Rorug06G0345500

protein EMBRYONIC FLOWER

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
49635113 .. 49645779
10667 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0345500.1

Sequence Viewer

Length: 4731 bp
ATGATTTCTGTGGGGAGTAGGGATGCGAGGAAGGGGCTAGGGTTAGGGTTAGGGTTCGGAGCTGGGAGAGAGATGGACGATTCCGAGCTTGAAGAAGGCGAGGCGTGTTCTTCTCAAATCAATGAATACGATCCCAATATCGACCCCGACGTTGCTCTCGCCTACATCGATGATAAAATTCAGGATGTTTTGGGACACTTTCAGAAAGATTTTGAAGGTGGGGTGGTGTCTGCAGAGAATCTAGGGGCAAAGTTTGGTGGGTATGGCTCATTTTTACCTAGCTATCAGCGGTCTCCAGTGTGGTCTCATCCGAGGACTCCAGCAAAAAGTCAGAATTATGGCTTACCCAAATCTCCCAACAGTTTAAAACTCGAGGGTGGCCATCGTAACAATTCTAGTTGTTATGCTGTATCTCAGTCTGTTGGACTTGGAACTGCTTCTGCCAGTTCCATTTCACTCGTTGCACCAAAGGCACCATCAGCAAACATTCCAGTCAAACAAGATGTGAGTGTTTCATATAATCAAGCTGACCAGTATCCTCCTGAACAGGAATCCGCAACAAAGAGACCTATTAAATTATCGGACCAGAAAACTCTCAAGGTACGGCTTAGGGTGGGCTCGGATAACTTGTCGACACGAAAAAATGATATCTACAGTGGGCTTGGCCTTGACGGTACACCATCTTCCTCACTAGATGATTCTTCAGATAGTGAAGGAATATCTCATGGACCTCAAGATGCCCCATTTGAATCTCCCACTAGTATTCTCCAGATTATGACATCCTGTCCGGTGTATGAGGGTATGCTTTTGTCACCTCTTCCGGAGGATCTAATTTATTTAACTGAAAAGGATAAGGTTGCAAAAGAAGTTAGATCTCTTCCAAGGGATGGTTTGGAAAGATCTGGGTTCCTAGTGAATGGAGCAAATACCAGGGAAGGTGGTGGGAAAGTGTCTGGGGCAAGGAAAACTAAATCAGTTGAAAGAAATGATTTTTCAGCAGAATCAAAGAGCGGGATCAATAAGGATGGAATTGGGCTTCTGGCAAACAAGGACCAAGATGTTGATACATTTGCTTGTGAGGAGCTTGTTTCTAAAACCTTGAAGCTCCCACTTCTATCCAATTCATACTCTTCTGTCAATGATGTGAAAAAGAGTAAAGAAGCAGATAAGAATGCTGGAAGGGATAAAGGCTTCCCTTGTCAACCAGAAGATGAGCCTATGGAGCCAACATTCAATCAAGAGCAAAACTGGGTTGAAAAGCGAAAAGCCAGTTTGGCTGGAAAGGTTCAGGGAGACAGAAAAGTAAGTTCTAACAATAATGTTTCGGTACATTTAAAGAAAGATGGCCATCACAAAGGAGAGAAAGGTAATGAATCAGTAAAAGCTGACTCAAATGTATCTAAAGGGAGGAAATCTTTAAGTACTGAAGTTGTGGACCACTCAAAGCAAAGGGTCAGTCAGAAGGGTATAGCCCATGAGGTAGATGATATGAGATTACTTTCTGGGAAGGAGCAGCCCTTACTTGGCGAAAAATGGAAATCAAAAGAAATTCCAAGGACCCTGGTTACAGACTTTCCAAAAGAAAGCTCCAGGGTTGGTTCTGCTTCAGTGCCCAAAGTGAAGAGTGCTCATGTGAACAAGCTTACATCCAATAGTGAGTCAGAAAACTTCAGAAAGGATCTTGATAAAAGCAGGGATACATATAGAGATTTCTTTGGGGATGAAGAAGAAGAGAACCAAACTGATTCATTGCAATTGCCTTCTGAAGATAAGCTTAAGGAGCCTGATGCTGTTGCAAAAAGCACATCTGCAGTTAACATTTCATCAAGAGAGAAACCAAATGGCAAGACAGTTGATTCACATCCGGTAACAGCTTCAAATATAGCTCAACGCCCTGGAAACGGACCCATTTCTGATGTAGCTCCTGCAACAGGGGCTCCTGCATTAATGGAAGACTATTGGGTGCAGTGTGACAAGTGTCTAAAATGGCGGCTTCTTCCGCATGGTACAACCCCCGACAACTTACCAGAAAAGTGGCTATGTAGCATGCTTAATTGGCTGCCTGGGATGAACCGGTGTAGTGTAACAGAGGAGGAAACAACAGACAAGACAAAAGCTCTAATTGCACAGTACCAAGTTCCTGCCCTTGGCAGTCAAAATAATCTTCCCAATAATCCTGGTGGCTTTATGGAAGGCGTTGCACAAGCTGATTTTCGTCACCCTGATCAAAACCCCCAAAATTTTGGTTTGCATGCCATGCCTGGCAGCGGGAAGAAAAAAAATGGATTGAAAGAATTGTCAAAGGCAAGTGATAAAGATGGTTCTATTCTGCTGCCAAACTCTATGAAGAAGAACATACAGGCATCACTGAAGAGTAAAAGCTTGAATGATGTTAACCAATCTTCACCTCTGAATGAGCCTAATTTTCAGCAGCTGAGCAATTCCAGTGACTTGGCAGTGGAGAAACGGAAGCACAAGTACAAAGAGAAGCAAAAAGTTTTAGCTTCCTCTTATGATGGAGGTCCTATCAACAATTTAAAGATTAAGAGCAGAAGGGACTTTGATCCAGATACTTCTAGACCACCCAAGAAAATCAAGAGCAATGGTAGGCGTATGACTGATGAAGAATGGGCATCAGATCACCACGGACCAGATGGCGAGATTGGTCCTAGCTCAAGTAGTGGTTTTCTGACTACTGAAGCAGGAAAAGATCGAATTAAGGATAGGATAGAGGCTGCTACTCTTACCAAGGTAAAAGATGAAGTTTGTAGAGACAATGGATCCGTAGACATGGGTAATGTTTCTAGAGATAGAACAAAAAAGAGAAAATTGAAGGAATATCCTGAAATTCATATGGGTTCCCTTCCAGATCGTTCCATTGCAGTGAAGGAGGAGTTTAGTGAGAATGACTGTAGGAAGGAAAAGAAGGCGAGGGTATCTAAATCTGAGGGAAAAGAGTCCAGTGCAAGCAAAGGCAGTGGTAGAACAGACAAGAAGAGCAGCCATTCAAAGAAGCAACAACGTGGAAAAGATATAAGCAGCAGACTAACTCAACGGAGTCAGAATGGTATGGAATCTTTGAAAAAAGATTTGGGATCTGTTCAGGTTTCTGTGGCTGCCACTTCAAGCTCTTCTAAAGTTTCTGGTTCTCAAAAGACCAAATCCAGCTTTCAAGAAATTAAAGGTTCACCTGTAGAATCTGTTTCATCATCACCTATGAGAATCTTAAATCCTGATAAGCATGAATTAGTACTCGGGGTAAAGGACGAGTCACAAGACACTGGTCGTTTTGCATTACGTAGCCCGCGGAGATGCTCAGATGATGAAGATGACTGCAGGATTGATCGATCTGGGACAGCAAGGAAGGAAAAAATTTCCTCCGGGGCTTATCGTAGGTCTGAGAAGGTGAACAAATTGCAGGAGAAGGTGAACAAATATGGTGAAACTGAGAACAAATATGTCAGTAAGAAAGATTTGCCGGGAAAGTCTTTGAATGAGGGTAGTAAAAGGGAGAGCCAGTCTAATTTTGGGGGTCGTGATGGCCCAGATGTTAGACTAGATGCTATTTACCCAAAAGACACGATTTCTACTCCAAAGAAGCAGCCAGATTCTGATAGTGAAAGGTCTTCAAAGAGGATCCCTTCTGAAAGAACTGATCGAGTGGATACAGGCTCAACAAGGGGGAAGTCACTACCCTTGCCACCCTCTGGAGGAGCTCAAAATGAGATGATGACTCGTTGTCCCCGACCAGTTTCTGGCTCTCACAAAGGTAATGGAGCAGATATATTACAAGTAGATGGCTCTGAAGGTAATGATGTGGTCAAGGTGCAAGTACAGACCAGAAGGGCTGATACTCAGAATGGAACTCAGCATACTAGTTCAAGACATCGTGCACAGAATGGGCACAGGGGCAGGGATCTTGATGCCCCTAGTCCAGCTAGAAGGGATTCTTCCACCCCGGCTTATATCACTATTCTAAAAGAAGCTAAAGATATGAAACACCTTGCTGATCGTCTCAAGAACTCTCAGTCAAATGATAGTACGGGGCTTTACTTCCAGGCAGTCCTCAAATTTCTTCACGCTGCATCTCTCTTGGAATCTCCCAACATTGACAGTGCCAAGCAAAATGAGTCCATGCAAATTTATAGAAGCACTGCGGCACTATGCCAGTTTTGTGCTCATGAATATGAAAAATCCAAAGACATGGCTTCTGCTGCTTTAGCCTTCAAATGCTTGGAGGTGGCTTATCTGAAGGTGATATACTCATCGCATTCCAATGCAGGCAGAGATCGACATGAGTTACAAACAGCTTTACAGATGGGTCCTCCTGGTGAATCTCCATCTTCCTCTGCCTCTGATGTTGATAACTTGAACAATCCCTCAGCAGTAGACAAGGTTGCCTTACCCAAGGGTGTTAGCTCACCCCAAGTTGCTGGAAACCATGTAATTGCTGCTCGAAATCGTCCCAATTTTGTGCGCATGCTGAAATTTACACAAGATGTACATAATGCAATGGACGCATCAAAGAAATCACGTGTTGCTTTTGCAGCTGCTGATACAAAAATGGGAGAAGCTAAGTATTCTGAATGCATCTCTTCCATTAAAAGGGCTCTTGACTTTAACTTCCAAGATGTAGAGGGATTACTACGTTTGGTACGGCTTGCAATGGAAGCCATTTTCAATATCCGTCAGAAGAGTCCAGACGGTGGTGGGGATGATGCTAATCTATGA

Protein Analysis

1576

Amino Acids

172.15

Weight (kDa)

8.92

Isoelectric Point (pI)

43.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CW PF07496 653 - 699 4.7e-18 CW-type Zinc Finger
THD_CWZF3-5-7 PF24756 1308 - 1559 9.9e-86 CWZF3-5-7 THD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012478)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 4478
AccB1I GGYRCC 1 cut(s) 472
AccB7I CCANNNNNTGG 4 cut(s) 887, 3707, 3755, 4706
AccBSI CCGCTC 1 cut(s) 1011
AccI GTMKAC 3 cut(s) 632, 2787, 4389
AccII CGCG 1 cut(s) 3307
AccIII TCCGGA 1 cut(s) 820
AciI CCGC 9 cut(s) 289, 555, 1011, 1990, 2000, 2268, 3305, 3307, 4157
AcoI YGGCCR 2 cut(s) 379, 1345
AcsI RAATTY 8 cut(s) 177, 1548, 2239, 2847, 3372, 4070, 4140, 4487
AcuI CTGAAG 9 cut(s) 687, 1446, 1590, 1654, 1785, 2390, 2718, 3825, 4271
AcvI CACGTG 1 cut(s) 4535
AflII CTTAAG 1 cut(s) 1775
AflIII ACRYGT 1 cut(s) 4534
AgeI ACCGGT 1 cut(s) 2073
AhdI GACNNNNNGTC 2 cut(s) 783, 3738
AhlI ACTAGT 2 cut(s) 758, 3875
AjnI CCWGG 9 cut(s) 929, 1560, 1589, 1894, 2062, 2176, 2260, 4056, 4327
AjuI GAANNNNNNNTTGG 2 cut(s) 3074, 3106
Alw21I GWGCWC 4 cut(s) 1630, 3718, 3895, 4180
Alw26I GTCTC 6 cut(s) 297, 309, 559, 1287, 2766, 4019
Alw44I GTGCAC 1 cut(s) 3891
AlwNI CAGNNNCTG 4 cut(s) 2434, 3611, 3755, 4553
Ama87I CYCGRG 2 cut(s) 371, 3254
Aor13HI TCCGGA 1 cut(s) 820
AoxI GGCC 4 cut(s) 379, 664, 1345, 3541
ApaLI GTGCAC 1 cut(s) 3891
ApoI RAATTY 8 cut(s) 177, 1548, 2239, 2847, 3372, 4070, 4140, 4487
ArsI GACNNNNNNTTYG 2 cut(s) 1441, 1473
AseI ATTAAT 1 cut(s) 1946
AsiGI ACCGGT 1 cut(s) 2073
Asp700I GAANNNNTTC 2 cut(s) 436, 3946
AspLEI GCGC 1 cut(s) 4479
AsuC2I CCSGG 3 cut(s) 3382, 3480, 3959
AvaI CYCGRG 2 cut(s) 371, 3254
BaeGI GKGCMC 3 cut(s) 1614, 3895, 3906
BalI TGGCCA 2 cut(s) 381, 1347
BamHI GGATCC 2 cut(s) 2780, 3636
BanI GGYRCC 1 cut(s) 472
