pycom08g08960

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0016021
Physical Location & Seq
Forward (+)
7236103 .. 7237044
942 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 942 bp
ATGGGTTCCTGCATTAGCAAATGCTCATCCAAAAAACACTTTCTACAAGAATTTAACAATGTCCAAGACAAGTTGGTGATTTCACAACCTCCTCCTAGGATCACCATCCCTCCAATTTCTGCTTCCAGCAAAATCTCACCTTGTCCTCAATCCCCTTGCAACTCCAGTTCCTCTGCCTCCTCTATCACTTGCACCACAAGCACTTCCAACTCAAGCGCTTCCTCATTGAGCTCAGCCTTGTCAAGTGCTTCTACGGTCTCCAGCTCGAAAATCGACCGGTCTTTCTCCAACGAGTTCTTGTGGTCGTGTTACAAGGAAAACCCGCATGTCATTCGGATTAACTCGATCAAAGACGCAAGCTTTTCGAGGTTTTCCTCATCGGCATTGCCACAAAAGCCAGTTTTGGCCACATGGGTGAACAAGAAGCTGAACAAGAAGCAGCCACCGAGCCCAAAAAGGGGAAATGTGTCAGTTACACCACAGAAGAGAGTGAGATCAAGCTCACCTACTTCTCTAGGAAGGCAAAAGAGCTTCCGAAAAGAGCCAGAGAGGCCAATGATCTCTGCATATTCACATCCAAGTAGAACCTTGAGGTCACCCGCTCCAAGTAGAAGGTTCAACATGCCAATCCCCCCCAAAGAAAGCCATTTGAGCCCTAATAATGCATTGAATGTTAGGCGTGCAGGTTCAAATTGTTGCGCAACTAAATCCACATCCAGAGCTCGTATCGAGCCACACAACCCCAACATAAATTACAACAATTCGAGCCGGCTTCTTCGGCCGTGTTTGAAGAGCAGAGAAACAGAGATGAGAATTCACAGGATCACATCTAAAATTGATGAGGTTGCAGCTGGAGAAGCAGTAGTTGACTATATGGACTCACTTCCTGCTGAGGACATTGATAACCCTTTACTATCTCTTGATTGTTTTATTTTCGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

314

Amino Acids

34.41

Weight (kDa)

10.01

Isoelectric Point (pI)

