Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0012478

Physical Location & Seq

Genomic Coordinates Reverse (-)

4740359 .. 4745258

Gene Structure 4900 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010844

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3831 bp

ATGGAGAAGGATATTTCGACGGATGATAATCTTATTAAGAGGAGTGATCCTATTATTGCTTCCAAGGCTGTGGGGTCTTTTGTAAAGATTGATTCTATATCCATAGATCTTGATGATGCAAATGATGACAACAGACATGCGGGGAAGTGTGAGCATTTCTCCATACGTGGTTACGTGTCTGAAGTTCGAAAAAAGAACTGGAAGATATGTTGGCCATTTGCTTTAGACGGTGATTTGGACAAGTCGGATCAGGAGAAAACAGCTATGCTTCCTCCTTTGGATGCTCCAAAATTCAGATCGTGGTGTTGCCAGAATTGTCTGCGTGAAATTGGTTCTAAAGGTCATGGTACAGACCTTAATTGTCATGTTGGATCTAATTCCAAGTGCACTGGTGCTCAGATGCCACCCGCCACTGATACTGCATTGCTTCAGTCAGATTATCAACAAGGTCCGAAGTCAAAAACCGTTGAGGAAAAACAATTTCATGCTTATACTTATACTATTGTGGATGGCAGTGAGACACATCCTTCCTCACGTATCGATAAGAAAAAAAGGAATGGTGAAGTTTCACCCACAACCATCATAGCGAATGAGAATGCCCTAGCAAATTGGGTGAGTCATGAAATGCCCAGATTCAATTCTGCGGAGACAGAAGTTAACTCTAGTAGGATGCAGGAGAGACATAATCATGTCACAGAAAAATTGGGTTGCAATGGATCTGTCAGAGTCTATAAGCCAGGATGTGAAAGTCATGAAGATGCCAGCCTTCAGCTTGAGATTACAAAAAACAATTGCTGGATAAGGAATTCCACTCAGAATGGTGAAACTGAGTACCATTCATTTGCAGCCAACAAACAGGAGTCAATAAATGCTTCTGGACTATGTAATGGCAGGATGGTTGGCGAGGCAGGCAATCCTATCAAGGTTCAGACCAATGTTTGTTGTCCTCTGATTTTAGATGAGTGTGATTATGCATCATCTGAAAATCAAGAAAAGTCCAGTGGTTTTCATCGTAAGAAAAGTCGAAAGGTGCGTTTGTTGACTGAGTTGTTGTGTAATAAAGAGGATGCAAAGACCGATTACACCAGGACAGAAGATTCTCCTTCCAATATGATCAATAATACATCTGAGATGGGATCTGTTTCCCAAGGTCAGGTGTCTCTCCAAGAAAATGTTAGAGTGGGTTCAGGTGAGAATAAAAAAAGGAGGTTGTCAGAGGAAGAAGAGAAGGGAGGCCAAGAGATGAGCCATCCAAAGAGTAAAAAAGTTAAGACTTTTAGGCGAGATGGAGAAGCCGCCAATGCAATTGCAACTACTGGATTGGAAGAAGATGCATTGGCCAGAATTTCTTTGCAGGTTGATATGAAGAATAATTGGAGTAGATATGGAAATGAAAGGATCCATGCTGTTGGTAAGAAGAAAGCTAAGAAATCTCATGAATTTGATGCATGGTCGTCCTTATCCCCAACTGCAGAAAATGTGCCAATAGAAGCCCAGGACAAATTTGGAAATTCAAGCAAGAATGCTACTAATGGTGCTTCTTTTAGACCAATGTATGATCCATCAGTTAGAGAGAGTGATTTGCACTCTTCAAAGAAAGATAGAAAATCTGGTTTTGTTAAGAGGAAAGGCAAGATGCCACAATCTGATACTGGGCCGGTTTTTCTATCAAATACAAGGAAAGATGCAGAAATCAAGGCAAATGGGCAAGGAACCGTTAGATTTCATCCGGCAGAAGATGCATCTACTGAGAAAGGGCTGGATCTTTCTCTCAACAGCTATTTGGCTACCCAAAGATATGACGGAAAATGTCTTCCTCAACAAGAAGATGGATTTCCTTCCTTGTCAACTTGGAAAGATAGCACTTGCAAACTAGATGAGTTCATGAGGAAAAATGTGGAAGTCAATTATTTGGCGAATTTAAACAAACCTTCTACATCTATGGCAAATCCATTATCTGACAATGGAGTACCTGGTGAACCAAGTAAAAAAGTTTACTCCTACAGCATGCCTATTCTGAATGAGGGGCAAAATTACAGCTCCCAGGTTGAACAAGGGAGCTGTTCGTTAATGCAGCAAATGGATATATCTCGCGGAAGCAAGATTCAGAAAATCATTGAGGTTGAGAAAAATTCAGGTGTGCCTGTTCTTAGGAAGCATAGCAACCATCAAGCTGAGATGTCTGAAAAGGGTACTATAGATGACATACCAATGGAAATTGTTGAACTCATGGCGAAAAATCAGTATGAGAGATGTCTTCATGAGACTCAAAATGATAAGCATGTATTAGAAACCCCAAGCAGAGCAAGGAATGCTCAGATGATGGAGCATACTCAAGTATATGGCATTGGGGACTTGAGAGTATTAGAGGAAACCAGTCAGAAACGAAAAGCTCAGGCAAGAAATGCAAAAAATGGCACAACAAAGAAAAATGTGGCACCTGTCCAACAGAAGTCCGTTGATTATTTTCCTTATATCAATGGAAACCATTTTGGCATGAATCGTCTTGATCAAATGCATTGCACCACAGGGTTTGGTCCATTCAGTCAGTCTCAAAAGAAGCCTTCACCACGAGGCCAATTTCCTGCAACTGGCAACAGCAAATGTAGTTGTGCTCAAAGTTGCAAATGGGATGGAAATATGATGGGGCACAGGTTCTCGAATTCAAACTTGCAGAGCTTTGCAGCATGCAACACATGCCAGTCTGTTCCGCAATCAAAGGAAGAAGCAGCTCATCTTTGGTCACCTGTAATATCAGCTCACATGCCCTTTGCTTACAAGAATCCTCAAAAGGGTCCAGCCCAGTCATCTAATGTCAAAATGGTTTCACAGTCTCCCGGCCCACTGCAGAAGGGAAATGCCACTGGAGATTGTGACCTGAGTTTGAATCTGAATGCTCCCAACTTTGAGAAGCGTAATGAAGCTGTTGGTTCTGAAACTATCAGCAGAACAAATCCAGAGTACTCGTTTACTTGCAAACGTAACGGGACCGAGCCTCATCAAAATTCATTGGGGTCATTAGATTTATATTCTAATGAAACCATACCAGCAATGCATTTGCTCAGCCTCATGGATGCAGGGATGCGGTCAGGTGCATCCTTAAATATGGGTGGAAACCCGAAATTTCCCAAGAGACCCTTTCCTAATGATCTCAACTCTAAGGGATATCCTGGGCTGGATATTGGTCTTTATAAGGCTACTGATACTGTGAATCATCCATCATCAAACTGTTATGGGAAAAATCACCTTTCTGAGAAATCTCTCGATTTGTTTCCTACCAATCCAACTTTTGGGGCATCTACATCTTCATTTGAACACTCAAAAAGTTTTGGAAGGGCTACAGACTTTATGGATCAAGTTTCGAGCTCTCAAAAGAAAGAAAAGATCCAAAGATCCCATTCACCTGCACAGAATAGAGGTCCTAGATCAGAAAAATCTTTAGCTGCTGATGGTGGTTTTGGCAACAATCGTACAACTATCCCTGTTCATAGTATACCGAAAGGGTTCCTTCCTGTTTCTGGTCCTTTGATGTTTCCGCTGCACTACCACACCATTGCAAATTCAAGGAAACACAACTTGGAAACTCCTAATGCTAATGGAACCATGAAGCCTCCAAAGACTAGTTTGGAGTCTTCAATCTGCTGTATGAACAGAAATCCAGCTGATTTCAGCATGCCAGATGTAGGAAATGGGTACATGATTAGAGGTGAAGACCTAAAAGTTGGGAAGAAGATTTCTTCTGAAAAGAGGCACGGCTTATTTAAAGTGGAGCAGCAGAAGCGCCAGAGGAATACAAAACACACTATTGAAAAGGATCGCGCGCGACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009628 GO:0009651 GO:0009791 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009910 GO:0009987 GO:0010022 GO:0010073 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0018022 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0036211 GO:0042538 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048367 GO:0048507 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070734 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1901564 GO:1902679 GO:1903506 GO:1903507 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

1277

Amino Acids

141.56

Weight (kDa)

8.84

Isoelectric Point (pI)

