
BstMBI	GATC	5 cut(s)	746, 784, 867, 964, 976
BstNI	CCWGG	1 cut(s)	697
BstNSI	RCATGY	1 cut(s)	613
BstSCI	CCNGG	2 cut(s)	426, 695
BstSLI	GKGCMC	1 cut(s)	928
BstUI	CGCG	1 cut(s)	113
BstV1I	GCAGC	3 cut(s)	175, 265, 342
BstV2I	GAAGAC	2 cut(s)	90, 1133
BstX2I	RGATCY	1 cut(s)	964
BstYI	RGATCY	1 cut(s)	964
BsuRI	GGCC	1 cut(s)	1122
BtgI	CCRYGG	1 cut(s)	928
BtgZI	GCGATG	1 cut(s)	216
BtsIMutI	CAGTG	6 cut(s)	473, 581, 621, 654, 928, 1095
Cac8I	GCNNGC	2 cut(s)	573, 900
CciI	TCATGA	1 cut(s)	909
Cfr13I	GGNCC	3 cut(s)	374, 780, 1070
CseI	GACGC	4 cut(s)	14, 180, 391, 516
Csp6I	GTAC	4 cut(s)	640, 646, 935, 1076
CviAII	CATG	4 cut(s)	18, 610, 825, 910
CviQI	GTAC	4 cut(s)	640, 646, 935, 1076
DdeI	CTNAG	4 cut(s)	70, 657, 894, 941
DpnI	GATC	5 cut(s)	748, 786, 869, 966, 978
DpnII	GATC	5 cut(s)	746, 784, 867, 964, 976
EaeI	YGGCCR	1 cut(s)	1120
Eam1104I	CTCTTC	2 cut(s)	198, 333
EarI	CTCTTC	2 cut(s)	198, 333
Ecl136II	GAGCTC	1 cut(s)	503
Eco130I	CCWWGG	1 cut(s)	446
Eco24I	GRGCYC	1 cut(s)	505
Eco32I	GATATC	1 cut(s)	433
Eco47I	GGWCC	3 cut(s)	374, 780, 1070
Eco53kI	GAGCTC	1 cut(s)	503
Eco57I	CTGAAG	2 cut(s)	449, 904
Eco88I	CYCGRG	1 cut(s)	377
EcoICRI	GAGCTC	1 cut(s)	503
EcoO109I	RGGNCCY	1 cut(s)	374
EcoRI	GAATTC	1 cut(s)	173
EcoRII	CCWGG	1 cut(s)	695
EcoRV	GATATC	1 cut(s)	433
EcoT14I	CCWWGG	1 cut(s)	446
EcoT38I	GRGCYC	1 cut(s)	505
ErhI	CCWWGG	1 cut(s)	446
Esp3I	CGTCTC	1 cut(s)	374
FaeI	CATG	4 cut(s)	21, 613, 828, 913
FaqI	GGGAC	2 cut(s)	316, 698
FatI	CATG	4 cut(s)	17, 609, 824, 909
FauI	CCCGC	3 cut(s)	74, 233, 274
FblI	GTMKAC	1 cut(s)	442
Fnu4HI	GCNGC	4 cut(s)	9, 189, 279, 356
FriOI	GRGCYC	1 cut(s)	505
Fsp4HI	GCNGC	4 cut(s)	9, 189, 279, 356
FspBI	CTAG	4 cut(s)	447, 881, 1023, 1145
GluI	GCNGC	4 cut(s)	9, 189, 279, 356
GsuI	CTGGAG	2 cut(s)	749, 981
HaeIII	GGCC	1 cut(s)	1122
HapII	CCGG	3 cut(s)	24, 51, 428
HgaI	GACGC	4 cut(s)	14, 180, 391, 516
Hin1I	GRCGYC	1 cut(s)	6
Hin1II	CATG	4 cut(s)	21, 613, 828, 913
HindIII	AAGCTT	1 cut(s)	167
HinfI	GANTC	6 cut(s)	153, 314, 364, 599, 956, 1029
HpaII	CCGG	3 cut(s)	24, 51, 428
Hpy166II	GTNNAC	1 cut(s)	443
Hpy188I	TCNGA	5 cut(s)	58, 87, 162, 468, 895
Hpy188III	TCNNGA	6 cut(s)	195, 361, 766, 778, 910, 960
Hpy8I	GTNNAC	1 cut(s)	443
Hpy99I	CGWCG	1 cut(s)	196
HpyAV	CCTTC	4 cut(s)	137, 512, 833, 946
HpyCH4IV	ACGT	2 cut(s)	439, 835
HpyCH4V	TGCA	5 cut(s)	138, 291, 581, 902, 1218
HpyF3I	CTNAG	4 cut(s)	70, 657, 894, 941
HpySE526I	ACGT	2 cut(s)	439, 835
Hsp92I	GRCGYC	1 cut(s)	6
Hsp92II	CATG	4 cut(s)	21, 613, 828, 913
KpnI	GGTACC	2 cut(s)	649, 938
Kzo9I	GATC	5 cut(s)	746, 784, 867, 964, 976
LmnI	GCTCC	5 cut(s)	26, 59, 363, 508, 768
Lsp1109I	GCAGC	3 cut(s)	175, 265, 342
LweI	GCATC	1 cut(s)	239
MaeI	CTAG	4 cut(s)	447, 881, 1023, 1145
MaeII	ACGT	2 cut(s)	439, 835
MalI	GATC	5 cut(s)	748, 786, 869, 966, 978
MbiI	CCGCTC	1 cut(s)	69
MboI	GATC	5 cut(s)	746, 784, 867, 964, 976
