Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0012478

Physical Location & Seq

Genomic Coordinates Forward (+)

62787159 .. 62793955

Gene Structure 6797 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG457700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3837 bp

ATGGAGAAGGATATTTCGACGGATGATAATCTTATTAAGAGGAGTGATCCTATTATTGCTTCCAAGGCTGTGGGGTCTTTTGTAAAGATTGATTCTATATCCATAGATCTTGATGATGCAAATGATGACAACAGACATGCGGGGAAGTGTGAGCATTTCTCCATACGTGGTTACGTATCTGAAGTTCGAAAAAAGAACTGGAAGATATGTTGGCCATTTGCTTTAGACGGCGATTTGGACAAGTCGGATCAGGAGAAAACAGCTATGCTTCCTCCTTTGGATGCTCCAAAATTCAGATCGTGGTGTTGCCAGAATTGTCTGCGTGAAATTGGTTCTAAAGGTCATGGTACAGACCTTAATTGTCATGTTGGATCTAATTCCAAGTGCACTGGTGCTCAGATGCCACCCGCCACTGATACTGCATTGCTTCAGTCAGATTATCAACAAGGTCCGAAGTCAAAAACCGTTGAGGAAAAACAATTTCATGCTTATACTTATACTATTGTGGATGGCAGTGAGACACATCCTTCCTCACGTATCGATAAGAAAAAAAGGAATGGTGAAGTTTCACCCACAACCATCATAGCGAATGAGAATGCCCTAGCAAATTGGGTGAGTCATGAAATGCCCAGATTCAATTCTGCGGAGACAGAAGTTAACACTAGTAGGATGCAGGAGAGACATAATCATGTCACAGAAAAATTGGGTTGCAATGGATCTGTCAGAGTCTATAAGCCAGGATGTGAAAGTCATGAAGATGCCAGCCTTGAGCTTGAGATTACAAAAAACAATTGCTGGATAAGGAATTCCACTCAGAATGGCGAAACTGAATACCATTCATTTGCAGCCAACAAACAGGAGTCAATAAATGCTTCTGGACTATGTAATGGCAGGATGGTTGGCGAGGCAGGCAATCCTATCAAGGTTCAGACCAATGTTTGTCGTCCTCTGATTTTAGATGAGTGTGATTATGCATCATCTGAAAATCATGAAAAGTCCAGTGGTTTTCATCGTAAGAAAAGTCGAAAGGTGCGTTTGTTGACTGAGTTGTTGTGTAATAAAGAGGATGCAAAGACCGATTACACCAGGACAGAAGATTCTCCTTCCAATATGATCAATAATACATCTGAGATAGGATCTGTTTCCCAAGGTCAGGTGTCTCTCCAAGAAAATGTTAGAGTGGGTTCAGGTGAGAATAAAAAAAGGAAGTTGTCGGAGGAAGAAGAGAAGGGAGGCCAAGAGATGAGCCATTCAAAAATTTTGAGTAAAAAAGTTAAGACTTTTAGGCGAGATGGAGAAGCCGCCAATGCAATTGCAACTACTGGATTGGAAGAAGATGCATTGGCCAGAATTTCTTTGCAGGTTGATATGAAGAATAATTGGAGTAGATATGGAAATGAAAGGATCCATACTGTTGGTAAGAAGAAAGCTAAGAAATCTCATGACTTTGATGCATGGTCGTCCTTATCCCCAACTGCAGAAAATGTGCCAATAGAAGCCCAGGACAAATTTGGAAATTCAAGCAAGAATGCTACTAATGGTGCTTCTTTTAGACCAATGTATGATCCATCAGTTAGAGAGAGTGATTTGCACTCTTCAAAGAAAGATAGAAAATCTGGTTTTGTTAAGAGGAAAGGCAAGATGCCACAATCTGATACTGGGCCGGTTTTTCTATCAAATACAAGGAAAGATGCAGAAATCAAGGCAAATGGGCAAGGAACTGTTAGATTTCATCCAGCAGAAGATGCATCTACTGAGAAAGGGCTGGATCTTTCTCTCAACAGCTATTTGGCTACCCAAAGATATGACGGAAAATGTCTTCCTCAACAAGAAGATGGATTTCCTTCCTTGTCAACTTGGAAAGATAGCACTTGCAAACTAGATGAGTTCATGAGGAAAAATGTGGAAGTCAATTATTTGGCGAATTTAAACAAACCTTCTACATCTATGGCAAATCCATTATCTGAGGATGGAGTACCTGGTGAACCAAGTAAAAAAGTTTACTCCTACAGCATGCCCATTCTGAATGAGAGGCAAAATTACAGCTCCCAGGTTGAACAAGGGAGCTGTTCTTTAATGCAGCAAATGGATATATCTCGCGGAAGCAAGAATCAGAAAATCATTGAGGTTGAGAAAAATTCAGGTGTGCCTGTTATTAGGAAGCATAGCAACCATCAAGCTGAGATGTCTGAAAAGGGTACTATAGATGACATACCAATGGAAATTGTTGAACTCATGGCGAAAAATCAGTATGAGAGATGTCTTCATGAGACTCAAAATGATAAGCATGTATTAGAAACCCCAAGCAGAGCAAGGAATGCTCAGATGATGGAGCATACTCAATTATATGGCATTGGGGACTTGAGAGTATTAGAGGAAACCAGTCAGAAACGAAAAGCTCAGGCAAGAAATGCAAAAAATGGCACAACAAAGAAAAATGTGGCACCTGTCCAACAGAAGTCCGTTGATTATTTTCCTTATATCAATGGAAACCATTTTGGCATGAACCGTCTTGATCAAATGCATTGCACCGCAGGGTTTGGTCCATTCAGTCAGTCTCAAAAGAAGCCTTCACCACGAGGCCAATTTCCTGCTGCTGGCAACAGCAAATGTAGTTGTGCTCAAAGTTGCAAATGGGATGGAAATATGATGGGGCACAGGTTCTCGAATTCAAACTTGCAGAGCTTTGCAGCATGCAACACATGTCAGTCTGTTCCGCAATCAAAGGAAGACGCAGCTCATCTTTGGTCACCTGTAATATCAGCTCACATGCCCTTTGCTTATAAGAATCCTCAGAAGGGTCCAGCCCAGTCATCTAATGTCAAAATGGTTTCACAGTCTCCTGGCCCACTGCAGAAGGGAAATGCCACTGGGGATTGTGACCTGAGTTTGAATCTGAATGCTCCCAACTTTGAGAAGCGTAATGAAGCTGTTGGTTCTGAAACTATCAGCAGAACAAATCCAGAGTACTCGTTCACTTGCAAACGTAACGGGACTGAGCCTCATCAAAATTCATTGGGGTCATTAGATTTATATTCTAATGAAACCATACCAGCAATGCATTTGCTCAGCCTCATGGATGCAGGGATGCGGTCAGGTGCATCCTTAAATATGGGTGGAAACCCGAAATTTCCCAAGAGACCCTTTTCTAATGATCTCAACTCTAAGGGATATCCTGGGCTGGATGTTGGTCTTTATAAGGCTACTGATACTGTGAATCATCCATCATCAAACTGTTATGGGAAAAATCACCTTTCTGAGAAATCTCTCGATTTGTTTCCTACCAATCCAACTTTTGGGGCATCTACATCTTCATTTGAACACTCAAAAAGTTTTGGAAGGGCTACAGACTTTATGGATCAAGTTTCGAGCTCTCAAAAGAAAGAAAAGATCCAAAGATCCCATTCACCTGCACAGAATAGAGGTCCTAGATCACAAAAATCTTTAGCTGCTGATGGTGGTTTTGGCAACAATCGTACAACTATCCCTGTTCATAGTATACCGAAAGGGTTCCTTCCTGTTTCTGGTCCTTTGATGTTTCCGCTGCACTACCACACCATTGCAAATTCAAGGAAACACAACTTGGAAACTCCTAATGCTAATGGAACCATGAAGCCTCCAAAGACTAGTTCGGAGTCTTCAATCTGCTGTATGAACAGAAATCCAGCTGATTTCAGCATGCCAGATGTAGGAAATGGGTACATGATTAGGGGTGAAGACCTAAAAGTTGGGAAGAAGATTTCTTCTGAAAAGAGGCACGGCTTATTTAAAGTGGAGCAGCAGAAGCGGCAGAGGAATACAAAACACACTATTGAAAAGGATCGCGCGCGACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009628 GO:0009651 GO:0009791 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009910 GO:0009987 GO:0010022 GO:0010073 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0018022 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0036211 GO:0042538 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048367 GO:0048507 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070734 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1901564 GO:1902679 GO:1903506 GO:1903507 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