72.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016021)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21510
fragaria_vesca FvH4_2g35040
malus_domestica MD15G1088100.v1.1
prunus_persica Prupe.1G442100_v2.0.a1
pyrus_communis pycom08g08960
rosa_chinensis RchiOBHm_Chr6g0306951
rosa_laevigata RLG00000010751
rosa_multiflora Rmu_sc0007920.1_g000035
rosa_roxburghii Rroxscaffold_7G00161330
rosa_rugosa Rorug06G0354700
rosa_samantha Rh6AG466400 Rh6BG434600 Rh6CG481300 Rh6DG467700
rosa_wichuraiana Rw6G040630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 700
Acc36I ACCTGC 1 cut(s) 674
AccBSI CCGCTC 1 cut(s) 602
AciI CCGC 2 cut(s) 323, 600
AclWI GGATC 2 cut(s) 107, 830
AcoI YGGCCR 2 cut(s) 405, 779
AcsI RAATTY 2 cut(s) 50, 813
AfeI AGCGCT 1 cut(s) 217
AfiI CCNNNNNNNGG 2 cut(s) 457, 458
AgeI ACCGGT 1 cut(s) 276
AgsI TTSAA 4 cut(s) 619, 670, 690, 790
AjuI GAANNNNNNNTTGG 2 cut(s) 106, 138
AleI CACNNNNGTG 1 cut(s) 413
AluBI AGCT 8 cut(s) 231, 264, 360, 427, 501, 531, 722, 851
AluI AGCT 8 cut(s) 231, 264, 360, 427, 501, 531, 722, 851
Alw21I GWGCWC 2 cut(s) 233, 724
Alw26I GTCTC 1 cut(s) 262
AlwI GGATC 2 cut(s) 107, 830
Aor51HI AGCGCT 1 cut(s) 217
AoxI GGCC 3 cut(s) 405, 551, 779
ApeKI GCWGC 2 cut(s) 439, 848
ApoI RAATTY 2 cut(s) 50, 813
AsiGI ACCGGT 1 cut(s) 276
AspA2I CCTAGG 1 cut(s) 95
AspLEI GCGC 2 cut(s) 218, 701
AsuHPI GGTGA 6 cut(s) 88, 94, 129, 427, 495, 588
AvrII CCTAGG 1 cut(s) 95
BalI TGGCCA 1 cut(s) 407
BanII GRGCYC 4 cut(s) 233, 452, 656, 724
Bbv12I GWGCWC 2 cut(s) 233, 724
BbvCI CCTCAGC 1 cut(s) 891
BbvI GCAGC 2 cut(s) 451, 860
BccI CCATC 1 cut(s) 113
BceAI ACGGC 1 cut(s) 766
BcgI CGANNNNNNTGC 4 cut(s) 314, 345, 348, 379
BcoDI GTCTC 1 cut(s) 262
BfaI CTAG 2 cut(s) 96, 515
BfoI RGCGCY 1 cut(s) 219
BfuAI ACCTGC 1 cut(s) 674
BglI GCCNNNNNGGC 1 cut(s) 550
BisI GCNGC 2 cut(s) 440, 849
BlnI CCTAGG 1 cut(s) 95
BlpI GCTNAGC 1 cut(s) 232
BlsI GCNGC 2 cut(s) 441, 850
BmiI GGNNCC 1 cut(s) 7
BpmI CTGGAG 3 cut(s) 148, 244, 873
Bpu10I CCTNAGC 1 cut(s) 891
Bpu1102I GCTNAGC 1 cut(s) 232
BpuEI CTTGAG 2 cut(s) 196, 610
BsaBI GATNNNNATC 1 cut(s) 104
BsaI GGTCTC 1 cut(s) 262
BsaJI CCNNGG 1 cut(s) 95
BsaWI WCCGGW 1 cut(s) 276
BsaXI ACNNNNNCTCC 4 cut(s) 94, 124, 846, 876
Bsc4I CCNNNNNNNGG 2 cut(s) 457, 458
Bse118I RCCGGY 2 cut(s) 276, 768
Bse1I ACTGG 2 cut(s) 165, 398
Bse3DI GCAATG 1 cut(s) 383
Bse8I GATNNNNATC 1 cut(s) 104
BseDI CCNNGG 1 cut(s) 95
BseGI GGATG 4 cut(s) 26, 105, 574, 713
BseJI GATNNNNATC 1 cut(s) 104
BseLI CCNNNNNNNGG 2 cut(s) 457, 458
BseMI GCAATG 1 cut(s) 383
BseMII CTCAG 2 cut(s) 246, 882
BseNI ACTGG 2 cut(s) 165, 398
BseRI GAGGAG 2 cut(s) 81, 169
BseX3I CGGCCG 1 cut(s) 779
BseXI GCAGC 2 cut(s) 451, 860
BsgI GTGCAG 1 cut(s) 702
Bsh1285I CGRYCG 2 cut(s) 277, 782
BshFI GGCC 3 cut(s) 407, 553, 781
BshTI ACCGGT 1 cut(s) 276
BsiEI CGRYCG 2 cut(s) 277, 782
BsiHKAI GWGCWC 2 cut(s) 233, 724
BsiSI CCGG 2 cut(s) 277, 769
BslI CCNNNNNNNGG 2 cut(s) 457, 458
BsmAI GTCTC 1 cut(s) 262
