Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0008459

Physical Location & Seq

Genomic Coordinates Forward (+)

7512904 .. 7515205

Gene Structure 2302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGAATGTGGACAATGATTCAGAGGCAAAGTCAGATGAAAGCTTTGAGAGTGCACTGTCATTGACTGAGAGAGAAATCCACCAATCTGCAGTTGGTTCCTATTCTGGATCTGATACAATGGACGAATCAACAACTTCAAGTAGTGATGATGAGAAGTCACAGTTACAATTGCAATCAAAAGACTCTGATTCTTCAGCTTCATTGCATTCGTGCCCTGAGATTAGTAATGTTGATTTGGCAAGCAGTTCCATGTCAGACATGCAATCCAGCAAACAGGAAGAGCCAAATAAATGTTGGAGAAATACGGACTTAAATCAGTTTCGTAGAGTTCCAAGAGCATTCTGGCCCCATTGGGTATACCGCATGTATGACTCGTATTGTCTTGCTCAAAGAGCAGCAGAGATGTGGAAACAGATAGTTGGGGCACCAAGCATGGATCGTCTTGTGAAGAAGCCTGACATTTTGTCATTTTTTATCGCTAGTAAAGTTCCTGTCTCGGAATGTACTAGGCAGGAGCTTTTGGAGATTGACGGCATTTCATATAGGCTGCGTAGAGAAATTGAGTTGCTTCAGAGTTTTGATCTTATCCGGTGTAAAACATGTCAGACTATCATTGCAAGGCGGAGTAATATGCTGGTGATGTCAAGTGAAGGTCCTCTTGGTGCTTACGTGAACCCAAGTGGTTGCGTTCATGAGATAATGACTCTCTACAAAGCAAATGGCTTGGCACTTATAGGGCCAGCAGTGAGGGAATACAGCTGGTTTCCTGGGTATGCGTGGACAGTAACAAACTGTGGCGGCTGCGAAACCCAAATGGGTTGGCTATTTACAGCCACAAAAAAGAACTTGAAGCCGAAATTTTTTTGGGGAATTCGGAGTTCCCAAGTTTCTGATGACCTGCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0002009 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0007423 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009790 GO:0009887 GO:0009888 GO:0009987 GO:0010498 GO:0016567 GO:0019538 GO:0019941 GO:0030163 GO:0031461 GO:0031464 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0033333 GO:0033334 GO:0033339 GO:0035107 GO:0035113 GO:0035118 GO:0035138 GO:0035239 GO:0035295 GO:0036211 GO:0042471 GO:0042472 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043583 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048513 GO:0048562 GO:0048568 GO:0048598 GO:0048729 GO:0048731 GO:0048736 GO:0048839 GO:0048856 GO:0051603 GO:0060173 GO:0060429 GO:0060562 GO:0070647 GO:0071599 GO:0071600 GO:0071704 GO:0080008 GO:0090596 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LON_substr_bdg Yippee-Mis18

Protein Analysis

302

Amino Acids

34.0

Weight (kDa)

5.37

Isoelectric Point (pI)

60.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Yippee-Mis18	PF03226	196 - 294	6.2e-07	Yippee zinc-binding/DNA-binding /Mis18, centromere assembly