46.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012478)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11530 AT5G11530 AT5G11530
fragaria_vesca	FvH4_2g35880 FvH4_2g35880
malus_domestica	MD08G1116300.v1.1 MD15G1096000.v1.1
prunus_persica	Prupe.1G450900_v2.0.a1
pyrus_communis	pycom08g09700
rosa_chinensis	RchiOBHm_Chr6g0305941
rosa_laevigata	RLG00000010844
rosa_multiflora	Rmu_sc0001809.1_g000052
rosa_roxburghii	Rroxscaffold_7G00162200
rosa_rugosa	Rorug06G0345500
rosa_samantha	Rh6AG457200 Rh6BG443900 Rh6CG471200 Rh6DG457700
rosa_wichuraiana	Rw6G039890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	3192
AarI	CACCTGC	1 cut(s)	3412
Acc36I	ACCTGC	2 cut(s)	1345, 3412
AccB1I	GGYRCC	1 cut(s)	2437
AccB7I	CCANNNNNTGG	1 cut(s)	3290
AccI	GTMKAC	1 cut(s)	3493
AccII	CGCG	4 cut(s)	2094, 3819, 3821, 3823
AciI	CCGC	8 cut(s)	140, 408, 644, 1296, 2094, 2711, 3085, 3536
AcoI	YGGCCR	2 cut(s)	212, 1338
AcuI	CTGAAG	3 cut(s)	201, 413, 752
AfaI	GTAC	7 cut(s)	349, 833, 1971, 2194, 2963, 3472, 3695
AfiI	CCNNNNNNNGG	6 cut(s)	1153, 2591, 2792, 3290, 3518, 3683
AflIII	ACRYGT	1 cut(s)	174
AhlI	ACTAGT	1 cut(s)	3620
AjnI	CCWGG	6 cut(s)	736, 1085, 1494, 1972, 2043, 3169
AjuI	GAANNNNNNNTTGG	2 cut(s)	3560, 3592
Alw21I	GWGCWC	4 cut(s)	389, 397, 2617, 3368
Alw26I	GTCTC	8 cut(s)	512, 641, 673, 1164, 2258, 2556, 2838, 3127
Alw44I	GTGCAC	1 cut(s)	385
AoxI	GGCC	6 cut(s)	212, 1234, 1338, 1655, 2575, 2839
ApaLI	GTGCAC	1 cut(s)	385
ApeKI	GCWGC	7 cut(s)	845, 2074, 2684, 2729, 3443, 3538, 3772
Asp700I	GAANNNNTTC	1 cut(s)	3503
AspLEI	GCGC	3 cut(s)	3783, 3821, 3823
AspS9I	GGNCC	8 cut(s)	449, 1655, 2537, 2795, 2840, 2988, 3419, 3521
AsuC2I	CCSGG	1 cut(s)	2838
AsuII	TTCGAA	1 cut(s)	187
AvaII	GGWCC	6 cut(s)	449, 2537, 2795, 2988, 3419, 3521
BaeGI	GKGCMC	2 cut(s)	389, 2652
BalI	TGGCCA	2 cut(s)	214, 1340
BamHI	GGATCC	1 cut(s)	1398
BanI	GGYRCC	1 cut(s)	2437
BanII	GRGCYC	1 cut(s)	3368
BauI	CACGAG	1 cut(s)	2571
BbsI	GAAGAC	4 cut(s)	1805, 2249, 3624, 3717
Bbv12I	GWGCWC	4 cut(s)	389, 397, 2617, 3368
BbvI	GCAGC	7 cut(s)	857, 2086, 2696, 2741, 3430, 3525, 3784
BceAI	ACGGC	1 cut(s)	3769
BciT130I	CCWGG	6 cut(s)	738, 1087, 1496, 1974, 2045, 3171
BclI	TGATCA	2 cut(s)	1113, 2509
BcnI	CCSGG	1 cut(s)	2838
BcoDI	GTCTC	8 cut(s)	512, 641, 673, 1164, 2258, 2556, 2838, 3127
BcuI	ACTAGT	1 cut(s)	3620
BfaI	CTAG	5 cut(s)	602, 663, 1874, 3423, 3621
BfmI	CTRYAG	5 cut(s)	1470, 2002, 2196, 2846, 3339
BfoI	RGCGCY	1 cut(s)	3784
BfuAI	ACCTGC	2 cut(s)	1345, 3412
BglII	AGATCT	1 cut(s)	106