1278

Amino Acids

141.83

Weight (kDa)

8.88

Isoelectric Point (pI)

45.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012478)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11530 AT5G11530 AT5G11530
fragaria_vesca	FvH4_2g35880 FvH4_2g35880
malus_domestica	MD08G1116300.v1.1 MD15G1096000.v1.1
prunus_persica	Prupe.1G450900_v2.0.a1
pyrus_communis	pycom08g09700
rosa_chinensis	RchiOBHm_Chr6g0305941
rosa_laevigata	RLG00000010844
rosa_multiflora	Rmu_sc0001809.1_g000052
rosa_roxburghii	Rroxscaffold_7G00162200
rosa_rugosa	Rorug06G0345500
rosa_samantha	Rh6AG457200 Rh6BG443900 Rh6CG471200 Rh6DG457700
rosa_wichuraiana	Rw6G039890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	2784, 3198
AarI	CACCTGC	1 cut(s)	3418
Acc36I	ACCTGC	2 cut(s)	1351, 3418
AccB1I	GGYRCC	1 cut(s)	2443
AccB7I	CCANNNNNTGG	1 cut(s)	3296
AccI	GTMKAC	1 cut(s)	3499
AccII	CGCG	4 cut(s)	2100, 3825, 3827, 3829
AcoI	YGGCCR	2 cut(s)	212, 1344
AcuI	CTGAAG	2 cut(s)	201, 413
AfaI	GTAC	6 cut(s)	349, 1977, 2200, 2969, 3478, 3701
AfiI	CCNNNNNNNGG	6 cut(s)	1153, 2597, 2798, 3296, 3524, 3689
AflIII	ACRYGT	1 cut(s)	2702
AhlI	ACTAGT	2 cut(s)	662, 3626
AjnI	CCWGG	7 cut(s)	736, 1085, 1500, 1978, 2049, 2842, 3175
AjuI	GAANNNNNNNTTGG	4 cut(s)	3566, 3598, 3613, 3645
Alw21I	GWGCWC	4 cut(s)	389, 397, 2623, 3374
Alw26I	GTCTC	8 cut(s)	512, 641, 673, 1164, 2264, 2562, 2844, 3133
Alw44I	GTGCAC	1 cut(s)	385
AoxI	GGCC	6 cut(s)	212, 1234, 1344, 1661, 2581, 2845
ApaLI	GTGCAC	1 cut(s)	385
ApeKI	GCWGC	8 cut(s)	845, 2080, 2594, 2690, 2735, 3449, 3544, 3778
Asp700I	GAANNNNTTC	1 cut(s)	3509
AspLEI	GCGC	2 cut(s)	3827, 3829
AspS9I	GGNCC	7 cut(s)	449, 1661, 2543, 2801, 2846, 3425, 3527
AsuII	TTCGAA	1 cut(s)	187
AvaII	GGWCC	5 cut(s)	449, 2543, 2801, 3425, 3527
BaeGI	GKGCMC	2 cut(s)	389, 2658
BalI	TGGCCA	2 cut(s)	214, 1346
BamHI	GGATCC	1 cut(s)	1404
BanI	GGYRCC	1 cut(s)	2443
BanII	GRGCYC	1 cut(s)	3374
BauI	CACGAG	1 cut(s)	2577
BbsI	GAAGAC	5 cut(s)	1811, 2255, 2736, 3630, 3723
Bbv12I	GWGCWC	4 cut(s)	389, 397, 2623, 3374
BbvI	GCAGC	8 cut(s)	857, 2092, 2581, 2702, 2747, 3436, 3531, 3790
BceAI	ACGGC	2 cut(s)	244, 3775
BciT130I	CCWGG	7 cut(s)	738, 1087, 1502, 1980, 2051, 2844, 3177
BclI	TGATCA	2 cut(s)	1113, 2515
BcoDI	GTCTC	8 cut(s)	512, 641, 673, 1164, 2264, 2562, 2844, 3133
BcuI	ACTAGT	2 cut(s)	662, 3626
BfaI	CTAG	5 cut(s)	602, 663, 1880, 3429, 3627