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008459)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25740 AT2G25740
fragaria_vesca	FvH4_2g35320 FvH4_2g35320 FvH4_2g35320 FvH4_2g35320
malus_domestica	MD08G1111400.v1.1 MD15G1090900.v1.1
prunus_persica	Prupe.1G445300_v2.0.a1 Prupe.1G445300_v2.0.a1
pyrus_communis	pycom08g09250 pycom15g08480 pycom15g08490
rosa_chinensis	RchiOBHm_Chr6g0306601
rosa_laevigata	RLG00000010781
rosa_multiflora	Rmu_sc0017624.1_g000002
rosa_roxburghii	Rroxscaffold_7G00161620
rosa_rugosa	Rorug06G0350900
rosa_samantha	Rh6AG463200 Rh6BG437700 Rh6CG477500 Rh6DG464000
rosa_wichuraiana	Rw6G040360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	424
AccI	GTMKAC	1 cut(s)	357
AciI	CCGC	3 cut(s)	361, 622, 798
AclWI	GGATC	2 cut(s)	115, 444
AcsI	RAATTY	2 cut(s)	857, 870
AcuI	CTGAAG	2 cut(s)	177, 554
AfaI	GTAC	1 cut(s)	505
AflIII	ACRYGT	1 cut(s)	599
AgsI	TTSAA	2 cut(s)	138, 850
AhdI	GACNNNNNGTC	1 cut(s)	463
AjnI	CCWGG	1 cut(s)	766
AjuI	GAANNNNNNNTTGG	2 cut(s)	642, 674
AluBI	AGCT	4 cut(s)	42, 197, 517, 759
AluI	AGCT	4 cut(s)	42, 197, 517, 759
Alw21I	GWGCWC	1 cut(s)	55
Alw26I	GTCTC	1 cut(s)	499
Alw44I	GTGCAC	1 cut(s)	51
AlwI	GGATC	2 cut(s)	115, 444
AoxI	GGCC	2 cut(s)	344, 737
ApaLI	GTGCAC	1 cut(s)	51
ApeKI	GCWGC	3 cut(s)	395, 547, 801
ApoI	RAATTY	2 cut(s)	857, 870
AspS9I	GGNCC	3 cut(s)	345, 653, 737
AsuHPI	GGTGA	1 cut(s)	649
AvaII	GGWCC	1 cut(s)	653
BaeGI	GKGCMC	3 cut(s)	55, 215, 427
BanI	GGYRCC	1 cut(s)	424
Bbv12I	GWGCWC	1 cut(s)	55
BbvI	GCAGC	3 cut(s)	407, 534, 788
BceAI	ACGGC	1 cut(s)	547
BciT130I	CCWGG	1 cut(s)	768
BcoDI	GTCTC	1 cut(s)	499
BfaI	CTAG	3 cut(s)	480, 507, 904
BfmI	CTRYAG	1 cut(s)	87
BisI	GCNGC	4 cut(s)	396, 548, 799, 802
BlsI	GCNGC	4 cut(s)	397, 549, 800, 803
Bme1390I	CCNGG	1 cut(s)	768
Bme18I	GGWCC	1 cut(s)	653
BmeRI	GACNNNNNGTC	1 cut(s)	463
BmgT120I	GGNCC	3 cut(s)	345, 653, 737
BmiI	GGNNCC	3 cut(s)	97, 347, 426
BmrFI	CCNGG	1 cut(s)	768
BsaAI	YACGTR	1 cut(s)	670
BsaJI	CCNNGG	1 cut(s)	767
BsaWI	WCCGGW	1 cut(s)	588
Bse3DI	GCAATG	2 cut(s)	200, 612
BseBI	CCWGG	1 cut(s)	768
BseDI	CCNNGG	1 cut(s)	767
BseMI	GCAATG	2 cut(s)	200, 612
BseMII	CTCAG	2 cut(s)	57, 207
BseSI	GKGCMC	3 cut(s)	55, 215, 427
BseXI	GCAGC	3 cut(s)	407, 534, 788
BsgI	GTGCAG	1 cut(s)	884
BshFI	GGCC	2 cut(s)	346, 739
BshNI	GGYRCC	1 cut(s)	424
BsiHKAI	GWGCWC	1 cut(s)	55
BsiSI	CCGG	1 cut(s)	589
BsmAI	GTCTC	1 cut(s)	499
BsmI	GAATGC	2 cut(s)	205, 338
BsnI	GGCC	2 cut(s)	346, 739
Bsp1286I	GDGCHC	3 cut(s)	55, 215, 427
Bsp143I	GATC	3 cut(s)	107, 436, 580
BspACI	CCGC	3 cut(s)	361, 622, 798
BspANI	GGCC	2 cut(s)	346, 739
BspCNI	CTCAG	2 cut(s)	58, 208
BspHI	TCATGA	1 cut(s)	691