BisI	GCNGC	8 cut(s)	846, 1296, 2075, 2685, 2730, 3444, 3539, 3773
BlpI	GCTNAGC	1 cut(s)	3062
BlsI	GCNGC	8 cut(s)	847, 1297, 2076, 2686, 2731, 3445, 3540, 3774
BmcAI	AGTACT	1 cut(s)	2963
Bme1390I	CCNGG	7 cut(s)	738, 1087, 1496, 1974, 2045, 2838, 3171
Bme18I	GGWCC	6 cut(s)	449, 2537, 2795, 2988, 3419, 3521
BmgT120I	GGNCC	8 cut(s)	449, 1655, 2537, 2795, 2840, 2988, 3419, 3521
BmiI	GGNNCC	7 cut(s)	1400, 1714, 2439, 2796, 2989, 3506, 3601
BmrFI	CCNGG	7 cut(s)	738, 1087, 1496, 1974, 2045, 2838, 3171
BmrI	ACTGGG	2 cut(s)	1662, 2797
BmuI	ACTGGG	2 cut(s)	1662, 2797
BpiI	GAAGAC	4 cut(s)	1805, 2249, 3624, 3717
BplI	GAGNNNNNCTC	2 cut(s)	143, 175
BpmI	CTGGAG	1 cut(s)	2886
Bpu10I	CCTNAGC	1 cut(s)	2394
Bpu1102I	GCTNAGC	1 cut(s)	3062
Bpu14I	TTCGAA	1 cut(s)	187
BpuEI	CTTGAG	3 cut(s)	794, 2319, 2377
BpuMI	CCSGG	1 cut(s)	2838
Bsa29I	ATCGAT	1 cut(s)	540
BsaAI	YACGTR	3 cut(s)	167, 175, 536
BsaBI	GATNNNNATC	1 cut(s)	27
BsaI	GGTCTC	1 cut(s)	3127
BsaJI	CCNNGG	5 cut(s)	63, 1147, 1494, 2043, 3170
Bsc4I	CCNNNNNNNGG	6 cut(s)	1153, 2591, 2792, 3290, 3518, 3683
Bse118I	RCCGGY	1 cut(s)	1657
Bse3DI	GCAATG	5 cut(s)	422, 718, 2518, 3057, 3552
Bse8I	GATNNNNATC	1 cut(s)	27
BseBI	CCWGG	6 cut(s)	738, 1087, 1496, 1974, 2045, 3171
BseCI	ATCGAT	1 cut(s)	540
BseDI	CCNNGG	5 cut(s)	63, 1147, 1494, 2043, 3170
BseJI	GATNNNNATC	1 cut(s)	27
BseLI	CCNNNNNNNGG	6 cut(s)	1153, 2591, 2792, 3290, 3518, 3683
BseMI	GCAATG	5 cut(s)	422, 718, 2518, 3057, 3552
BsePI	GCGCGC	1 cut(s)	3819
BseRI	GAGGAG	1 cut(s)	55
BseSI	GKGCMC	2 cut(s)	389, 2652
BseXI	GCAGC	7 cut(s)	857, 2086, 2696, 2741, 3430, 3525, 3784
BsgI	GTGCAG	2 cut(s)	3390, 3524
Bsh1236I	CGCG	4 cut(s)	2094, 3819, 3821, 3823
BshFI	GGCC	6 cut(s)	214, 1236, 1340, 1657, 2577, 2841
BshNI	GGYRCC	1 cut(s)	2437
BshVI	ATCGAT	1 cut(s)	540
BsiHKAI	GWGCWC	4 cut(s)	389, 397, 2617, 3368
BsiSI	CCGG	3 cut(s)	1658, 1730, 2838
BslFI	GGGAC	2 cut(s)	2366, 3001
BslI	CCNNNNNNNGG	6 cut(s)	1153, 2591, 2792, 3290, 3518, 3683
BsmAI	GTCTC	8 cut(s)	512, 641, 673, 1164, 2258, 2556, 2838, 3127
BsmFI	GGGAC	2 cut(s)	2366, 3001
BsmI	GAATGC	4 cut(s)	601, 1528, 2317, 2899
BsnI	GGCC	6 cut(s)	214, 1236, 1340, 1657, 2577, 2841
Bso31I	GGTCTC	1 cut(s)	3127
Bsp119I	TTCGAA	1 cut(s)	187
Bsp1286I	GDGCHC	5 cut(s)	389, 397, 2617, 2652, 3368
Bsp1720I	GCTNAGC	1 cut(s)	3062
BspACI	CCGC	8 cut(s)	140, 408, 644, 1296, 2094, 2711, 3085, 3536
BspANI	GGCC	6 cut(s)	214, 1236, 1340, 1657, 2577, 2841
BspDI	ATCGAT	1 cut(s)	540