BfmI	CTRYAG	5 cut(s)	1476, 2008, 2202, 2852, 3345
BfuAI	ACCTGC	2 cut(s)	1351, 3418
BglII	AGATCT	1 cut(s)	106
BlpI	GCTNAGC	1 cut(s)	3068
BmcAI	AGTACT	1 cut(s)	2969
Bme1390I	CCNGG	7 cut(s)	738, 1087, 1502, 1980, 2051, 2844, 3177
Bme18I	GGWCC	5 cut(s)	449, 2543, 2801, 3425, 3527
BmgT120I	GGNCC	7 cut(s)	449, 1661, 2543, 2801, 2846, 3425, 3527
BmiI	GGNNCC	5 cut(s)	1406, 2445, 2802, 3512, 3607
BmrFI	CCNGG	7 cut(s)	738, 1087, 1502, 1980, 2051, 2844, 3177
BmrI	ACTGGG	3 cut(s)	1668, 2803, 2880
BmuI	ACTGGG	3 cut(s)	1668, 2803, 2880
BpiI	GAAGAC	5 cut(s)	1811, 2255, 2736, 3630, 3723
BplI	GAGNNNNNCTC	2 cut(s)	143, 175
Bpu10I	CCTNAGC	1 cut(s)	2400
Bpu1102I	GCTNAGC	1 cut(s)	3068
Bpu14I	TTCGAA	1 cut(s)	187
BpuEI	CTTGAG	3 cut(s)	788, 794, 2383
Bsa29I	ATCGAT	1 cut(s)	540
BsaAI	YACGTR	3 cut(s)	167, 175, 536
BsaBI	GATNNNNATC	1 cut(s)	27
BsaI	GGTCTC	1 cut(s)	3133
BsaJI	CCNNGG	5 cut(s)	63, 1147, 1500, 2049, 3176
Bsc4I	CCNNNNNNNGG	6 cut(s)	1153, 2597, 2798, 3296, 3524, 3689
Bse118I	RCCGGY	1 cut(s)	1663
Bse1I	ACTGG	8 cut(s)	203, 394, 999, 1327, 1663, 2382, 2809, 2875
Bse3DI	GCAATG	5 cut(s)	422, 718, 2524, 3063, 3558
Bse8I	GATNNNNATC	1 cut(s)	27
BseBI	CCWGG	7 cut(s)	738, 1087, 1502, 1980, 2051, 2844, 3177
BseCI	ATCGAT	1 cut(s)	540
BseDI	CCNNGG	5 cut(s)	63, 1147, 1500, 2049, 3176
BseJI	GATNNNNATC	1 cut(s)	27
BseLI	CCNNNNNNNGG	6 cut(s)	1153, 2597, 2798, 3296, 3524, 3689
BseMI	GCAATG	5 cut(s)	422, 718, 2524, 3063, 3558
BseNI	ACTGG	8 cut(s)	203, 394, 999, 1327, 1663, 2382, 2809, 2875
BsePI	GCGCGC	1 cut(s)	3825
BseRI	GAGGAG	1 cut(s)	55
BseSI	GKGCMC	2 cut(s)	389, 2658
BseXI	GCAGC	8 cut(s)	857, 2092, 2581, 2702, 2747, 3436, 3531, 3790
BsgI	GTGCAG	2 cut(s)	3396, 3530
Bsh1236I	CGCG	4 cut(s)	2100, 3825, 3827, 3829
BshFI	GGCC	6 cut(s)	214, 1236, 1346, 1663, 2583, 2847
BshNI	GGYRCC	1 cut(s)	2443
BshVI	ATCGAT	1 cut(s)	540
BsiHKAI	GWGCWC	4 cut(s)	389, 397, 2623, 3374
BsiSI	CCGG	1 cut(s)	1664
BslFI	GGGAC	2 cut(s)	2372, 3007
BslI	CCNNNNNNNGG	6 cut(s)	1153, 2597, 2798, 3296, 3524, 3689
BsmAI	GTCTC	8 cut(s)	512, 641, 673, 1164, 2264, 2562, 2844, 3133
BsmFI	GGGAC	2 cut(s)	2372, 3007
BsmI	GAATGC	4 cut(s)	601, 1534, 2323, 2905
BsnI	GGCC	6 cut(s)	214, 1236, 1346, 1663, 2583, 2847
Bso31I	GGTCTC	1 cut(s)	3133
Bsp119I	TTCGAA	1 cut(s)	187
Bsp1286I	GDGCHC	5 cut(s)	389, 397, 2623, 2658, 3374
Bsp1720I	GCTNAGC	1 cut(s)	3068