BanII GRGCYC 4 cut(s) 620, 1939, 3718, 4612
BarI GAAGNNNNNNTAC 8 cut(s) 667, 699, 2462, 2494, 3835, 3867, 4244, 4276
BbrPI CACGTG 1 cut(s) 4535
BbsI GAAGAC 2 cut(s) 1959, 3618
Bbv12I GWGCWC 4 cut(s) 1630, 3718, 3895, 4180
BbvCI CCTCAGC 1 cut(s) 4381
BceAI ACGGC 2 cut(s) 620, 4673
BciT130I CCWGG 9 cut(s) 931, 1562, 1591, 1896, 2064, 2178, 2262, 4058, 4329
BciVI GTATCC 3 cut(s) 546, 1690, 3658
BclI TGATCA 1 cut(s) 2224
BcnI CCSGG 3 cut(s) 3382, 3480, 3959
BcoDI GTCTC 6 cut(s) 297, 309, 559, 1287, 2766, 4019
BcuI ACTAGT 2 cut(s) 758, 3875
BfmI CTRYAG 6 cut(s) 231, 652, 1809, 2911, 3192, 3334
BfrI CTTAAG 1 cut(s) 1775
BfuI GTATCC 3 cut(s) 546, 1690, 3658
BglI GCCNNNNNGGC 1 cut(s) 1274
BglII AGATCT 2 cut(s) 872, 899
BlpI GCTNAGC 1 cut(s) 2435
BmcAI AGTACT 2 cut(s) 1423, 3252
BmeRI GACNNNNNGTC 2 cut(s) 783, 3738
BmeT110I CYCGRG 2 cut(s) 371, 3254
BmrI ACTGGG 1 cut(s) 1258
BmuI ACTGGG 1 cut(s) 1258
BoxI GACNNNNGTC 2 cut(s) 1977, 3282
BpiI GAAGAC 2 cut(s) 1959, 3618
BpmI CTGGAG 5 cut(s) 279, 303, 752, 1573, 3729
Bpu10I CCTNAGC 2 cut(s) 608, 4381
Bpu1102I GCTNAGC 1 cut(s) 2435
BpuEI CTTGAG 4 cut(s) 581, 717, 2659, 4001
BpuMI CCSGG 3 cut(s) 3382, 3480, 3959
Bsa29I ATCGAT 2 cut(s) 168, 3346
BsaAI YACGTR 2 cut(s) 3299, 4535
BsaBI GATNNNNATC 3 cut(s) 1347, 1860, 4722
BsaI GGTCTC 3 cut(s) 297, 309, 559
BsaWI WCCGGW 4 cut(s) 787, 820, 1864, 2073
BsaXI ACNNNNNCTCC 4 cut(s) 1921, 1951, 3503, 3533
Bse118I RCCGGY 1 cut(s) 2073
Bse3DI GCAATG 5 cut(s) 1748, 2608, 2877, 4518, 4671
Bse8I GATNNNNATC 3 cut(s) 1347, 1860, 4722
BseAI TCCGGA 1 cut(s) 820
BseBI CCWGG 9 cut(s) 931, 1562, 1591, 1896, 2064, 2178, 2262, 4058, 4329
BseCI ATCGAT 2 cut(s) 168, 3346
BseJI GATNNNNATC 3 cut(s) 1347, 1860, 4722
BseMI GCAATG 5 cut(s) 1748, 2608, 2877, 4518, 4671
BseRI GAGGAG 4 cut(s) 1094, 2105, 2906, 3726
BseSI GKGCMC 3 cut(s) 1614, 3895, 3906
BseYI CCCAGC 1 cut(s) 62
BsgI GTGCAG 1 cut(s) 1985
Bsh1236I CGCG 1 cut(s) 3307
BshFI GGCC 4 cut(s) 381, 666, 1347, 3543
BshNI GGYRCC 1 cut(s) 472
BshTI ACCGGT 1 cut(s) 2073
BshVI ATCGAT 2 cut(s) 168, 3346
BsiHKAI GWGCWC 4 cut(s) 1630, 3718, 3895, 4180
BsiHKCI CYCGRG 2 cut(s) 371, 3254
BsiSI CCGG 7 cut(s) 788, 821, 1865, 2074, 3381, 3479, 3959
BslFI GGGAC 5 cut(s) 207, 2570, 3367, 3726, 4449