BsnI GGCC 3 cut(s) 407, 553, 781
Bso31I GGTCTC 1 cut(s) 262
Bsp1286I GDGCHC 4 cut(s) 233, 452, 656, 724
Bsp143I GATC 5 cut(s) 99, 345, 494, 558, 822
Bsp1720I GCTNAGC 1 cut(s) 232
BspACI CCGC 2 cut(s) 323, 600
BspANI GGCC 3 cut(s) 407, 553, 781
BspCNI CTCAG 2 cut(s) 245, 883
BspLI GGNNCC 1 cut(s) 7
BspMI ACCTGC 1 cut(s) 674
BspPI GGATC 2 cut(s) 107, 830
BspQI GCTCTTC 1 cut(s) 785
BspTNI GGTCTC 1 cut(s) 262
BsrBI CCGCTC 1 cut(s) 602
BsrDI GCAATG 1 cut(s) 383
BsrFI RCCGGY 2 cut(s) 276, 768
BsrI ACTGG 2 cut(s) 165, 398
BssAI RCCGGY 2 cut(s) 276, 768
BssECI CCNNGG 1 cut(s) 95
BssMI GATC 5 cut(s) 99, 345, 494, 558, 822
BssT1I CCWWGG 1 cut(s) 95
Bst4CI ACNGT 1 cut(s) 256
Bst6I CTCTTC 2 cut(s) 479, 785
BstC8I GCNNGC 3 cut(s) 358, 681, 770
BstDEI CTNAG 2 cut(s) 232, 891
BstEII GGTNACC 1 cut(s) 594
BstF5I GGATG 4 cut(s) 26, 105, 574, 713
BstH2I RGCGCY 1 cut(s) 219
BstHHI GCGC 2 cut(s) 218, 701
BstKTI GATC 5 cut(s) 102, 348, 497, 561, 825
BstMAI GTCTC 1 cut(s) 262
BstMBI GATC 5 cut(s) 99, 345, 494, 558, 822
BstMCI CGRYCG 2 cut(s) 277, 782
BstMWI GCNNNNNNNGC 6 cut(s) 198, 394, 550, 651, 778, 857
BstNSI RCATGY 2 cut(s) 329, 625
BstPI GGTNACC 1 cut(s) 594
BstV1I GCAGC 2 cut(s) 451, 860
BstZI CGGCCG 1 cut(s) 779
BsuRI GGCC 3 cut(s) 407, 553, 781
BtsCI GGATG 4 cut(s) 26, 105, 574, 713
BveI ACCTGC 1 cut(s) 674
Cac8I GCNNGC 3 cut(s) 358, 681, 770
CfoI GCGC 2 cut(s) 218, 701
Cfr10I RCCGGY 2 cut(s) 276, 768
CseI GACGC 1 cut(s) 362
CspAI ACCGGT 1 cut(s) 276
CviAII CATG 3 cut(s) 326, 411, 622
DdeI CTNAG 2 cut(s) 232, 891
DpnI GATC 5 cut(s) 101, 347, 496, 560, 824
DpnII GATC 5 cut(s) 99, 345, 494, 558, 822
EaeI YGGCCR 2 cut(s) 405, 779
EagI CGGCCG 1 cut(s) 779
Eam1104I CTCTTC 2 cut(s) 479, 785
EarI CTCTTC 2 cut(s) 479, 785
Ecl136II GAGCTC 2 cut(s) 231, 722
EclXI CGGCCG 1 cut(s) 779
Eco130I CCWWGG 1 cut(s) 95
Eco24I GRGCYC 4 cut(s) 233, 452, 656, 724
Eco31I GGTCTC 1 cut(s) 262
Eco47III AGCGCT 1 cut(s) 217
Eco52I CGGCCG 1 cut(s) 779
Eco53kI GAGCTC 2 cut(s) 231, 722
Eco91I GGTNACC 1 cut(s) 594
EcoICRI GAGCTC 2 cut(s) 231, 722
EcoO65I GGTNACC 1 cut(s) 594
EcoRI GAATTC 1 cut(s) 813
EcoT14I CCWWGG 1 cut(s) 95
EcoT22I ATGCAT 1 cut(s) 667
EcoT38I GRGCYC 4 cut(s) 233, 452, 656, 724
ErhI CCWWGG 1 cut(s) 95
FaeI CATG 3 cut(s) 329, 414, 625
FaiI YATR 7 cut(s) 327, 412, 568, 623, 749, 873, 875
FatI CATG 3 cut(s) 325, 410, 621
FauI CCCGC 2 cut(s) 330, 607
Fnu4HI GCNGC 2 cut(s) 440, 849
FokI GGATG 4 cut(s) 13, 92, 561, 700
FriOI GRGCYC 4 cut(s) 233, 452, 656, 724
Fsp4HI GCNGC 2 cut(s) 440, 849
FspBI CTAG 2 cut(s) 96, 515
FspI TGCGCA 1 cut(s) 700
GlaI GCGC 2 cut(s) 217, 700
GluI GCNGC 2 cut(s) 440, 849
GsuI CTGGAG 3 cut(s) 148, 244, 873
HaeII RGCGCY 1 cut(s) 219
HaeIII GGCC 3 cut(s) 407, 553, 781
HapII CCGG 2 cut(s) 277, 769
HgaI GACGC 1 cut(s) 362
HhaI GCGC 2 cut(s) 218, 701
Hin1II CATG 3 cut(s) 329, 414, 625
Hin6I GCGC 2 cut(s) 216, 699
HinP1I GCGC 2 cut(s) 216, 699
HincII GTYRAC 1 cut(s) 868
HindII GTYRAC 1 cut(s) 868