BspANI	GGCC	6 cut(s)	214, 1236, 1346, 1663, 2583, 2847
BspDI	ATCGAT	1 cut(s)	540
BspFNI	CGCG	4 cut(s)	2100, 3825, 3827, 3829
BspHI	TCATGA	6 cut(s)	619, 751, 988, 1441, 1890, 2266
BspLI	GGNNCC	5 cut(s)	1406, 2445, 2802, 3512, 3607
BspMAI	CTGCAG	2 cut(s)	1480, 2856
BspMI	ACCTGC	2 cut(s)	1351, 3418
BspT104I	TTCGAA	1 cut(s)	187
BspT107I	GGYRCC	1 cut(s)	2443
BspTNI	GGTCTC	1 cut(s)	3133
BsrDI	GCAATG	5 cut(s)	422, 718, 2524, 3063, 3558
BsrFI	RCCGGY	1 cut(s)	1663
BsrI	ACTGG	8 cut(s)	203, 394, 999, 1327, 1663, 2382, 2809, 2875
BssAI	RCCGGY	1 cut(s)	1663
BssECI	CCNNGG	5 cut(s)	63, 1147, 1500, 2049, 3176
BssHII	GCGCGC	1 cut(s)	3825
BssNAI	GTATAC	1 cut(s)	3500
BssSI	CACGAG	1 cut(s)	2577
BssT1I	CCWWGG	2 cut(s)	63, 1147
Bst1107I	GTATAC	1 cut(s)	3500
Bst2BI	CACGAG	1 cut(s)	2577
Bst2UI	CCWGG	7 cut(s)	738, 1087, 1502, 1980, 2051, 2844, 3177
Bst4CI	ACNGT	7 cut(s)	466, 1414, 1723, 2510, 2838, 3214, 3236
Bst6I	CTCTTC	2 cut(s)	1218, 1600
BstAPI	GCANNNNNTGC	3 cut(s)	1745, 2318, 2411
BstBAI	YACGTR	3 cut(s)	167, 175, 536
BstBI	TTCGAA	1 cut(s)	187
BstC8I	GCNNGC	7 cut(s)	763, 910, 2015, 2599, 2695, 3680, 3827
BstEII	GGTNACC	1 cut(s)	2748
BstFNI	CGCG	4 cut(s)	2100, 3825, 3827, 3829
BstHHI	GCGC	2 cut(s)	3827, 3829
BstMAI	GTCTC	8 cut(s)	512, 641, 673, 1164, 2264, 2562, 2844, 3133
BstMWI	GCNNNNNNNGC	8 cut(s)	65, 909, 1307, 1745, 2318, 2411, 3784, 3787
BstNI	CCWGG	7 cut(s)	738, 1087, 1502, 1980, 2051, 2844, 3177
BstNSI	RCATGY	7 cut(s)	140, 2017, 2291, 2697, 2706, 2773, 3682
BstPI	GGTNACC	1 cut(s)	2748
BstSCI	CCNGG	7 cut(s)	736, 1085, 1500, 1978, 2049, 2842, 3175
BstSFI	CTRYAG	5 cut(s)	1476, 2008, 2202, 2852, 3345
BstSLI	GKGCMC	2 cut(s)	389, 2658
BstSNI	TACGTA	1 cut(s)	175
BstUI	CGCG	4 cut(s)	2100, 3825, 3827, 3829
BstV1I	GCAGC	8 cut(s)	857, 2092, 2581, 2702, 2747, 3436, 3531, 3790
BstV2I	GAAGAC	5 cut(s)	1811, 2255, 2736, 3630, 3723
BstX2I	RGATCY	8 cut(s)	106, 371, 716, 1136, 1404, 1768, 3390, 3398
BstXI	CCANNNNNNTGG	2 cut(s)	70, 1415
BstYI	RGATCY	8 cut(s)	106, 371, 716, 1136, 1404, 1768, 3390, 3398
BstZ17I	GTATAC	1 cut(s)	3500
Bsu15I	ATCGAT	1 cut(s)	540
BsuRI	GGCC	6 cut(s)	214, 1236, 1346, 1663, 2583, 2847
BsuTUI	ATCGAT	1 cut(s)	540
BtsI	GCAGTG	2 cut(s)	520, 2849
BtsIMutI	CAGTG	6 cut(s)	387, 411, 520, 1006, 2849, 2868
BveI	ACCTGC	2 cut(s)	1351, 3418
Cac8I	GCNNGC	7 cut(s)	763, 910, 2015, 2599, 2695, 3680, 3827
CciI	TCATGA	6 cut(s)	619, 751, 988, 1441, 1890, 2266