BsmAI GTCTC 6 cut(s) 297, 309, 559, 1287, 2766, 4019
BsmBI CGTCTC 1 cut(s) 4019
BsmFI GGGAC 5 cut(s) 207, 2570, 3367, 3726, 4449
BsmI GAATGC 3 cut(s) 1177, 4270, 4592
BsnI GGCC 4 cut(s) 381, 666, 1347, 3543
Bso31I GGTCTC 3 cut(s) 297, 309, 559
BsoBI CYCGRG 2 cut(s) 371, 3254
Bsp1286I GDGCHC 9 cut(s) 620, 1614, 1630, 1939, 3718, 3895, 3906, 4180, 4612
Bsp13I TCCGGA 1 cut(s) 820
Bsp1407I TGTACA 1 cut(s) 4501
Bsp1720I GCTNAGC 1 cut(s) 2435
BspACI CCGC 9 cut(s) 289, 555, 1011, 1990, 2000, 2268, 3305, 3307, 4157
BspANI GGCC 4 cut(s) 381, 666, 1347, 3543
BspDI ATCGAT 2 cut(s) 168, 3346
BspEI TCCGGA 1 cut(s) 820
BspFNI CGCG 1 cut(s) 3307
BspHI TCATGA 1 cut(s) 4180
BspMAI CTGCAG 3 cut(s) 235, 1813, 3338
BspQI GCTCTTC 2 cut(s) 2990, 3136
BspT107I GGYRCC 1 cut(s) 472
BspTI CTTAAG 1 cut(s) 1775
BspTNI GGTCTC 3 cut(s) 297, 309, 559
BsrBI CCGCTC 1 cut(s) 1011
BsrDI GCAATG 5 cut(s) 1748, 2608, 2877, 4518, 4671
BsrFI RCCGGY 1 cut(s) 2073
BsrGI TGTACA 1 cut(s) 4501
BssAI RCCGGY 1 cut(s) 2073
BssT1I CCWWGG 5 cut(s) 881, 1553, 2146, 2748, 4407
Bst2UI CCWGG 9 cut(s) 931, 1562, 1591, 1896, 2064, 2178, 2262, 4058, 4329
Bst4CI ACNGT 8 cut(s) 362, 656, 674, 1852, 2130, 2912, 4115, 4706
BstAFI CTTAAG 1 cut(s) 1775
BstAPI GCANNNNNTGC 1 cut(s) 2257
BstAUI TGTACA 1 cut(s) 4501
BstBAI YACGTR 2 cut(s) 3299, 4535
BstC8I GCNNGC 7 cut(s) 2048, 2253, 2968, 3305, 4282, 4481, 4662
BstDSI CCRYGG 2 cut(s) 2644, 3305
BstENI CCTNNNNNAGG 1 cut(s) 1929
BstFNI CGCG 1 cut(s) 3307
BstHHI GCGC 1 cut(s) 4479
BstMAI GTCTC 6 cut(s) 297, 309, 559, 1287, 2766, 4019
BstNI CCWGG 9 cut(s) 931, 1562, 1591, 1896, 2064, 2178, 2262, 4058, 4329
BstNSI RCATGY 3 cut(s) 2050, 2255, 4483
BstPAI GACNNNNGTC 2 cut(s) 1977, 3282
BstSFI CTRYAG 6 cut(s) 231, 652, 1809, 2911, 3192, 3334
BstSLI GKGCMC 3 cut(s) 1614, 3895, 3906
BstSNI TACGTA 1 cut(s) 3299
BstUI CGCG 1 cut(s) 3307
BstV2I GAAGAC 2 cut(s) 1959, 3618
BstX2I RGATCY 8 cut(s) 826, 872, 899, 1678, 2780, 3095, 3636, 3916
BstXI CCANNNNNNTGG 5 cut(s) 2034, 2243, 2452, 4204, 4433
BstYI RGATCY 8 cut(s) 826, 872, 899, 1678, 2780, 3095, 3636, 3916
Bsu15I ATCGAT 2 cut(s) 168, 3346
BsuI GTATCC 3 cut(s) 546, 1690, 3658
BsuRI GGCC 4 cut(s) 381, 666, 1347, 3543
BsuTUI ATCGAT 2 cut(s) 168, 3346
BtgI CCRYGG 2 cut(s) 2644, 3305
BtgZI GCGATG 1 cut(s) 4251