BspFNI	CGCG	4 cut(s)	2094, 3819, 3821, 3823
BspHI	TCATGA	5 cut(s)	619, 751, 1435, 1884, 2260
BspLI	GGNNCC	7 cut(s)	1400, 1714, 2439, 2796, 2989, 3506, 3601
BspMAI	CTGCAG	2 cut(s)	1474, 2850
BspMI	ACCTGC	2 cut(s)	1345, 3412
BspT104I	TTCGAA	1 cut(s)	187
BspT107I	GGYRCC	1 cut(s)	2437
BspTNI	GGTCTC	1 cut(s)	3127
BsrDI	GCAATG	5 cut(s)	422, 718, 2518, 3057, 3552
BsrFI	RCCGGY	1 cut(s)	1657
BssAI	RCCGGY	1 cut(s)	1657
BssECI	CCNNGG	5 cut(s)	63, 1147, 1494, 2043, 3170
BssHII	GCGCGC	1 cut(s)	3819
BssNAI	GTATAC	1 cut(s)	3494
BssSI	CACGAG	1 cut(s)	2571
BssT1I	CCWWGG	2 cut(s)	63, 1147
Bst1107I	GTATAC	1 cut(s)	3494
Bst2BI	CACGAG	1 cut(s)	2571
Bst2UI	CCWGG	6 cut(s)	738, 1087, 1496, 1974, 2045, 3171
Bst4CI	ACNGT	6 cut(s)	230, 466, 1717, 2832, 3208, 3230
Bst6I	CTCTTC	2 cut(s)	1218, 1594
BstAPI	GCANNNNNTGC	4 cut(s)	1739, 2312, 2405, 2697
BstBAI	YACGTR	3 cut(s)	167, 175, 536
BstBI	TTCGAA	1 cut(s)	187
BstC8I	GCNNGC	6 cut(s)	763, 910, 2009, 2689, 3674, 3821
BstEII	GGTNACC	1 cut(s)	2742
BstFNI	CGCG	4 cut(s)	2094, 3819, 3821, 3823
BstH2I	RGCGCY	1 cut(s)	3784
BstHHI	GCGC	3 cut(s)	3783, 3821, 3823
BstMAI	GTCTC	8 cut(s)	512, 641, 673, 1164, 2258, 2556, 2838, 3127
BstMWI	GCNNNNNNNGC	8 cut(s)	65, 909, 1301, 1739, 2312, 2405, 2697, 3778
BstNI	CCWGG	6 cut(s)	738, 1087, 1496, 1974, 2045, 3171
BstNSI	RCATGY	7 cut(s)	140, 2011, 2285, 2691, 2700, 2767, 3676
BstPI	GGTNACC	1 cut(s)	2742
BstSCI	CCNGG	7 cut(s)	736, 1085, 1494, 1972, 2043, 2836, 3169
BstSFI	CTRYAG	5 cut(s)	1470, 2002, 2196, 2846, 3339
BstSLI	GKGCMC	2 cut(s)	389, 2652
BstUI	CGCG	4 cut(s)	2094, 3819, 3821, 3823
BstV1I	GCAGC	7 cut(s)	857, 2086, 2696, 2741, 3430, 3525, 3784
BstV2I	GAAGAC	4 cut(s)	1805, 2249, 3624, 3717
BstX2I	RGATCY	8 cut(s)	106, 371, 716, 1136, 1398, 1762, 3384, 3392
BstXI	CCANNNNNNTGG	2 cut(s)	70, 1409
BstYI	RGATCY	8 cut(s)	106, 371, 716, 1136, 1398, 1762, 3384, 3392
BstZ17I	GTATAC	1 cut(s)	3494
Bsu15I	ATCGAT	1 cut(s)	540
BsuRI	GGCC	6 cut(s)	214, 1236, 1340, 1657, 2577, 2841
BsuTUI	ATCGAT	1 cut(s)	540
BtsI	GCAGTG	2 cut(s)	520, 2843
BtsIMutI	CAGTG	6 cut(s)	387, 411, 520, 1006, 2843, 2862
BveI	ACCTGC	2 cut(s)	1345, 3412
Cac8I	GCNNGC	6 cut(s)	763, 910, 2009, 2689, 3674, 3821
CciI	TCATGA	5 cut(s)	619, 751, 1435, 1884, 2260
CfoI	GCGC	3 cut(s)	3783, 3821, 3823
Cfr10I	RCCGGY	1 cut(s)	1657
Cfr13I	GGNCC	8 cut(s)	449, 1655, 2537, 2795, 2840, 2988, 3419, 3521
ClaI	ATCGAT	1 cut(s)	540
CsiI	ACCWGGT	1 cut(s)	1972
