Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0016418

Physical Location & Seq

Genomic Coordinates Forward (+)

5923436 .. 5926638

Gene Structure 3203 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGGGAGAGTGAAGCTTCAGATCAAAAGGATTGAGAATACGACCAATAGGCAAGTCACTTTCTCAAAAAGAAGAAACGGGCTTATCAAGAAAGCCTATGAACTCTCTGTTCTGTGCGATGTTGATGTTGCTCTCATCATGTTTTCTTCATCTGGGAGACTTAGTCTCTTCTCTGGAAATAAAAGCATTGAAGAGACTCTGGCACGGTATATTAATCTTCCCGCCAATCAGCGAGGACGTCAGCATAATCAAGAGGTTCTCCAAAGCGTTCTTGGTAAATTGTGGAGGGAAGCTGATCAAACCTATCAAGCAACCAGTCCGATGAGTGGTACTGATTCGGATCAACTGGAGGAGATTCAACAAGACATCGTATGCTGCAAATCACAATTGGAAGAAATGGGAAATCGACTAAGGATCTTTGAAGCAGAGGATCTCTCTGAAATCAGGACATTGCATGACGCTGAGTACCGGGAACAGATCCTTGAGGAAACTCTAAAACGTTTGCGCGTGCGCAAGCAAGTTCTGGAGGAGTATGATTCTTCTGCTACAATACTACAGCTACCTACAGCTACAACAAATATACATGAACTTGTTACAGGAAGTCCACACAATATTCTAGTTGATTGGCTTCTACAAGGAGATCCACAAGTTCAGATTGTAAACTTTTTGAATTCAAATGGCTCTCTTCCCCTAAGAGATCAGCCAGCTGAAAGTAGATTTGACGCCATAGCTTCCCAATCAGCACTTGTTAGCGGACAAAATAGGAGTGTTGATGAGCATCGCAGCACAGGAAAGGGTTTGGAGGATGACAATAATGGGTTGCAGCGTCAAGAATTAGGACAAGTTATTGATGTCAACTTTTCCGCGTGGAAGGATTTCTATCCGACAGCTTCTTCAAGTGGACGAGGACTCTATATGTCATCACAGTTCAATCCACCACCAAGCATCTTGCACCCCAATCAAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009908 GO:0010093 GO:0010097 GO:0022414 GO:0032501 GO:0032502 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko04010 ko04013 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04013 map04022 map04371 map04921 map05202 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

323

Amino Acids

36.38

Weight (kDa)

5.41

Isoelectric Point (pI)