BspLI	GGNNCC	3 cut(s)	97, 347, 426
BspMAI	CTGCAG	1 cut(s)	91
BspPI	GGATC	2 cut(s)	115, 444
BspQI	GCTCTTC	1 cut(s)	273
BspT107I	GGYRCC	1 cut(s)	424
BsrDI	GCAATG	2 cut(s)	200, 612
BssECI	CCNNGG	1 cut(s)	767
BssMI	GATC	3 cut(s)	107, 436, 580
BssNAI	GTATAC	1 cut(s)	358
Bst1107I	GTATAC	1 cut(s)	358
Bst2UI	CCWGG	1 cut(s)	768
Bst4CI	ACNGT	4 cut(s)	57, 162, 784, 794
Bst6I	CTCTTC	1 cut(s)	273
BstBAI	YACGTR	1 cut(s)	670
BstC8I	GCNNGC	2 cut(s)	241, 741
BstDEI	CTNAG	2 cut(s)	66, 216
BstKTI	GATC	3 cut(s)	110, 439, 583
BstMAI	GTCTC	1 cut(s)	499
BstMBI	GATC	3 cut(s)	107, 436, 580
BstMWI	GCNNNNNNNGC	1 cut(s)	392
BstNI	CCWGG	1 cut(s)	768
BstNSI	RCATGY	3 cut(s)	262, 367, 603
BstSCI	CCNGG	1 cut(s)	766
BstSFI	CTRYAG	1 cut(s)	87
BstSLI	GKGCMC	3 cut(s)	55, 215, 427
BstV1I	GCAGC	3 cut(s)	407, 534, 788
BstX2I	RGATCY	1 cut(s)	107
BstYI	RGATCY	1 cut(s)	107
BstZ17I	GTATAC	1 cut(s)	358
BsuRI	GGCC	2 cut(s)	346, 739
BtsI	GCAGTG	1 cut(s)	750
BtsIMutI	CAGTG	2 cut(s)	53, 750
Cac8I	GCNNGC	2 cut(s)	241, 741
CciI	TCATGA	1 cut(s)	691
Cfr13I	GGNCC	3 cut(s)	345, 653, 737
Csp6I	GTAC	1 cut(s)	504
CviAII	CATG	6 cut(s)	250, 259, 364, 433, 600, 692
CviQI	GTAC	1 cut(s)	504
DdeI	CTNAG	2 cut(s)	66, 216
DpnI	GATC	3 cut(s)	109, 438, 582
DpnII	GATC	3 cut(s)	107, 436, 580
DriI	GACNNNNNGTC	1 cut(s)	463
Eam1104I	CTCTTC	1 cut(s)	273
Eam1105I	GACNNNNNGTC	1 cut(s)	463
EarI	CTCTTC	1 cut(s)	273
EciI	GGCGGA	1 cut(s)	637
Eco47I	GGWCC	1 cut(s)	653
Eco57I	CTGAAG	2 cut(s)	177, 554
EcoO109I	RGGNCCY	1 cut(s)	653
EcoRI	GAATTC	1 cut(s)	870
EcoRII	CCWGG	1 cut(s)	766
FaeI	CATG	6 cut(s)	253, 262, 367, 436, 603, 695
FalI	AAGNNNNNCTT	2 cut(s)	642, 674
FatI	CATG	6 cut(s)	249, 258, 363, 432, 599, 691
FblI	GTMKAC	1 cut(s)	357
Fnu4HI	GCNGC	4 cut(s)	396, 548, 799, 802
Fsp4HI	GCNGC	4 cut(s)	396, 548, 799, 802
FspBI	CTAG	3 cut(s)	480, 507, 904
GluI	GCNGC	4 cut(s)	396, 548, 799, 802
HaeIII	GGCC	2 cut(s)	346, 739
HapII	CCGG	1 cut(s)	589
Hin1II	CATG	6 cut(s)	253, 262, 367, 436, 603, 695
HindIII	AAGCTT	1 cut(s)	40
HinfI	GANTC	6 cut(s)	17, 125, 182, 188, 371, 703
HpaII	CCGG	1 cut(s)	589
HphI	GGTGA	1 cut(s)	649
Hpy166II	GTNNAC	5 cut(s)	10, 53, 358, 673, 780
Hpy188III	TCNNGA	2 cut(s)	105, 692
Hpy8I	GTNNAC	5 cut(s)	10, 53, 358, 673, 780
HpyAV	CCTTC	1 cut(s)	644
HpyCH4III	ACNGT	4 cut(s)	57, 162, 784, 794
HpyCH4IV	ACGT	1 cut(s)	669
HpyCH4V	TGCA	7 cut(s)	53, 89, 172, 205, 262, 617, 901
HpyF10VI	GCNNNNNNNGC	1 cut(s)	392
HpyF3I	CTNAG	2 cut(s)	66, 216
HpySE526I	ACGT	1 cut(s)	669
Hsp92II	CATG	6 cut(s)	253, 262, 367, 436, 603, 695
Kzo9I	GATC	3 cut(s)	107, 436, 580
LguI	GCTCTTC	1 cut(s)	273
LmnI	GCTCC	1 cut(s)	514
Lsp1109I	GCAGC	3 cut(s)	407, 534, 788