CfoI	GCGC	2 cut(s)	3827, 3829
Cfr10I	RCCGGY	1 cut(s)	1663
Cfr13I	GGNCC	7 cut(s)	449, 1661, 2543, 2801, 2846, 3425, 3527
ClaI	ATCGAT	1 cut(s)	540
CseI	GACGC	1 cut(s)	2741
CsiI	ACCWGGT	1 cut(s)	1978
Csp6I	GTAC	6 cut(s)	348, 1976, 2199, 2968, 3477, 3700
CviQI	GTAC	6 cut(s)	348, 1976, 2199, 2968, 3477, 3700
DraI	TTTAAA	2 cut(s)	1929, 3769
EaeI	YGGCCR	2 cut(s)	212, 1344
Eam1104I	CTCTTC	2 cut(s)	1218, 1600
EarI	CTCTTC	2 cut(s)	1218, 1600
Ecl136II	GAGCTC	1 cut(s)	3372
Eco105I	TACGTA	1 cut(s)	175
Eco130I	CCWWGG	2 cut(s)	63, 1147
Eco24I	GRGCYC	1 cut(s)	3374
Eco31I	GGTCTC	1 cut(s)	3133
Eco32I	GATATC	1 cut(s)	3173
Eco47I	GGWCC	5 cut(s)	449, 2543, 2801, 3425, 3527
Eco53kI	GAGCTC	1 cut(s)	3372
Eco57I	CTGAAG	2 cut(s)	201, 413
Eco91I	GGTNACC	1 cut(s)	2748
EcoICRI	GAGCTC	1 cut(s)	3372
EcoO109I	RGGNCCY	1 cut(s)	3425
EcoO65I	GGTNACC	1 cut(s)	2748
EcoRI	GAATTC	2 cut(s)	805, 2668
EcoRII	CCWGG	7 cut(s)	736, 1085, 1500, 1978, 2049, 2842, 3175
EcoRV	GATATC	1 cut(s)	3173
EcoT14I	CCWWGG	2 cut(s)	63, 1147
EcoT22I	ATGCAT	6 cut(s)	976, 1342, 1456, 1750, 2526, 3063
EcoT38I	GRGCYC	1 cut(s)	3374
ErhI	CCWWGG	2 cut(s)	63, 1147
FalI	AAGNNNNNCTT	4 cut(s)	3128, 3160, 3498, 3530
FaqI	GGGAC	2 cut(s)	2372, 3007
FauI	CCCGC	2 cut(s)	133, 415
FbaI	TGATCA	2 cut(s)	1113, 2515
FblI	GTMKAC	1 cut(s)	3499
FriOI	GRGCYC	1 cut(s)	3374
FspBI	CTAG	5 cut(s)	602, 663, 1880, 3429, 3627
GlaI	GCGC	2 cut(s)	3826, 3828
HaeIII	GGCC	6 cut(s)	214, 1236, 1346, 1663, 2583, 2847
HapII	CCGG	1 cut(s)	1664
HgaI	GACGC	1 cut(s)	2741
HhaI	GCGC	2 cut(s)	3827, 3829
Hin6I	GCGC	2 cut(s)	3825, 3827
HinP1I	GCGC	2 cut(s)	3825, 3827
HincII	GTYRAC	3 cut(s)	658, 1041, 1854
HindII	GTYRAC	3 cut(s)	658, 1041, 1854
HpaI	GTTAAC	1 cut(s)	658
HpaII	CCGG	1 cut(s)	1664
Hpy166II	GTNNAC	8 cut(s)	387, 658, 1041, 1854, 1985, 2002, 2976, 3500
Hpy8I	GTNNAC	8 cut(s)	387, 658, 1041, 1854, 1985, 2002, 2976, 3500
Hpy99I	CGWCG	1 cut(s)	22
HpyCH4III	ACNGT	7 cut(s)	466, 1414, 1723, 2510, 2838, 3214, 3236
HpyCH4IV	ACGT	4 cut(s)	166, 174, 535, 2986
HpyF10VI	GCNNNNNNNGC	8 cut(s)	65, 909, 1307, 1745, 2318, 2411, 3784, 3787
HpySE526I	ACGT	4 cut(s)	166, 174, 535, 2986
HspAI	GCGC	2 cut(s)	3825, 3827
Ksp22I	TGATCA	2 cut(s)	1113, 2515
KspAI	GTTAAC	1 cut(s)	658
LmnI	GCTCC	6 cut(s)	289, 2051, 2064, 2332, 2908, 3775
Lsp1109I	GCAGC	8 cut(s)	857, 2092, 2581, 2702, 2747, 3436, 3531, 3790
MabI	ACCWGGT	1 cut(s)	1978