Csp6I	GTAC	7 cut(s)	348, 832, 1970, 2193, 2962, 3471, 3694
CspCI	CAANNNNNGTGG	2 cut(s)	2515, 2550
CviQI	GTAC	7 cut(s)	348, 832, 1970, 2193, 2962, 3471, 3694
DraI	TTTAAA	2 cut(s)	1923, 3763
EaeI	YGGCCR	2 cut(s)	212, 1338
Eam1104I	CTCTTC	2 cut(s)	1218, 1594
EarI	CTCTTC	2 cut(s)	1218, 1594
Ecl136II	GAGCTC	1 cut(s)	3366
Eco130I	CCWWGG	2 cut(s)	63, 1147
Eco24I	GRGCYC	1 cut(s)	3368
Eco31I	GGTCTC	1 cut(s)	3127
Eco32I	GATATC	1 cut(s)	3167
Eco47I	GGWCC	6 cut(s)	449, 2537, 2795, 2988, 3419, 3521
Eco53kI	GAGCTC	1 cut(s)	3366
Eco57I	CTGAAG	3 cut(s)	201, 413, 752
Eco91I	GGTNACC	1 cut(s)	2742
EcoICRI	GAGCTC	1 cut(s)	3366
EcoO109I	RGGNCCY	1 cut(s)	3419
EcoO65I	GGTNACC	1 cut(s)	2742
EcoRI	GAATTC	2 cut(s)	805, 2662
EcoRII	CCWGG	6 cut(s)	736, 1085, 1494, 1972, 2043, 3169
EcoRV	GATATC	1 cut(s)	3167
EcoT14I	CCWWGG	2 cut(s)	63, 1147
EcoT22I	ATGCAT	6 cut(s)	976, 1336, 1450, 1744, 2520, 3057
EcoT38I	GRGCYC	1 cut(s)	3368
ErhI	CCWWGG	2 cut(s)	63, 1147
FalI	AAGNNNNNCTT	4 cut(s)	3122, 3154, 3492, 3524
FaqI	GGGAC	2 cut(s)	2366, 3001
FauI	CCCGC	2 cut(s)	133, 415
FbaI	TGATCA	2 cut(s)	1113, 2509
FblI	GTMKAC	1 cut(s)	3493
Fnu4HI	GCNGC	8 cut(s)	846, 1296, 2075, 2685, 2730, 3444, 3539, 3773
FriOI	GRGCYC	1 cut(s)	3368
Fsp4HI	GCNGC	8 cut(s)	846, 1296, 2075, 2685, 2730, 3444, 3539, 3773
FspBI	CTAG	5 cut(s)	602, 663, 1874, 3423, 3621
GlaI	GCGC	3 cut(s)	3782, 3820, 3822
GluI	GCNGC	8 cut(s)	846, 1296, 2075, 2685, 2730, 3444, 3539, 3773
GsuI	CTGGAG	1 cut(s)	2886
HaeII	RGCGCY	1 cut(s)	3784
HaeIII	GGCC	6 cut(s)	214, 1236, 1340, 1657, 2577, 2841
HapII	CCGG	3 cut(s)	1658, 1730, 2838
HhaI	GCGC	3 cut(s)	3783, 3821, 3823
Hin6I	GCGC	3 cut(s)	3781, 3819, 3821
HinP1I	GCGC	3 cut(s)	3781, 3819, 3821
HincII	GTYRAC	3 cut(s)	658, 1041, 1848
HindII	GTYRAC	3 cut(s)	658, 1041, 1848
HpaI	GTTAAC	1 cut(s)	658
HpaII	CCGG	3 cut(s)	1658, 1730, 2838
Hpy166II	GTNNAC	8 cut(s)	387, 658, 1041, 1848, 1979, 1996, 2970, 3494
Hpy8I	GTNNAC	8 cut(s)	387, 658, 1041, 1848, 1979, 1996, 2970, 3494
Hpy99I	CGWCG	1 cut(s)	22
HpyCH4III	ACNGT	6 cut(s)	230, 466, 1717, 2832, 3208, 3230
HpyCH4IV	ACGT	4 cut(s)	166, 174, 535, 2980
HpyF10VI	GCNNNNNNNGC	8 cut(s)	65, 909, 1301, 1739, 2312, 2405, 2697, 3778
HpySE526I	ACGT	4 cut(s)	166, 174, 535, 2980
HspAI	GCGC	3 cut(s)	3781, 3819, 3821
Ksp22I	TGATCA	2 cut(s)	1113, 2509
KspAI	GTTAAC	1 cut(s)	658
LmnI	GCTCC	6 cut(s)	289, 2045, 2058, 2326, 2902, 3769
Lsp1109I	GCAGC	7 cut(s)	857, 2086, 2696, 2741, 3430, 3525, 3784
MabI	ACCWGGT	1 cut(s)	1972
