pycom08g09700

protein EMBRYONIC FLOWER

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Reverse (-)
8075000 .. 8075980
981 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g09700.1

Sequence Viewer

Length: 393 bp
ATGGAGAAGGGTCTTCTGATCGACAATAATCATAAGAGGAATGATCCTATTATTGCTTCCAAGACGGTGGGATCATTTGTTAAAATTGATTCAATATCTATAGATCTTCCTGATGCTAATGACAAGAGTAGCAGCCATGCGGGAAACTGCGAGCATTTCACTATACGTGGTTATGTAGCTGAAGTTCGCAAAAAGAATTGGAAGCTTTGTTGTCCATTTCCTCTGGATGGTGAGTTGGACAAGTTTGATCAAGATCCAACATCCTTGCTTCCTCCTTTGGATCCTCCAAAATTCAGAAGGTGGTCTTGCCAGAATTGCGTGCTGGAAAGTGGTTCTGAGAGTATTGCAAGATCCGTTGATCGATCATGGTACAGACATTCGTATTGGATCTGA

Protein Analysis

131

Amino Acids

14.85

Weight (kDa)

6.89

Isoelectric Point (pI)

41.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012478)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 140
AclWI GGATC 6 cut(s) 38, 79, 248, 275, 288, 345
AcsI RAATTY 1 cut(s) 290
AcuI CTGAAG 1 cut(s) 201
AfaI GTAC 1 cut(s) 371
AfiI CCNNNNNNNGG 1 cut(s) 227
AgsI TTSAA 1 cut(s) 93
AluBI AGCT 2 cut(s) 179, 205
AluI AGCT 2 cut(s) 179, 205
AlwI GGATC 6 cut(s) 38, 79, 248, 275, 288, 345
ApeKI GCWGC 1 cut(s) 132
ApoI RAATTY 1 cut(s) 290
AsuHPI GGTGA 1 cut(s) 242
BamHI GGATCC 1 cut(s) 280
BbsI GAAGAC 1 cut(s) 5
BbvI GCAGC 1 cut(s) 144
BccI CCATC 1 cut(s) 221
BclI TGATCA 1 cut(s) 247
BfmI CTRYAG 1 cut(s) 99
BglII AGATCT 1 cut(s) 103
BisI GCNGC 1 cut(s) 133
BlsI GCNGC 1 cut(s) 134
BmiI GGNNCC 1 cut(s) 282
BmsI GCATC 1 cut(s) 103
BpiI GAAGAC 1 cut(s) 5
Bsa29I ATCGAT 1 cut(s) 361
BsaAI YACGTR 1 cut(s) 167
BsaBI GATNNNNATC 1 cut(s) 252
Bsc4I CCNNNNNNNGG 1 cut(s) 227
Bse8I GATNNNNATC 1 cut(s) 252
BseCI ATCGAT 1 cut(s) 361
BseGI GGATG 2 cut(s) 232, 260
BseJI GATNNNNATC 1 cut(s) 252
BseLI CCNNNNNNNGG 1 cut(s) 227
BseMII CTCAG 1 cut(s) 327
BseXI GCAGC 1 cut(s) 144
BshVI ATCGAT 1 cut(s) 361
BslI CCNNNNNNNGG 1 cut(s) 227
BspACI CCGC 1 cut(s) 140
BspCNI CTCAG 1 cut(s) 328
BspDI ATCGAT 1 cut(s) 361
BspLI GGNNCC 1 cut(s) 282
BspPI GGATC 6 cut(s) 38, 79, 248, 275, 288, 345
Bst4CI ACNGT 1 cut(s) 67
BstBAI YACGTR 1 cut(s) 167
BstC8I GCNNGC 2 cut(s) 152, 320
BstDEI CTNAG 1 cut(s) 336
BstF5I GGATG 2 cut(s) 232, 260
BstMWI GCNNNNNNNGC 1 cut(s) 315
BstSFI CTRYAG 1 cut(s) 99
BstV1I GCAGC 1 cut(s) 144
BstV2I GAAGAC 1 cut(s) 5
BstX2I RGATCY 5 cut(s) 103, 253, 280, 350, 387