BtsI GCAGTG 5 cut(s) 1973, 2463, 2889, 2983, 4152
Cac8I GCNNGC 7 cut(s) 2048, 2253, 2968, 3305, 4282, 4481, 4662
CaiI CAGNNNCTG 4 cut(s) 2434, 3611, 3755, 4553
CciI TCATGA 1 cut(s) 4180
CfoI GCGC 1 cut(s) 4479
Cfr10I RCCGGY 1 cut(s) 2073
Cfr42I CCGCGG 1 cut(s) 3308
ClaI ATCGAT 2 cut(s) 168, 3346
CseI GACGC 1 cut(s) 4526
CspAI ACCGGT 1 cut(s) 2073
CspCI CAANNNNNGTGG 2 cut(s) 2959, 2994
DraI TTTAAA 3 cut(s) 366, 1335, 2538
DriI GACNNNNNGTC 2 cut(s) 783, 3738
EaeI YGGCCR 2 cut(s) 379, 1345
Eam1105I GACNNNNNGTC 2 cut(s) 783, 3738
Ecl136II GAGCTC 1 cut(s) 3716
Eco105I TACGTA 1 cut(s) 3299
Eco130I CCWWGG 5 cut(s) 881, 1553, 2146, 2748, 4407
Eco24I GRGCYC 4 cut(s) 620, 1939, 3718, 4612
Eco31I GGTCTC 3 cut(s) 297, 309, 559
Eco32I GATATC 1 cut(s) 649
Eco53kI GAGCTC 1 cut(s) 3716
Eco57I CTGAAG 9 cut(s) 687, 1446, 1590, 1654, 1785, 2390, 2718, 3825, 4271
Eco72I CACGTG 1 cut(s) 4535
Eco88I CYCGRG 2 cut(s) 371, 3254
EcoICRI GAGCTC 1 cut(s) 3716
EcoNI CCTNNNNNAGG 1 cut(s) 1929
EcoO109I RGGNCCY 3 cut(s) 1557, 2522, 4322
EcoRII CCWGG 9 cut(s) 929, 1560, 1589, 1894, 2062, 2176, 2260, 4056, 4327
EcoRV GATATC 1 cut(s) 649
EcoT14I CCWWGG 5 cut(s) 881, 1553, 2146, 2748, 4407
EcoT22I ATGCAT 1 cut(s) 4592
EcoT38I GRGCYC 4 cut(s) 620, 1939, 3718, 4612
ErhI CCWWGG 5 cut(s) 881, 1553, 2146, 2748, 4407
Esp3I CGTCTC 1 cut(s) 4019
FalI AAGNNNNNCTT 6 cut(s) 1758, 1790, 3934, 3966, 4385, 4417
FaqI GGGAC 5 cut(s) 207, 2570, 3367, 3726, 4449
FauI CCCGC 3 cut(s) 1004, 2261, 3312
FauNDI CATATG 1 cut(s) 2853
FbaI TGATCA 1 cut(s) 2224
FblI GTMKAC 3 cut(s) 632, 2787, 4389
FriOI GRGCYC 4 cut(s) 620, 1939, 3718, 4612
FspAI RTGCGCAY 1 cut(s) 4478
FspI TGCGCA 1 cut(s) 4478
GlaI GCGC 1 cut(s) 4478
GsaI CCCAGC 1 cut(s) 66
GsuI CTGGAG 5 cut(s) 279, 303, 752, 1573, 3729
HaeIII GGCC 4 cut(s) 381, 666, 1347, 3543
HapII CCGG 7 cut(s) 788, 821, 1865, 2074, 3381, 3479, 3959
HgaI GACGC 1 cut(s) 4526
HhaI GCGC 1 cut(s) 4479
Hin6I GCGC 1 cut(s) 4477
HinP1I GCGC 1 cut(s) 4477
HincII GTYRAC 4 cut(s) 633, 1202, 1816, 2395
HindII GTYRAC 4 cut(s) 633, 1202, 1816, 2395
HindIII AAGCTT 3 cut(s) 1640, 1772, 2380
HpaI GTTAAC 2 cut(s) 1816, 2395
HpaII CCGG 7 cut(s) 788, 821, 1865, 2074, 3381, 3479, 3959
Hpy99I CGWCG 1 cut(s) 152
HpyCH4III ACNGT 8 cut(s) 362, 656, 674, 1852, 2130, 2912, 4115, 4706