63.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 55	1.3e-25	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0016418)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G427500_v2.0.a1 Prupe.1G427600_v2.0.a1
pyrus_communis	pycom08g07350
rosa_chinensis	RchiOBHm_Chr6g0295371 RchiOBHm_Chr6g0295381
rosa_laevigata	RLG00000011811
rosa_multiflora	Rmu_sc0003058.1_g000013 Rmu_sc0031171.1_g000001
rosa_roxburghii	Rroxscaffold_7G00172550
rosa_rugosa	Rorug06G0250300
rosa_samantha	Rh6AG363500 Rh6BG371700 Rh6CG378100 Rh6DG364300
rosa_wichuraiana	Rw6G031730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	241
Acc16I	TGCGCA	1 cut(s)	512
AccII	CGCG	2 cut(s)	507, 866
AciI	CCGC	3 cut(s)	222, 753, 864
AclI	AACGTT	1 cut(s)	499
AclWI	GGATC	5 cut(s)	348, 422, 438, 472, 635
AcsI	RAATTY	1 cut(s)	670
AcyI	GRCGYC	2 cut(s)	238, 723
AfaI	GTAC	2 cut(s)	331, 467
AfiI	CCNNNNNNNGG	1 cut(s)	326
AgsI	TTSAA	7 cut(s)	191, 359, 422, 670, 675, 897, 931
AluBI	AGCT	7 cut(s)	16, 293, 559, 569, 707, 731, 890
AluI	AGCT	7 cut(s)	16, 293, 559, 569, 707, 731, 890
Alw26I	GTCTC	3 cut(s)	151, 170, 188
AlwI	GGATC	5 cut(s)	348, 422, 438, 472, 635
ApeKI	GCWGC	3 cut(s)	375, 783, 823
ApoI	RAATTY	1 cut(s)	670
AseI	ATTAAT	1 cut(s)	213
Asp700I	GAANNNNTTC	1 cut(s)	875
AspLEI	GCGC	2 cut(s)	507, 513
AsuC2I	CCSGG	1 cut(s)	470
BbvI	GCAGC	3 cut(s)	362, 795, 835
BclI	TGATCA	1 cut(s)	295
BcnI	CCSGG	1 cut(s)	470
BcoDI	GTCTC	3 cut(s)	151, 170, 188
BfaI	CTAG	1 cut(s)	617
BfmI	CTRYAG	2 cut(s)	554, 564
BisI	GCNGC	3 cut(s)	376, 784, 824
BlsI	GCNGC	3 cut(s)	377, 785, 825
Bme1390I	CCNGG	1 cut(s)	470
BmrFI	CCNGG	1 cut(s)	470
BmsI	GCATC	2 cut(s)	787, 954
BplI	GAGNNNNNCTC	2 cut(s)	419, 451
BpmI	CTGGAG	2 cut(s)	368, 545
BpuEI	CTTGAG	1 cut(s)	503
BpuMI	CCSGG	1 cut(s)	470
BsaBI	GATNNNNATC	3 cut(s)	339, 777, 879
BsaHI	GRCGYC	2 cut(s)	238, 723
BsaXI	ACNNNNNCTCC	2 cut(s)	148, 178
Bsc4I	CCNNNNNNNGG	1 cut(s)	326
Bse1I	ACTGG	2 cut(s)	315, 351
Bse3DI	GCAATG	1 cut(s)	449
Bse8I	GATNNNNATC	3 cut(s)	339, 777, 879
BseGI	GGATG	1 cut(s)	811
BseJI	GATNNNNATC	3 cut(s)	339, 777, 879
BseLI	CCNNNNNNNGG	1 cut(s)	326
BseMI	GCAATG	1 cut(s)	449
BseMII	CTCAG	1 cut(s)	453
BseNI	ACTGG	2 cut(s)	315, 351
BseRI	GAGGAG	2 cut(s)	365, 542
BseXI	GCAGC	3 cut(s)	362, 795, 835
Bsh1236I	CGCG	2 cut(s)	507, 866
BsiSI	CCGG	1 cut(s)	469
BslI	CCNNNNNNNGG	1 cut(s)	326
BsmAI	GTCTC	3 cut(s)	151, 170, 188
Bsp143I	GATC	8 cut(s)	21, 295, 340, 414, 430, 477, 640, 697
BspACI	CCGC	3 cut(s)	222, 753, 864
BspCNI	CTCAG	1 cut(s)	454