MaeI	CTAG	5 cut(s)	602, 663, 1880, 3429, 3627
MaeII	ACGT	4 cut(s)	166, 174, 535, 2986
MaeIII	GTNAC	5 cut(s)	170, 691, 2748, 2879, 2987
MauBI	CGCGCGCG	1 cut(s)	3825
MfeI	CAATTG	2 cut(s)	790, 1311
MflI	RGATCY	8 cut(s)	106, 371, 716, 1136, 1404, 1768, 3390, 3398
MhlI	GDGCHC	5 cut(s)	389, 397, 2623, 2658, 3374
MlsI	TGGCCA	2 cut(s)	214, 1346
MluNI	TGGCCA	2 cut(s)	214, 1346
MlyI	GAGTC	5 cut(s)	625, 735, 869, 2266, 3644
MmeI	TCCRAC	5 cut(s)	225, 349, 1194, 2476, 3314
Mox20I	TGGCCA	2 cut(s)	214, 1346
Mph1103I	ATGCAT	6 cut(s)	976, 1342, 1456, 1750, 2526, 3063
MroXI	GAANNNNTTC	1 cut(s)	3509
MscI	TGGCCA	2 cut(s)	214, 1346
MseI	TTAA	9 cut(s)	36, 357, 657, 1275, 1626, 1928, 2075, 3107, 3768
MslI	CAYNNNNRTG	3 cut(s)	687, 756, 2216
Msp20I	TGGCCA	2 cut(s)	214, 1346
MspA1I	CMGCKG	2 cut(s)	3544, 3668
MspI	CCGG	1 cut(s)	1664
MspR9I	CCNGG	7 cut(s)	738, 1087, 1502, 1980, 2051, 2844, 3177
MunI	CAATTG	2 cut(s)	790, 1311
Mva1269I	GAATGC	4 cut(s)	601, 1534, 2323, 2905
MvaI	CCWGG	7 cut(s)	738, 1087, 1502, 1980, 2051, 2844, 3177
MvnI	CGCG	4 cut(s)	2100, 3825, 3827, 3829
MwoI	GCNNNNNNNGC	8 cut(s)	65, 909, 1307, 1745, 2318, 2411, 3784, 3787
NlaIV	GGNNCC	5 cut(s)	1406, 2445, 2802, 3512, 3607
NmuCI	GTSAC	3 cut(s)	691, 2748, 2879
NsiI	ATGCAT	6 cut(s)	976, 1342, 1456, 1750, 2526, 3063
NspI	RCATGY	7 cut(s)	140, 2017, 2291, 2697, 2706, 2773, 3682
NspV	TTCGAA	1 cut(s)	187
PaeI	GCATGC	3 cut(s)	2017, 2697, 3682
PagI	TCATGA	6 cut(s)	619, 751, 988, 1441, 1890, 2266
PaqCI	CACCTGC	1 cut(s)	3418
PauI	GCGCGC	1 cut(s)	3825
PciI	ACATGT	1 cut(s)	2702
PcsI	WCGNNNNNNNCGW	1 cut(s)	1030
PctI	GAATGC	4 cut(s)	601, 1534, 2323, 2905
PdmI	GAANNNNTTC	1 cut(s)	3509
PfeI	GAWTC	7 cut(s)	92, 633, 1097, 2110, 2788, 2893, 3217
PflMI	CCANNNNNTGG	1 cut(s)	3296
PleI	GAGTC	5 cut(s)	624, 734, 868, 2266, 3643
PpsI	GAGTC	5 cut(s)	624, 734, 868, 2266, 3643
Ppu21I	YACGTR	3 cut(s)	167, 175, 536
PpuMI	RGGWCCY	1 cut(s)	3425
PscI	ACATGT	1 cut(s)	2702
PsiI	TTATAA	2 cut(s)	2784, 3198
Psp124BI	GAGCTC	1 cut(s)	3374
Psp5II	RGGWCCY	1 cut(s)	3425
Psp6I	CCWGG	7 cut(s)	736, 1085, 1500, 1978, 2049, 2842, 3175
PspEI	GGTNACC	1 cut(s)	2748
PspGI	CCWGG	7 cut(s)	736, 1085, 1500, 1978, 2049, 2842, 3175
PspN4I	GGNNCC	5 cut(s)	1406, 2445, 2802, 3512, 3607
PspPI	GGNCC	7 cut(s)	449, 1661, 2543, 2801, 2846, 3425, 3527
PspPPI	RGGWCCY	1 cut(s)	3425
PsrI	GAACNNNNNNTAC	2 cut(s)	168, 200