HindIII AAGCTT 1 cut(s) 358
HinfI GANTC 1 cut(s) 878
HpaII CCGG 2 cut(s) 277, 769
HphI GGTGA 6 cut(s) 88, 94, 129, 427, 495, 588
Hpy166II GTNNAC 2 cut(s) 418, 868
Hpy188I TCNGA 2 cut(s) 336, 536
Hpy188III TCNNGA 2 cut(s) 717, 920
Hpy8I GTNNAC 2 cut(s) 418, 868
HpyAV CCTTC 2 cut(s) 513, 606
HpyCH4III ACNGT 1 cut(s) 256
HpyCH4V TGCA 7 cut(s) 12, 159, 192, 566, 665, 683, 848
HpyF10VI GCNNNNNNNGC 6 cut(s) 198, 394, 550, 651, 778, 857
HpyF3I CTNAG 2 cut(s) 232, 891
Hsp92II CATG 3 cut(s) 329, 414, 625
HspAI GCGC 2 cut(s) 216, 699
KroI GCCGGC 1 cut(s) 768
KroNI GCCGGC 1 cut(s) 770
Kzo9I GATC 5 cut(s) 99, 345, 494, 558, 822
LguI GCTCTTC 1 cut(s) 785
LmnI GCTCC 1 cut(s) 607
Lsp1109I GCAGC 2 cut(s) 451, 860
MaeI CTAG 2 cut(s) 96, 515
MaeIII GTNAC 3 cut(s) 308, 472, 594
MalI GATC 5 cut(s) 101, 347, 496, 560, 824
MbiI CCGCTC 1 cut(s) 602
MboI GATC 5 cut(s) 99, 345, 494, 558, 822
MboII GAAGA 3 cut(s) 496, 767, 802
MhlI GDGCHC 4 cut(s) 233, 452, 656, 724
MlsI TGGCCA 1 cut(s) 407
MluCI AATT 7 cut(s) 50, 114, 691, 751, 760, 813, 834
MluNI TGGCCA 1 cut(s) 407
MlyI GAGTC 1 cut(s) 872
MmeI TCCRAC 2 cut(s) 231, 312
Mox20I TGGCCA 1 cut(s) 407
Mph1103I ATGCAT 1 cut(s) 667
MroNI GCCGGC 1 cut(s) 768
MscI TGGCCA 1 cut(s) 407
MseI TTAA 2 cut(s) 54, 339
MslI CAYNNNNRTG 1 cut(s) 413
Msp20I TGGCCA 1 cut(s) 407
MspA1I CMGCKG 1 cut(s) 851
MspI CCGG 2 cut(s) 277, 769
MwoI GCNNNNNNNGC 6 cut(s) 198, 394, 550, 651, 778, 857
NaeI GCCGGC 1 cut(s) 770
NdeII GATC 5 cut(s) 99, 345, 494, 558, 822
NgoMIV GCCGGC 1 cut(s) 768
NlaIII CATG 3 cut(s) 329, 414, 625
NlaIV GGNNCC 1 cut(s) 7
NmuCI GTSAC 1 cut(s) 594
NsbI TGCGCA 1 cut(s) 700
NsiI ATGCAT 1 cut(s) 667
NspI RCATGY 2 cut(s) 329, 625
OliI CACNNNNGTG 1 cut(s) 413
PciSI GCTCTTC 1 cut(s) 785
PdiI GCCGGC 1 cut(s) 770
PinAI ACCGGT 1 cut(s) 276
PkrI GCNGC 2 cut(s) 441, 850
PleI GAGTC 1 cut(s) 872
PpsI GAGTC 1 cut(s) 872
Psp124BI GAGCTC 2 cut(s) 233, 724
PspEI GGTNACC 1 cut(s) 594
PspN4I GGNNCC 1 cut(s) 7
PvuII CAGCTG 1 cut(s) 851
RseI CAYNNNNRTG 1 cut(s) 413
SacI GAGCTC 2 cut(s) 233, 724
SapI GCTCTTC 1 cut(s) 785
SaqAI TTAA 2 cut(s) 54, 339
SatI GCNGC 2 cut(s) 440, 849
Sau3AI GATC 5 cut(s) 99, 345, 494, 558, 822
SchI GAGTC 1 cut(s) 872
SduI GDGCHC 4 cut(s) 233, 452, 656, 724
SmiMI CAYNNNNRTG 1 cut(s) 413
SmlI CTYRAG 2 cut(s) 211, 589
SmoI CTYRAG 2 cut(s) 211, 589
Sse9I AATT 7 cut(s) 50, 114, 691, 751, 760, 813, 834
SsiI CCGC 2 cut(s) 323, 600
SspMI CTAG 2 cut(s) 96, 515
SstI GAGCTC 2 cut(s) 233, 724
StyI CCWWGG 1 cut(s) 95
TaaI ACNGT 1 cut(s) 256
TaqI TCGA 6 cut(s) 266, 273, 344, 365, 729, 764
TasI AATT 7 cut(s) 50, 114, 691, 751, 760, 813, 834
Tru1I TTAA 2 cut(s) 54, 339
Tru9I TTAA 2 cut(s) 54, 339
TseFI GTSAC 1 cut(s) 594
TseI GCWGC 2 cut(s) 439, 848
Tsp45I GTSAC 1 cut(s) 594
XapI RAATTY 2 cut(s) 50, 813
XceI RCATGY 2 cut(s) 329, 625
XmaJI CCTAGG 1 cut(s) 95
XspI CTAG 2 cut(s) 96, 515
Zsp2I ATGCAT 1 cut(s) 667
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.