BspFNI	CGCG	2 cut(s)	507, 866
BspPI	GGATC	5 cut(s)	348, 422, 438, 472, 635
BsrDI	GCAATG	1 cut(s)	449
BsrI	ACTGG	2 cut(s)	315, 351
BssMI	GATC	8 cut(s)	21, 295, 340, 414, 430, 477, 640, 697
BssNI	GRCGYC	2 cut(s)	238, 723
Bst4CI	ACNGT	2 cut(s)	207, 927
Bst6I	CTCTTC	3 cut(s)	173, 186, 690
BstACI	GRCGYC	2 cut(s)	238, 723
BstC8I	GCNNGC	3 cut(s)	509, 515, 705
BstDEI	CTNAG	4 cut(s)	161, 410, 462, 692
BstF5I	GGATG	1 cut(s)	811
BstFNI	CGCG	2 cut(s)	507, 866
BstHHI	GCGC	2 cut(s)	507, 513
BstKTI	GATC	8 cut(s)	24, 298, 343, 417, 433, 480, 643, 700
BstMAI	GTCTC	3 cut(s)	151, 170, 188
BstMBI	GATC	8 cut(s)	21, 295, 340, 414, 430, 477, 640, 697
BstSCI	CCNGG	1 cut(s)	468
BstSFI	CTRYAG	2 cut(s)	554, 564
BstUI	CGCG	2 cut(s)	507, 866
BstV1I	GCAGC	3 cut(s)	362, 795, 835
BstX2I	RGATCY	4 cut(s)	414, 430, 477, 640
BstYI	RGATCY	4 cut(s)	414, 430, 477, 640
BtgZI	GCGATG	2 cut(s)	132, 764
BtsCI	GGATG	1 cut(s)	811
Cac8I	GCNNGC	3 cut(s)	509, 515, 705
CfoI	GCGC	2 cut(s)	507, 513
CseI	GACGC	3 cut(s)	467, 731, 815
Csp6I	GTAC	2 cut(s)	330, 466
CviAII	CATG	3 cut(s)	139, 455, 584
CviQI	GTAC	2 cut(s)	330, 466
DdeI	CTNAG	4 cut(s)	161, 410, 462, 692
DpnI	GATC	8 cut(s)	23, 297, 342, 416, 432, 479, 642, 699
DpnII	GATC	8 cut(s)	21, 295, 340, 414, 430, 477, 640, 697
Eam1104I	CTCTTC	3 cut(s)	173, 186, 690
EarI	CTCTTC	3 cut(s)	173, 186, 690
EcoRI	GAATTC	1 cut(s)	670
FaeI	CATG	3 cut(s)	142, 458, 587
FatI	CATG	3 cut(s)	138, 454, 583
FauI	CCCGC	1 cut(s)	229
FbaI	TGATCA	1 cut(s)	295
Fnu4HI	GCNGC	3 cut(s)	376, 784, 824
FokI	GGATG	1 cut(s)	818
Fsp4HI	GCNGC	3 cut(s)	376, 784, 824
FspBI	CTAG	1 cut(s)	617
FspI	TGCGCA	1 cut(s)	512
GlaI	GCGC	2 cut(s)	506, 512
GluI	GCNGC	3 cut(s)	376, 784, 824
GsuI	CTGGAG	2 cut(s)	368, 545
HapII	CCGG	1 cut(s)	469
HgaI	GACGC	3 cut(s)	467, 731, 815
HhaI	GCGC	2 cut(s)	507, 513
Hin1I	GRCGYC	2 cut(s)	238, 723
Hin1II	CATG	3 cut(s)	142, 458, 587
Hin6I	GCGC	2 cut(s)	505, 511
HinP1I	GCGC	2 cut(s)	505, 511
HincII	GTYRAC	1 cut(s)	856
HindII	GTYRAC	1 cut(s)	856
HindIII	AAGCTT	1 cut(s)	14
HinfI	GANTC	5 cut(s)	196, 335, 355, 536, 909
HpaII	CCGG	1 cut(s)	469
Hpy166II	GTNNAC	4 cut(s)	605, 661, 856, 902
Hpy188I	TCNGA	6 cut(s)	21, 321, 340, 439, 654, 885
Hpy188III	TCNNGA	7 cut(s)	88, 174, 251, 445, 524, 830, 962
Hpy8I	GTNNAC	4 cut(s)	605, 661, 856, 902
HpyAV	CCTTC	1 cut(s)	865
HpyCH4III	ACNGT	2 cut(s)	207, 927
HpyCH4IV	ACGT	2 cut(s)	238, 499
HpyCH4V	TGCA	4 cut(s)	378, 454, 823, 952
HpyF3I	CTNAG	4 cut(s)	161, 410, 462, 692
HpySE526I	ACGT	2 cut(s)	238, 499
Hsp92I	GRCGYC	2 cut(s)	238, 723