HpyCH4IV ACGT 5 cut(s) 150, 3022, 3298, 4534, 4648
HpySE526I ACGT 5 cut(s) 150, 3022, 3298, 4534, 4648
HspAI GCGC 1 cut(s) 4477
Kpn2I TCCGGA 1 cut(s) 820
Ksp22I TGATCA 1 cut(s) 2224
KspAI GTTAAC 2 cut(s) 1816, 2395
KspI CCGCGG 1 cut(s) 3308
LguI GCTCTTC 2 cut(s) 2990, 3136
MaeII ACGT 5 cut(s) 150, 3022, 3298, 4534, 4648
MbiI CCGCTC 1 cut(s) 1011
MfeI CAATTG 1 cut(s) 1754
MflI RGATCY 8 cut(s) 826, 872, 899, 1678, 2780, 3095, 3636, 3916
MhlI GDGCHC 9 cut(s) 620, 1614, 1630, 1939, 3718, 3895, 3906, 4180, 4612
MlsI TGGCCA 2 cut(s) 381, 1347
MluNI TGGCCA 2 cut(s) 381, 1347
MlyI GAGTC 9 cut(s) 310, 1382, 1667, 2966, 3067, 3278, 3727, 4139, 4705
MmeI TCCRAC 1 cut(s) 403
Mox20I TGGCCA 2 cut(s) 381, 1347
Mph1103I ATGCAT 1 cut(s) 4592
MroI TCCGGA 1 cut(s) 820
MroXI GAANNNNTTC 2 cut(s) 436, 3946
MscI TGGCCA 2 cut(s) 381, 1347
MslI CAYNNNNRTG 3 cut(s) 2882, 4185, 4275
Msp20I TGGCCA 2 cut(s) 381, 1347
MspA1I CMGCKG 5 cut(s) 289, 2268, 2434, 3307, 4550
MspCI CTTAAG 1 cut(s) 1775
MspI CCGG 7 cut(s) 788, 821, 1865, 2074, 3381, 3479, 3959
MunI CAATTG 1 cut(s) 1754
Mva1269I GAATGC 3 cut(s) 1177, 4270, 4592
MvaI CCWGG 9 cut(s) 931, 1562, 1591, 1896, 2064, 2178, 2262, 4058, 4329
MvnI CGCG 1 cut(s) 3307
NciI CCSGG 3 cut(s) 3382, 3480, 3959
NdeI CATATG 1 cut(s) 2853
NmuCI GTSAC 6 cut(s) 810, 1970, 2216, 2447, 3270, 3687
NsbI TGCGCA 1 cut(s) 4478
NsiI ATGCAT 1 cut(s) 4592
NspI RCATGY 3 cut(s) 2050, 2255, 4483
PaeI GCATGC 3 cut(s) 2050, 2255, 4483
PaeR7I CTCGAG 1 cut(s) 371
PagI TCATGA 1 cut(s) 4180
PciSI GCTCTTC 2 cut(s) 2990, 3136
PcsI WCGNNNNNNNCGW 3 cut(s) 147, 165, 3742
PctI GAATGC 3 cut(s) 1177, 4270, 4592
PdmI GAANNNNTTC 2 cut(s) 436, 3946
PflMI CCANNNNNTGG 4 cut(s) 887, 3707, 3755, 4706
PinAI ACCGGT 1 cut(s) 2073
PleI GAGTC 9 cut(s) 310, 1382, 1666, 2965, 3066, 3277, 3727, 4138, 4704
PmaCI CACGTG 1 cut(s) 4535
PmlI CACGTG 1 cut(s) 4535
PpsI GAGTC 9 cut(s) 310, 1382, 1666, 2965, 3066, 3277, 3727, 4138, 4704
Ppu21I YACGTR 2 cut(s) 3299, 4535
PpuMI RGGWCCY 3 cut(s) 1557, 2522, 4322
PshAI GACNNNNGTC 2 cut(s) 1977, 3282
PshBI ATTAAT 1 cut(s) 1946
Psp124BI GAGCTC 1 cut(s) 3718
Psp5II RGGWCCY 3 cut(s) 1557, 2522, 4322
Psp6I CCWGG 9 cut(s) 929, 1560, 1589, 1894, 2062, 2176, 2260, 4056, 4327
PspCI CACGTG 1 cut(s) 4535
