Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0012478

Physical Location & Seq

Genomic Coordinates Reverse (-)

4809102 .. 4815991

Gene Structure 6890 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00162200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3819 bp

ATGGAGAAGGATATTTCGACGGATGATTATCTTATTAAGAGGAGTGATCCTATTATTGCTTCCAAGGCTGTGGGGTCTTTTGTAAAGATTGATTCTATATCCATAGATCTTGATGATGCAAATGATGACAACAGACATGCGGGGAAGTGTGAGCATTTCTCCATACGTTCGAAAAAGAACTGGAAGATATGTTGGCCATTTGCTGTAGACGGCGATTTGGACAAGTCGGATCAGGAGAAAACAGCTATGCTTCCTCCTTTGGATGCTCCAAAATTCAGATCGTGGTGTTGCCAGAATTGTCTGCGTGAAATTGGTTCTAAAGGTCATGGTGCAGACCTTAATTGTCATGTTGGATCTAATTCCAAGTGCACTGGTGCTCAGATGCCGCCCGCCACTGATACTGCATTGCTTCAGTCAGATTATCAACAAGGTCTGAAGTCAAAAACCGTTGAGGAAAAACAATTTCATGCTTATACTTATACTATTGTGGATGGCAGTGAGACACATCCTTCCTCACGTATCGATAAGAAAAAAAGGAATGGTGAAGTTTCACCCACAACCATCATAGCGAATGAGAATGCCCTAGCAAATTGGGTGAGTCATGAAATGCCCAGATTCAATTCTGCGGAGACAGAAGTTAACACTAGTAGGATGCAGGAGAGACCTAATCATGTCACAGAAAAATTGGGTTGCAATGGATCTGTCAGAGTCTATAAGCCAGGATGTGAAAGTCATGAAGATGCCAGCCTTGAGCTTGAGATTACAAAAAACAATTGCTGGATAAGGAATTCCACTCAGAATGGTGAAACTGAGTACCATTCATTTGCAGCCAACAAACAGGAGTCAATAAATGCTTCTGGACTATGTAATGGCAGGATGGTTGGTGAGGCAGGCAATCCTATCAAGGTTCAGACCAATGTTTGTCATCCTCTGATTTTAGATGAGTGTGATTATGCATCATCTGAAAATCATGAAAAGTCCAGTGGTTTTCATCGTAAGAAAAGTCGAAAGGTGCGTTTGTTGACTGAGTTGTTGTGTAATAAAGAGGATGCAAAGATCGATTACACCAGGACAGAAGAGTCTCCTTCCAATATGATCAATAATACATCTGAGATAGGATCTGTTTCCCAAGGTCAGGTGTCTCTCCAAGAAAATGTTAGAGTGGGTTCAGGTGAGAATAAAAAAAGGAAATTGTCGGAGGAAGAAGAGAAGGGAGGCCAAGAGATGAGCCATCCAAAAATTTTGAGTAAAAAAGTTAAGACTTTTAGGCGAGATGGAGAAGCCGCCAATGCAATTGCAACTACTGGAATGGAAGAAGATGCATTGGCCAGAATTTCTTTGCAGGTTGATATGAAGAATAATTGGAGTAGATATGGAAATGAAAGGATCCATACTGTTGGTAAGAAGAAAGCTAAGAAATCTCATGACTTTGATGCATGGTCGTCCTTATCCCCAACTGCAGAAAATGTGCCAATAGAAGCCCAGGACAAATTTGGAAATTCAAGCAAGAATGCTACTAATGGTGCTTCTTTTAGACCAATGTATGATCCATCAGTTAGAGAGAGTGATTTGCACTCTTCAAAGAAAGATAGAAAATCTGGTTTTGTTAAGAGGAAAGGCAAGATGCCACAATCTGATACTGGGCCGGTTTTTCTATCAAATACAAGGAAAGATGCAGAAATCAAGGCAAATGGGCAAGGAACTGTTAGATTTCATCCGGCAGAAGATGCATCTACTGAGAAAGGGCTGGATCTTTCTCTCAACAGCTATTTGGCTACCCAAAGATATGATGGAAAATGTCTTCCTCAACAAGATGATGGATTTCCTTCCTTGTCGACTTGGAAAGATAGCACTTGCAAGCTAGATGAGTTCATGAGGAAAAATGTGGAAGTCAATTATTTGGCGAATTTAAACAAACCTTCTACATCTACGGCAAATCCATTATCTGAGGATGGAGTACCTGGTGAACCAAGTAAAAAAGTTTACTCCTACAGCATGCCTATTCTGAATGAGAGGCAAAATTACAGCTCCCAGGTTGAACAAGGGAGCTGTTCTTTAATGCAGCAAATGGATATATCTCGCGGAAGCAAGAATCAGAAAATCATTGAGGTTGAGAAAAATTCAGGTGTGCCTGTTATTAGGAAGCATAGCAACCATCAAGCTGAGATGTCTGAAAAGGGTACTATAGATGACATACCAATGGAAATTGTTGAACTCATGGCGAAAAATCAGTATGAGAGATGTCTTCATGAGACTCAAAATGATAAGCATGTATTAGAAACCCCAAGCAGAGCAAGGAATGCTCAGATGATGGAGCATACTCAAGTATATGGCATTGGGGACTTGAGAGTATTAGAGGAAACCAGTCAGAAACGAAAAGCTCAGGCAAGAAATGCAAAAAATGGCACAACAAAGAAAAATGTGGCACCTTTCCAACAGAAGTCCGTTGATTATTTTCCTTATATCAATGGAAACCATTTTGGCATGAACCGTCTTGATCAAATGCATTGCACCGCAGGGTTTGGTCCATTCAGTCAGTCTCAAAAGAAGCCTTCACCACGAGGGCAATTTCCTGCTGCTGGCAACAGCAAATGTAGTTGTGCTCAAAGTTGCAAATGGGATGGAAATATGATGGGGCACAGGTTCTCGAATTCAAACTTGCAGAGCTTTGCAGCATGCAACACATGCCAGTCTGTTCCGCAATCAAAGGAAGAAGCAGCTCATCTTTGGTCACCTGTAATATCAGCTCACATGCCCTTTGCTTATAAGAATCCTCAGAAGGGTCCAGCCCAGTCATCTAATGTCAAAATGGTTTCACAGTCTCCTGGCCCACTGCAGAAGGGAAATGCCACTGGGGATTGTGACCTGAGTTTGAATCTGAATGCTCCCAACTTTGAGAAGCGTAATGAAGCTGTTGGTTCTGAAACTATCAGCAGAACAAATCCAGAGTACTCGTTCACTTGCAAACATAACGGGACTGAGCCTCATCAAAATTCATTGGGGTCATTAGATTTATATTCTAATGAAACCATACCAGCAATGCATTTGCTCAGCCTCATGGATGCAGGGATGCGGTCAGGTGCATCCTTAAATATGGGTGGAAACCCGAAATTTCCCAAGAGACCCTTTCCTAATGATCTCAACTCTAAGGGATATCCTGGGCTGGATATTGGTCTTTATAAGGCTACTGATACTGTGAATCATCCATCATCAAACTGTTATGGGAAAAATCACCTTTCTGAGAAATCTCTCGATTTGTTTCCTACCAATCCAACTTTTGGGGCATCTACATCTTCATTTGAACACTCAAAAAGTTTTGGAAGGGCTACAGACTTTATGGATCAAGTTTCGAGCTCTCAAAAGAAAGAAAAGATCCAAAGATCCCATTCACCTGCACAGAATAGAGGTCCTAGATCACAAAAATCTTTAGCTGCTGATGGTGGTTTTGGCAACAATCGTACAACTATCCCTGTTCATAGTATACCGAAAGGGTTCCTTCCTGTTTCTGGTCCTTTGATGTTTCCGCTGCACTACCACACCATTGCAAATTCAAGGAAACACAACTTGGAAACTCCTAATGGTAATGGAACCATGAAGCCTCCAAAGACTAGTTTGGAGTCTTCAATCTGCTGTATGAACAGAAATCCAGCTGATTTCAGCATGCCAGATGTAGGAAATGGGTACATGATTAGAGGTGAAGACCTAAAAGTTGGGAAGAAGATTTCTTCTGAAAAGAGGCACGGCTTATTTAAAGTAGAGCAGCAGAAGCGGCAGAGGAATACAAAACACACTATTGAAAAGGATCGCGCGCGACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009628 GO:0009651 GO:0009791 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009910 GO:0009987 GO:0010022 GO:0010073 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0018022 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0036211 GO:0042538 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048367 GO:0048507 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070734 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1901564 GO:1902679 GO:1903506 GO:1903507 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