MaeI	CTAG	3 cut(s)	480, 507, 904
MaeII	ACGT	1 cut(s)	669
MaeIII	GTNAC	3 cut(s)	156, 162, 784
MalI	GATC	3 cut(s)	109, 438, 582
MboI	GATC	3 cut(s)	107, 436, 580
MboII	GAAGA	3 cut(s)	183, 290, 460
MfeI	CAATTG	1 cut(s)	167
MflI	RGATCY	1 cut(s)	107
MhlI	GDGCHC	3 cut(s)	55, 215, 427
MluCI	AATT	4 cut(s)	167, 558, 857, 870
MlyI	GAGTC	3 cut(s)	176, 365, 697
MmeI	TCCRAC	1 cut(s)	275
MnlI	CCTC	3 cut(s)	16, 666, 741
MseI	TTAA	1 cut(s)	311
MspA1I	CMGCKG	1 cut(s)	759
MspI	CCGG	1 cut(s)	589
MspR9I	CCNGG	1 cut(s)	768
MunI	CAATTG	1 cut(s)	167
Mva1269I	GAATGC	2 cut(s)	205, 338
MvaI	CCWGG	1 cut(s)	768
MwoI	GCNNNNNNNGC	1 cut(s)	392
NdeII	GATC	3 cut(s)	107, 436, 580
NlaIII	CATG	6 cut(s)	253, 262, 367, 436, 603, 695
NlaIV	GGNNCC	3 cut(s)	97, 347, 426
NmuCI	GTSAC	1 cut(s)	156
NspI	RCATGY	3 cut(s)	262, 367, 603
PagI	TCATGA	1 cut(s)	691
PciI	ACATGT	1 cut(s)	599
PciSI	GCTCTTC	1 cut(s)	273
PctI	GAATGC	2 cut(s)	205, 338
PfeI	GAWTC	3 cut(s)	17, 125, 188
PkrI	GCNGC	4 cut(s)	397, 549, 800, 803
PleI	GAGTC	3 cut(s)	176, 365, 697
PpsI	GAGTC	3 cut(s)	176, 365, 697
Ppu21I	YACGTR	1 cut(s)	670
PpuMI	RGGWCCY	1 cut(s)	653
PscI	ACATGT	1 cut(s)	599
Psp5II	RGGWCCY	1 cut(s)	653
Psp6I	CCWGG	1 cut(s)	766
PspGI	CCWGG	1 cut(s)	766
PspN4I	GGNNCC	3 cut(s)	97, 347, 426
PspPI	GGNCC	3 cut(s)	345, 653, 737
PspPPI	RGGWCCY	1 cut(s)	653
PstI	CTGCAG	1 cut(s)	91
PsuI	RGATCY	1 cut(s)	107
PvuII	CAGCTG	1 cut(s)	759
RsaI	GTAC	1 cut(s)	505
RsaNI	GTAC	1 cut(s)	504
SapI	GCTCTTC	1 cut(s)	273
SaqAI	TTAA	1 cut(s)	311
SatI	GCNGC	4 cut(s)	396, 548, 799, 802
Sau3AI	GATC	3 cut(s)	107, 436, 580
Sau96I	GGNCC	3 cut(s)	345, 653, 737
SchI	GAGTC	3 cut(s)	176, 365, 697
ScrFI	CCNGG	1 cut(s)	768
SduI	GDGCHC	3 cut(s)	55, 215, 427
SetI	ASST	7 cut(s)	44, 199, 519, 655, 672, 761, 900
SfcI	CTRYAG	1 cut(s)	87
SinI	GGWCC	1 cut(s)	653
Sse9I	AATT	4 cut(s)	167, 558, 857, 870
SsiI	CCGC	3 cut(s)	361, 622, 798
SspMI	CTAG	3 cut(s)	480, 507, 904
StyD4I	CCNGG	1 cut(s)	766
TaaI	ACNGT	4 cut(s)	57, 162, 784, 794
TaiI	ACGT	1 cut(s)	672
TasI	AATT	4 cut(s)	167, 558, 857, 870
TatI	WGTACW	1 cut(s)	503
TauI	GCSGC	1 cut(s)	801
TfiI	GAWTC	3 cut(s)	17, 125, 188
Tru1I	TTAA	1 cut(s)	311
Tru9I	TTAA	1 cut(s)	311
TscAI	CASTG	2 cut(s)	60, 750
TseFI	GTSAC	1 cut(s)	156
TseI	GCWGC	3 cut(s)	395, 547, 801
Tsp45I	GTSAC	1 cut(s)	156
TspDTI	ATGAA	5 cut(s)	17, 51, 189, 528, 680
TspGWI	ACGGA	1 cut(s)	320
TspRI	CASTG	2 cut(s)	60, 750
VneI	GTGCAC	1 cut(s)	51
VpaK11BI	GGWCC	1 cut(s)	653
XapI	RAATTY	2 cut(s)	857, 870
XceI	RCATGY	3 cut(s)	262, 367, 603
XcmI	CCANNNNNNNNNTGG	3 cut(s)	89, 291, 339
XmiI	GTMKAC	1 cut(s)	357
XspI	CTAG	3 cut(s)	480, 507, 904

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.