MaeI	CTAG	5 cut(s)	602, 663, 1874, 3423, 3621
MaeII	ACGT	4 cut(s)	166, 174, 535, 2980
MaeIII	GTNAC	5 cut(s)	170, 691, 2742, 2873, 2981
MauBI	CGCGCGCG	1 cut(s)	3819
MfeI	CAATTG	2 cut(s)	790, 1305
MflI	RGATCY	8 cut(s)	106, 371, 716, 1136, 1398, 1762, 3384, 3392
MhlI	GDGCHC	5 cut(s)	389, 397, 2617, 2652, 3368
MlsI	TGGCCA	2 cut(s)	214, 1340
MluNI	TGGCCA	2 cut(s)	214, 1340
MlyI	GAGTC	5 cut(s)	625, 735, 869, 2260, 3638
MmeI	TCCRAC	4 cut(s)	225, 349, 2470, 3308
Mox20I	TGGCCA	2 cut(s)	214, 1340
Mph1103I	ATGCAT	6 cut(s)	976, 1336, 1450, 1744, 2520, 3057
MroXI	GAANNNNTTC	1 cut(s)	3503
MscI	TGGCCA	2 cut(s)	214, 1340
MseI	TTAA	9 cut(s)	36, 357, 657, 1269, 1620, 1922, 2069, 3101, 3762
MslI	CAYNNNNRTG	3 cut(s)	687, 756, 2210
Msp20I	TGGCCA	2 cut(s)	214, 1340
MspA1I	CMGCKG	2 cut(s)	3538, 3662
MspI	CCGG	3 cut(s)	1658, 1730, 2838
MspR9I	CCNGG	7 cut(s)	738, 1087, 1496, 1974, 2045, 2838, 3171
MunI	CAATTG	2 cut(s)	790, 1305
Mva1269I	GAATGC	4 cut(s)	601, 1528, 2317, 2899
MvaI	CCWGG	6 cut(s)	738, 1087, 1496, 1974, 2045, 3171
MvnI	CGCG	4 cut(s)	2094, 3819, 3821, 3823
MwoI	GCNNNNNNNGC	8 cut(s)	65, 909, 1301, 1739, 2312, 2405, 2697, 3778
NciI	CCSGG	1 cut(s)	2838
NlaIV	GGNNCC	7 cut(s)	1400, 1714, 2439, 2796, 2989, 3506, 3601
NmuCI	GTSAC	3 cut(s)	691, 2742, 2873
NsiI	ATGCAT	6 cut(s)	976, 1336, 1450, 1744, 2520, 3057
NspI	RCATGY	7 cut(s)	140, 2011, 2285, 2691, 2700, 2767, 3676
NspV	TTCGAA	1 cut(s)	187
PaeI	GCATGC	3 cut(s)	2011, 2691, 3676
PagI	TCATGA	5 cut(s)	619, 751, 1435, 1884, 2260
PaqCI	CACCTGC	1 cut(s)	3412
PauI	GCGCGC	1 cut(s)	3819
PcsI	WCGNNNNNNNCGW	1 cut(s)	1030
PctI	GAATGC	4 cut(s)	601, 1528, 2317, 2899
PdmI	GAANNNNTTC	1 cut(s)	3503
PfeI	GAWTC	8 cut(s)	92, 633, 1097, 2104, 2500, 2782, 2887, 3211
PflMI	CCANNNNNTGG	1 cut(s)	3290
PkrI	GCNGC	8 cut(s)	847, 1297, 2076, 2686, 2731, 3445, 3540, 3774
PleI	GAGTC	5 cut(s)	624, 734, 868, 2260, 3637
PpsI	GAGTC	5 cut(s)	624, 734, 868, 2260, 3637
Ppu21I	YACGTR	3 cut(s)	167, 175, 536
PpuMI	RGGWCCY	1 cut(s)	3419
PsiI	TTATAA	1 cut(s)	3192
Psp124BI	GAGCTC	1 cut(s)	3368
Psp5II	RGGWCCY	1 cut(s)	3419
Psp6I	CCWGG	6 cut(s)	736, 1085, 1494, 1972, 2043, 3169
PspEI	GGTNACC	1 cut(s)	2742
PspGI	CCWGG	6 cut(s)	736, 1085, 1494, 1972, 2043, 3169
PspN4I	GGNNCC	7 cut(s)	1400, 1714, 2439, 2796, 2989, 3506, 3601
PspPI	GGNCC	8 cut(s)	449, 1655, 2537, 2795, 2840, 2988, 3419, 3521
PspPPI	RGGWCCY	1 cut(s)	3419
PstI	CTGCAG	2 cut(s)	1474, 2850