PspFI CCCAGC 1 cut(s) 62
PspGI CCWGG 9 cut(s) 929, 1560, 1589, 1894, 2062, 2176, 2260, 4056, 4327
PspPPI RGGWCCY 3 cut(s) 1557, 2522, 4322
PspXI VCTCGAGB 1 cut(s) 371
PsrI GAACNNNNNNTAC 2 cut(s) 3856, 3888
PstI CTGCAG 3 cut(s) 235, 1813, 3338
PstNI CAGNNNCTG 4 cut(s) 2434, 3611, 3755, 4553
PsuI RGATCY 8 cut(s) 826, 872, 899, 1678, 2780, 3095, 3636, 3916
PvuII CAGCTG 2 cut(s) 2434, 4550
RseI CAYNNNNRTG 3 cut(s) 2882, 4185, 4275
SacI GAGCTC 1 cut(s) 3718
SacII CCGCGG 1 cut(s) 3308
SalI GTCGAC 1 cut(s) 631
SapI GCTCTTC 2 cut(s) 2990, 3136
ScaI AGTACT 2 cut(s) 1423, 3252
SchI GAGTC 9 cut(s) 310, 1382, 1667, 2966, 3067, 3278, 3727, 4139, 4705
SduI GDGCHC 9 cut(s) 620, 1614, 1630, 1939, 3718, 3895, 3906, 4180, 4612
SfcI CTRYAG 6 cut(s) 231, 652, 1809, 2911, 3192, 3334
Sfr274I CTCGAG 1 cut(s) 371
Sfr303I CCGCGG 1 cut(s) 3308
SgrBI CCGCGG 1 cut(s) 3308
SlaI CTCGAG 1 cut(s) 371
SmiMI CAYNNNNRTG 3 cut(s) 2882, 4185, 4275
SmlI CTYRAG 6 cut(s) 371, 596, 732, 1775, 2674, 4016
SmoI CTYRAG 6 cut(s) 371, 596, 732, 1775, 2674, 4016
SnaBI TACGTA 1 cut(s) 3299
SpeI ACTAGT 2 cut(s) 758, 3875
SphI GCATGC 3 cut(s) 2050, 2255, 4483
SsiI CCGC 9 cut(s) 289, 555, 1011, 1990, 2000, 2268, 3305, 3307, 4157
SstI GAGCTC 1 cut(s) 3718
StyI CCWWGG 5 cut(s) 881, 1553, 2146, 2748, 4407
TaaI ACNGT 8 cut(s) 362, 656, 674, 1852, 2130, 2912, 4115, 4706
TaiI ACGT 5 cut(s) 153, 3025, 3301, 4537, 4651
TaqI TCGA 9 cut(s) 141, 168, 372, 632, 2713, 3346, 3658, 4291, 4456
TatI WGTACW 5 cut(s) 1421, 2478, 3250, 3832, 4501
TauI GCSGC 2 cut(s) 1993, 4160
TseFI GTSAC 6 cut(s) 810, 1970, 2216, 2447, 3270, 3687
Tsp45I GTSAC 6 cut(s) 810, 1970, 2216, 2447, 3270, 3687
TspGWI ACGGA 6 cut(s) 1917, 2482, 2661, 2773, 3070, 4676
Van91I CCANNNNNTGG 4 cut(s) 887, 3707, 3755, 4706
Vha464I CTTAAG 1 cut(s) 1775
VneI GTGCAC 1 cut(s) 3891
VspI ATTAAT 1 cut(s) 1946
XagI CCTNNNNNAGG 1 cut(s) 1929
XapI RAATTY 8 cut(s) 177, 1548, 2239, 2847, 3372, 4070, 4140, 4487
XbaI TCTAGA 2 cut(s) 2576, 2804
XceI RCATGY 3 cut(s) 2050, 2255, 4483
XcmI CCANNNNNNNNNTGG 2 cut(s) 2651, 3524
XhoI CTCGAG 1 cut(s) 371
XmiI GTMKAC 3 cut(s) 632, 2787, 4389
XmnI GAANNNNTTC 2 cut(s) 436, 3946
ZrmI AGTACT 2 cut(s) 1423, 3252
Zsp2I ATGCAT 1 cut(s) 4592
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.