Hsp92II	CATG	3 cut(s)	142, 458, 587
HspAI	GCGC	2 cut(s)	505, 511
Ksp22I	TGATCA	1 cut(s)	295
Kzo9I	GATC	8 cut(s)	21, 295, 340, 414, 430, 477, 640, 697
Lsp1109I	GCAGC	3 cut(s)	362, 795, 835
LweI	GCATC	2 cut(s)	787, 954
MaeI	CTAG	1 cut(s)	617
MaeII	ACGT	2 cut(s)	238, 499
MaeIII	GTNAC	2 cut(s)	55, 592
MalI	GATC	8 cut(s)	23, 297, 342, 416, 432, 479, 642, 699
MboI	GATC	8 cut(s)	21, 295, 340, 414, 430, 477, 640, 697
MboII	GAAGA	9 cut(s)	84, 138, 160, 203, 209, 404, 531, 677, 885
MfeI	CAATTG	1 cut(s)	386
MflI	RGATCY	4 cut(s)	414, 430, 477, 640
MluCI	AATT	4 cut(s)	278, 386, 670, 833
MlyI	GAGTC	2 cut(s)	190, 903
MmeI	TCCRAC	1 cut(s)	908
MnlI	CCTC	9 cut(s)	227, 247, 279, 343, 421, 478, 520, 796, 899
MroXI	GAANNNNTTC	1 cut(s)	875
MseI	TTAA	2 cut(s)	213, 967
MspA1I	CMGCKG	1 cut(s)	707
MspI	CCGG	1 cut(s)	469
MspR9I	CCNGG	1 cut(s)	470
MunI	CAATTG	1 cut(s)	386
MvnI	CGCG	2 cut(s)	507, 866
NciI	CCSGG	1 cut(s)	470
NdeII	GATC	8 cut(s)	21, 295, 340, 414, 430, 477, 640, 697
NlaIII	CATG	3 cut(s)	142, 458, 587
NmuCI	GTSAC	1 cut(s)	55
NsbI	TGCGCA	1 cut(s)	512
PdmI	GAANNNNTTC	1 cut(s)	875
PfeI	GAWTC	3 cut(s)	335, 355, 536
PflFI	GACNNNGTC	1 cut(s)	162
PkrI	GCNGC	3 cut(s)	377, 785, 825
PleI	GAGTC	2 cut(s)	190, 903
PpsI	GAGTC	2 cut(s)	190, 903
PshBI	ATTAAT	1 cut(s)	213
Psp1406I	AACGTT	1 cut(s)	499
PsuI	RGATCY	4 cut(s)	414, 430, 477, 640
PsyI	GACNNNGTC	1 cut(s)	162
PvuII	CAGCTG	1 cut(s)	707
RsaI	GTAC	2 cut(s)	331, 467
RsaNI	GTAC	2 cut(s)	330, 466
SaqAI	TTAA	2 cut(s)	213, 967
SatI	GCNGC	3 cut(s)	376, 784, 824
Sau3AI	GATC	8 cut(s)	21, 295, 340, 414, 430, 477, 640, 697
SchI	GAGTC	2 cut(s)	190, 903
ScrFI	CCNGG	1 cut(s)	470
SfaNI	GCATC	2 cut(s)	787, 954
SfcI	CTRYAG	2 cut(s)	554, 564
SmlI	CTYRAG	1 cut(s)	482
SmoI	CTYRAG	1 cut(s)	482
Sse9I	AATT	4 cut(s)	278, 386, 670, 833
SsiI	CCGC	3 cut(s)	222, 753, 864
SspI	AATATT	1 cut(s)	613
SspMI	CTAG	1 cut(s)	617
StyD4I	CCNGG	1 cut(s)	468
TaaI	ACNGT	2 cut(s)	207, 927
TaiI	ACGT	2 cut(s)	241, 502
TaqI	TCGA	1 cut(s)	406
TasI	AATT	4 cut(s)	278, 386, 670, 833
TfiI	GAWTC	3 cut(s)	335, 355, 536
Tru1I	TTAA	2 cut(s)	213, 967
Tru9I	TTAA	2 cut(s)	213, 967
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	3 cut(s)	375, 783, 823
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	3 cut(s)	114, 138, 600
Tth111I	GACNNNGTC	1 cut(s)	162
VspI	ATTAAT	1 cut(s)	213
XapI	RAATTY	1 cut(s)	670
XcmI	CCANNNNNNNNNTGG	1 cut(s)	269
XmnI	GAANNNNTTC	1 cut(s)	875
XspI	CTAG	1 cut(s)	617
ZraI	GACGTC	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.