PstI	CTGCAG	2 cut(s)	1480, 2856
PsuI	RGATCY	8 cut(s)	106, 371, 716, 1136, 1404, 1768, 3390, 3398
PteI	GCGCGC	1 cut(s)	3825
PvuII	CAGCTG	1 cut(s)	3668
RsaI	GTAC	6 cut(s)	349, 1977, 2200, 2969, 3478, 3701
RsaNI	GTAC	6 cut(s)	348, 1976, 2199, 2968, 3477, 3700
RseI	CAYNNNNRTG	3 cut(s)	687, 756, 2216
SacI	GAGCTC	1 cut(s)	3374
SaqAI	TTAA	9 cut(s)	36, 357, 657, 1275, 1626, 1928, 2075, 3107, 3768
Sau96I	GGNCC	7 cut(s)	449, 1661, 2543, 2801, 2846, 3425, 3527
ScaI	AGTACT	1 cut(s)	2969
SchI	GAGTC	5 cut(s)	625, 735, 869, 2266, 3644
ScrFI	CCNGG	7 cut(s)	738, 1087, 1502, 1980, 2051, 2844, 3177
SduI	GDGCHC	5 cut(s)	389, 397, 2623, 2658, 3374
SexAI	ACCWGGT	1 cut(s)	1978
SfcI	CTRYAG	5 cut(s)	1476, 2008, 2202, 2852, 3345
SfuI	TTCGAA	1 cut(s)	187
SinI	GGWCC	5 cut(s)	449, 2543, 2801, 3425, 3527
SmiMI	CAYNNNNRTG	3 cut(s)	687, 756, 2216
SmlI	CTYRAG	3 cut(s)	767, 773, 2362
SmoI	CTYRAG	3 cut(s)	767, 773, 2362
SnaBI	TACGTA	1 cut(s)	175
SpeI	ACTAGT	2 cut(s)	662, 3626
SphI	GCATGC	3 cut(s)	2017, 2697, 3682
SspMI	CTAG	5 cut(s)	602, 663, 1880, 3429, 3627
SstI	GAGCTC	1 cut(s)	3374
StyD4I	CCNGG	7 cut(s)	736, 1085, 1500, 1978, 2049, 2842, 3175
StyI	CCWWGG	2 cut(s)	63, 1147
TaaI	ACNGT	7 cut(s)	466, 1414, 1723, 2510, 2838, 3214, 3236
TaiI	ACGT	4 cut(s)	169, 177, 538, 2989
TaqI	TCGA	7 cut(s)	17, 187, 540, 1024, 2666, 3270, 3368
TaqII	GACCGA	1 cut(s)	1091
TatI	WGTACW	1 cut(s)	2967
TauI	GCSGC	2 cut(s)	1304, 3790
TfiI	GAWTC	7 cut(s)	92, 633, 1097, 2110, 2788, 2893, 3217
Tru1I	TTAA	9 cut(s)	36, 357, 657, 1275, 1626, 1928, 2075, 3107, 3768
Tru9I	TTAA	9 cut(s)	36, 357, 657, 1275, 1626, 1928, 2075, 3107, 3768
TscAI	CASTG	6 cut(s)	394, 418, 520, 1006, 2856, 2875
TseFI	GTSAC	3 cut(s)	691, 2748, 2879
TseI	GCWGC	8 cut(s)	845, 2080, 2594, 2690, 2735, 3449, 3544, 3778
Tsp45I	GTSAC	3 cut(s)	691, 2748, 2879
TspGWI	ACGGA	3 cut(s)	35, 1824, 2452
TspRI	CASTG	6 cut(s)	394, 418, 520, 1006, 2856, 2875
Van91I	CCANNNNNTGG	1 cut(s)	3296
VneI	GTGCAC	1 cut(s)	385
VpaK11BI	GGWCC	5 cut(s)	449, 2543, 2801, 3425, 3527
XceI	RCATGY	7 cut(s)	140, 2017, 2291, 2697, 2706, 2773, 3682
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1508
XmiI	GTMKAC	1 cut(s)	3499
XmnI	GAANNNNTTC	1 cut(s)	3509
XspI	CTAG	5 cut(s)	602, 663, 1880, 3429, 3627
ZrmI	AGTACT	1 cut(s)	2969
Zsp2I	ATGCAT	6 cut(s)	976, 1342, 1456, 1750, 2526, 3063

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.