PsuI	RGATCY	8 cut(s)	106, 371, 716, 1136, 1398, 1762, 3384, 3392
PteI	GCGCGC	1 cut(s)	3819
PvuII	CAGCTG	1 cut(s)	3662
RsaI	GTAC	7 cut(s)	349, 833, 1971, 2194, 2963, 3472, 3695
RsaNI	GTAC	7 cut(s)	348, 832, 1970, 2193, 2962, 3471, 3694
RseI	CAYNNNNRTG	3 cut(s)	687, 756, 2210
SacI	GAGCTC	1 cut(s)	3368
SaqAI	TTAA	9 cut(s)	36, 357, 657, 1269, 1620, 1922, 2069, 3101, 3762
SatI	GCNGC	8 cut(s)	846, 1296, 2075, 2685, 2730, 3444, 3539, 3773
Sau96I	GGNCC	8 cut(s)	449, 1655, 2537, 2795, 2840, 2988, 3419, 3521
ScaI	AGTACT	1 cut(s)	2963
SchI	GAGTC	5 cut(s)	625, 735, 869, 2260, 3638
ScrFI	CCNGG	7 cut(s)	738, 1087, 1496, 1974, 2045, 2838, 3171
SduI	GDGCHC	5 cut(s)	389, 397, 2617, 2652, 3368
SexAI	ACCWGGT	1 cut(s)	1972
SfcI	CTRYAG	5 cut(s)	1470, 2002, 2196, 2846, 3339
SfuI	TTCGAA	1 cut(s)	187
SinI	GGWCC	6 cut(s)	449, 2537, 2795, 2988, 3419, 3521
SmiMI	CAYNNNNRTG	3 cut(s)	687, 756, 2210
SmlI	CTYRAG	3 cut(s)	773, 2334, 2356
SmoI	CTYRAG	3 cut(s)	773, 2334, 2356
SpeI	ACTAGT	1 cut(s)	3620
SphI	GCATGC	3 cut(s)	2011, 2691, 3676
SsiI	CCGC	8 cut(s)	140, 408, 644, 1296, 2094, 2711, 3085, 3536
SspMI	CTAG	5 cut(s)	602, 663, 1874, 3423, 3621
SstI	GAGCTC	1 cut(s)	3368
StyD4I	CCNGG	7 cut(s)	736, 1085, 1494, 1972, 2043, 2836, 3169
StyI	CCWWGG	2 cut(s)	63, 1147
TaaI	ACNGT	6 cut(s)	230, 466, 1717, 2832, 3208, 3230
TaiI	ACGT	4 cut(s)	169, 177, 538, 2983
TaqI	TCGA	7 cut(s)	17, 187, 540, 1024, 2660, 3264, 3362
TaqII	GACCGA	2 cut(s)	1091, 3005
TatI	WGTACW	1 cut(s)	2961
TauI	GCSGC	1 cut(s)	1298
TfiI	GAWTC	8 cut(s)	92, 633, 1097, 2104, 2500, 2782, 2887, 3211
Tru1I	TTAA	9 cut(s)	36, 357, 657, 1269, 1620, 1922, 2069, 3101, 3762
Tru9I	TTAA	9 cut(s)	36, 357, 657, 1269, 1620, 1922, 2069, 3101, 3762
TscAI	CASTG	6 cut(s)	394, 418, 520, 1006, 2850, 2869
TseFI	GTSAC	3 cut(s)	691, 2742, 2873
TseI	GCWGC	7 cut(s)	845, 2074, 2684, 2729, 3443, 3538, 3772
Tsp45I	GTSAC	3 cut(s)	691, 2742, 2873
TspGWI	ACGGA	3 cut(s)	35, 1818, 2446
TspRI	CASTG	6 cut(s)	394, 418, 520, 1006, 2850, 2869
Van91I	CCANNNNNTGG	1 cut(s)	3290
VneI	GTGCAC	1 cut(s)	385
VpaK11BI	GGWCC	6 cut(s)	449, 2537, 2795, 2988, 3419, 3521
XceI	RCATGY	7 cut(s)	140, 2011, 2285, 2691, 2700, 2767, 3676
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1502
XmiI	GTMKAC	1 cut(s)	3493
XmnI	GAANNNNTTC	1 cut(s)	3503
XspI	CTAG	5 cut(s)	602, 663, 1874, 3423, 3621
ZrmI	AGTACT	1 cut(s)	2963
Zsp2I	ATGCAT	6 cut(s)	976, 1336, 1450, 1744, 2520, 3057

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.