BstXI CCANNNNNNTGG 1 cut(s) 67
BstYI RGATCY 5 cut(s) 103, 253, 280, 350, 387
Bsu15I ATCGAT 1 cut(s) 361
BsuTUI ATCGAT 1 cut(s) 361
BtsCI GGATG 2 cut(s) 232, 260
Cac8I GCNNGC 2 cut(s) 152, 320
ClaI ATCGAT 1 cut(s) 361
Csp6I GTAC 1 cut(s) 370
CviAII CATG 2 cut(s) 137, 366
CviJI RGCY 3 cut(s) 135, 179, 205
CviKI_1 RGCY 3 cut(s) 135, 179, 205
CviQI GTAC 1 cut(s) 370
DdeI CTNAG 1 cut(s) 336
Eco57I CTGAAG 1 cut(s) 201
FaeI CATG 2 cut(s) 140, 369
FaiI YATR 6 cut(s) 33, 101, 138, 164, 174, 367
FalI AAGNNNNNCTT 2 cut(s) 289, 321
FatI CATG 2 cut(s) 136, 365
FauI CCCGC 1 cut(s) 133
FbaI TGATCA 1 cut(s) 247
Fnu4HI GCNGC 1 cut(s) 133
FokI GGATG 2 cut(s) 239, 247
Fsp4HI GCNGC 1 cut(s) 133
GluI GCNGC 1 cut(s) 133
Hin1II CATG 2 cut(s) 140, 369
HindIII AAGCTT 1 cut(s) 203
HinfI GANTC 1 cut(s) 89
HphI GGTGA 1 cut(s) 242
Hpy188I TCNGA 4 cut(s) 18, 296, 337, 392
Hpy188III TCNNGA 3 cut(s) 110, 224, 251
HpyAV CCTTC 1 cut(s) 291
HpyCH4III ACNGT 1 cut(s) 67
HpyCH4IV ACGT 1 cut(s) 166
HpyCH4V TGCA 1 cut(s) 347
HpyF10VI GCNNNNNNNGC 1 cut(s) 315
HpyF3I CTNAG 1 cut(s) 336
HpySE526I ACGT 1 cut(s) 166
Hsp92II CATG 2 cut(s) 140, 369
Ksp22I TGATCA 1 cut(s) 247
LpnPI CCDG 4 cut(s) 123, 209, 308, 323
Lsp1109I GCAGC 1 cut(s) 144
LweI GCATC 1 cut(s) 103
MaeII ACGT 1 cut(s) 166
MboII GAAGA 2 cut(s) 5, 98
MflI RGATCY 5 cut(s) 103, 253, 280, 350, 387
MluCI AATT 4 cut(s) 84, 196, 290, 313
MmeI TCCRAC 2 cut(s) 216, 281
MnlI CCTC 4 cut(s) 30, 231, 282, 294
MseI TTAA 1 cut(s) 81
MwoI GCNNNNNNNGC 1 cut(s) 315
NlaIII CATG 2 cut(s) 140, 369
NlaIV GGNNCC 1 cut(s) 282
PfeI GAWTC 1 cut(s) 89
PkrI GCNGC 1 cut(s) 134
Ppu21I YACGTR 1 cut(s) 167
PspN4I GGNNCC 1 cut(s) 282
PsrI GAACNNNNNNTAC 2 cut(s) 168, 200
PsuI RGATCY 5 cut(s) 103, 253, 280, 350, 387
RsaI GTAC 1 cut(s) 371
RsaNI GTAC 1 cut(s) 370
SaqAI TTAA 1 cut(s) 81
SatI GCNGC 1 cut(s) 133
SetI ASST 4 cut(s) 169, 181, 207, 302
SfaNI GCATC 1 cut(s) 103
SfcI CTRYAG 1 cut(s) 99
Sse9I AATT 4 cut(s) 84, 196, 290, 313
SsiI CCGC 1 cut(s) 140
TaaI ACNGT 1 cut(s) 67
TaiI ACGT 1 cut(s) 169
TaqI TCGA 2 cut(s) 21, 361
TasI AATT 4 cut(s) 84, 196, 290, 313
TfiI GAWTC 1 cut(s) 89
Tru1I TTAA 1 cut(s) 81
Tru9I TTAA 1 cut(s) 81
TseI GCWGC 1 cut(s) 132
TspGWI ACGGA 1 cut(s) 343
XapI RAATTY 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.