MboII	GAAGA	8 cut(s)	90, 215, 256, 350, 455, 781, 910, 1133
MfeI	CAATTG	1 cut(s)	120
MflI	RGATCY	1 cut(s)	964
MhlI	GDGCHC	5 cut(s)	107, 185, 505, 765, 928
MlsI	TGGCCA	1 cut(s)	1122
MluCI	AATT	7 cut(s)	80, 120, 173, 482, 675, 725, 820
MluNI	TGGCCA	1 cut(s)	1122
MlyI	GAGTC	2 cut(s)	323, 950
MmeI	TCCRAC	2 cut(s)	81, 328
Mox20I	TGGCCA	1 cut(s)	1122
MroXI	GAANNNNTTC	2 cut(s)	666, 773
MscI	TGGCCA	1 cut(s)	1122
MseI	TTAA	4 cut(s)	78, 411, 678, 849
MslI	CAYNNNNRTG	1 cut(s)	614
Msp20I	TGGCCA	1 cut(s)	1122
MspI	CCGG	3 cut(s)	24, 51, 428
MspR9I	CCNGG	2 cut(s)	428, 697
MunI	CAATTG	1 cut(s)	120
Mva1269I	GAATGC	1 cut(s)	639
MvaI	CCWGG	1 cut(s)	697
MvnI	CGCG	1 cut(s)	113
NciI	CCSGG	1 cut(s)	428
NdeII	GATC	5 cut(s)	746, 784, 867, 964, 976
NlaIII	CATG	4 cut(s)	21, 613, 828, 913
NlaIV	GGNNCC	4 cut(s)	55, 376, 647, 936
NmeAIII	GCCGAG	1 cut(s)	1088
NspI	RCATGY	1 cut(s)	613
PagI	TCATGA	1 cut(s)	909
PctI	GAATGC	1 cut(s)	639
PdmI	GAANNNNTTC	2 cut(s)	666, 773
PfeI	GAWTC	4 cut(s)	153, 364, 599, 1029
PkrI	GCNGC	4 cut(s)	10, 190, 280, 357
PleI	GAGTC	2 cut(s)	322, 950
PpsI	GAGTC	2 cut(s)	322, 950
PpuMI	RGGWCCY	1 cut(s)	374
PsiI	TTATAA	1 cut(s)	818
Psp124BI	GAGCTC	1 cut(s)	505
Psp5II	RGGWCCY	1 cut(s)	374
Psp6I	CCWGG	1 cut(s)	695
PspGI	CCWGG	1 cut(s)	695
PspN4I	GGNNCC	4 cut(s)	55, 376, 647, 936
PspPI	GGNCC	3 cut(s)	374, 780, 1070
PspPPI	RGGWCCY	1 cut(s)	374
PsuI	RGATCY	1 cut(s)	964
RsaI	GTAC	4 cut(s)	641, 647, 936, 1077
RsaNI	GTAC	4 cut(s)	640, 646, 935, 1076
RseI	CAYNNNNRTG	1 cut(s)	614
SacI	GAGCTC	1 cut(s)	505
SaqAI	TTAA	4 cut(s)	78, 411, 678, 849
SatI	GCNGC	4 cut(s)	9, 189, 279, 356
Sau3AI	GATC	5 cut(s)	746, 784, 867, 964, 976
Sau96I	GGNCC	3 cut(s)	374, 780, 1070
SchI	GAGTC	2 cut(s)	323, 950
ScrFI	CCNGG	2 cut(s)	428, 697
SduI	GDGCHC	5 cut(s)	107, 185, 505, 765, 928
SfaNI	GCATC	1 cut(s)	239
SinI	GGWCC	3 cut(s)	374, 780, 1070
SmiMI	CAYNNNNRTG	1 cut(s)	614
Sse9I	AATT	7 cut(s)	80, 120, 173, 482, 675, 725, 820
SsiI	CCGC	7 cut(s)	9, 67, 128, 240, 281, 335, 637
SspMI	CTAG	4 cut(s)	447, 881, 1023, 1145
SstI	GAGCTC	1 cut(s)	505
StyD4I	CCNGG	2 cut(s)	426, 695
StyI	CCWWGG	1 cut(s)	446
TaiI	ACGT	2 cut(s)	442, 838
TaqI	TCGA	2 cut(s)	194, 499
TaqII	GACCGA	1 cut(s)	797
TasI	AATT	7 cut(s)	80, 120, 173, 482, 675, 725, 820
TatI	WGTACW	1 cut(s)	1075
TauI	GCSGC	1 cut(s)	11
TfiI	GAWTC	4 cut(s)	153, 364, 599, 1029
Tru1I	TTAA	4 cut(s)	78, 411, 678, 849
Tru9I	TTAA	4 cut(s)	78, 411, 678, 849
TscAI	CASTG	6 cut(s)	480, 588, 621, 661, 928, 1102
TseI	GCWGC	3 cut(s)	188, 278, 355
TspRI	CASTG	6 cut(s)	480, 588, 621, 661, 928, 1102
VpaK11BI	GGWCC	3 cut(s)	374, 780, 1070
XapI	RAATTY	3 cut(s)	80, 173, 820
XceI	RCATGY	1 cut(s)	613
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1064
XmaJI	CCTAGG	1 cut(s)	446
XmiI	GTMKAC	1 cut(s)	442
XmnI	GAANNNNTTC	2 cut(s)	666, 773
XspI	CTAG	4 cut(s)	447, 881, 1023, 1145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.