1272

Amino Acids

141.16

Weight (kDa)

8.82

Isoelectric Point (pI)

45.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012478)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11530 AT5G11530 AT5G11530
fragaria_vesca	FvH4_2g35880 FvH4_2g35880
malus_domestica	MD08G1116300.v1.1 MD15G1096000.v1.1
prunus_persica	Prupe.1G450900_v2.0.a1
pyrus_communis	pycom08g09700
rosa_chinensis	RchiOBHm_Chr6g0305941
rosa_laevigata	RLG00000010844
rosa_multiflora	Rmu_sc0001809.1_g000052
rosa_roxburghii	Rroxscaffold_7G00162200
rosa_rugosa	Rorug06G0345500
rosa_samantha	Rh6AG457200 Rh6BG443900 Rh6CG471200 Rh6DG457700
rosa_wichuraiana	Rw6G039890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	2766, 3180
AarI	CACCTGC	1 cut(s)	3400
AasI	GACNNNNNNGTC	1 cut(s)	1078
Acc36I	ACCTGC	2 cut(s)	1333, 3400
AccB1I	GGYRCC	1 cut(s)	2425
AccB7I	CCANNNNNTGG	1 cut(s)	3278
AccI	GTMKAC	3 cut(s)	207, 1835, 3481
AccII	CGCG	4 cut(s)	2082, 3807, 3809, 3811
AcoI	YGGCCR	2 cut(s)	194, 1326
AcuI	CTGAAG	2 cut(s)	395, 455
AfaI	GTAC	6 cut(s)	815, 1959, 2182, 2951, 3460, 3683
AfiI	CCNNNNNNNGG	6 cut(s)	1135, 2579, 2780, 3278, 3506, 3671
AhlI	ACTAGT	2 cut(s)	644, 3608
AjnI	CCWGG	7 cut(s)	718, 1067, 1482, 1960, 2031, 2824, 3157
AjuI	GAANNNNNNNTTGG	2 cut(s)	3548, 3580
Alw21I	GWGCWC	4 cut(s)	371, 379, 2605, 3356
Alw26I	GTCTC	9 cut(s)	494, 623, 655, 1086, 1146, 2246, 2544, 2826, 3115
Alw44I	GTGCAC	1 cut(s)	367
AoxI	GGCC	5 cut(s)	194, 1216, 1326, 1643, 2827
ApaLI	GTGCAC	1 cut(s)	367
ApeKI	GCWGC	8 cut(s)	827, 2062, 2576, 2672, 2717, 3431, 3526, 3760
Asp700I	GAANNNNTTC	1 cut(s)	3491
AspLEI	GCGC	2 cut(s)	3809, 3811
AspS9I	GGNCC	6 cut(s)	1643, 2525, 2783, 2828, 3407, 3509
AsuII	TTCGAA	1 cut(s)	170
AvaII	GGWCC	4 cut(s)	2525, 2783, 3407, 3509
BaeGI	GKGCMC	2 cut(s)	371, 2640
BalI	TGGCCA	2 cut(s)	196, 1328
BamHI	GGATCC	1 cut(s)	1386
BanI	GGYRCC	1 cut(s)	2425
BanII	GRGCYC	1 cut(s)	3356
BauI	CACGAG	1 cut(s)	2559
BbsI	GAAGAC	4 cut(s)	1793, 2237, 3612, 3705
Bbv12I	GWGCWC	4 cut(s)	371, 379, 2605, 3356
BbvI	GCAGC	8 cut(s)	839, 2074, 2563, 2684, 2729, 3418, 3513, 3772
BceAI	ACGGC	3 cut(s)	226, 1947, 3757
BciT130I	CCWGG	7 cut(s)	720, 1069, 1484, 1962, 2033, 2826, 3159
BclI	TGATCA	2 cut(s)	1095, 2497
BcoDI	GTCTC	9 cut(s)	494, 623, 655, 1086, 1146, 2246, 2544, 2826, 3115
BcuI	ACTAGT	2 cut(s)	644, 3608
BfaI	CTAG	5 cut(s)	584, 645, 1862, 3411, 3609
BfmI	CTRYAG	6 cut(s)	204, 1458, 1990, 2184, 2834, 3327
BfuAI	ACCTGC	2 cut(s)	1333, 3400
BglII	AGATCT	1 cut(s)	106
BlpI	GCTNAGC	1 cut(s)	3050
BmcAI	AGTACT	1 cut(s)	2951
Bme1390I	CCNGG	7 cut(s)	720, 1069, 1484, 1962, 2033, 2826, 3159
Bme18I	GGWCC	4 cut(s)	2525, 2783, 3407, 3509
BmgT120I	GGNCC	6 cut(s)	1643, 2525, 2783, 2828, 3407, 3509
BmiI	GGNNCC	5 cut(s)	1388, 2427, 2784, 3494, 3589
BmrFI	CCNGG	7 cut(s)	720, 1069, 1484, 1962, 2033, 2826, 3159
BmrI	ACTGGG	3 cut(s)	1650, 2785, 2862
BmuI	ACTGGG	3 cut(s)	1650, 2785, 2862
BpiI	GAAGAC	4 cut(s)	1793, 2237, 3612, 3705
BplI	GAGNNNNNCTC	2 cut(s)	143, 175
Bpu10I	CCTNAGC	1 cut(s)	2382
Bpu1102I	GCTNAGC	1 cut(s)	3050
Bpu14I	TTCGAA	1 cut(s)	170
BpuEI	CTTGAG	4 cut(s)	770, 776, 2307, 2365
Bsa29I	ATCGAT	2 cut(s)	522, 1059
BsaAI	YACGTR	1 cut(s)	518
BsaBI	GATNNNNATC	1 cut(s)	27
BsaI	GGTCTC	2 cut(s)	655, 3115
BsaJI	CCNNGG	5 cut(s)	63, 1129, 1482, 2031, 3158
Bsc4I	CCNNNNNNNGG	6 cut(s)	1135, 2579, 2780, 3278, 3506, 3671
Bse118I	RCCGGY	1 cut(s)	1645
Bse1I	ACTGG	9 cut(s)	185, 376, 981, 1309, 1645, 2364, 2689, 2791, 2857
Bse3DI	GCAATG	5 cut(s)	404, 700, 2506, 3045, 3540
Bse8I	GATNNNNATC	1 cut(s)	27
BseBI	CCWGG	7 cut(s)	720, 1069, 1484, 1962, 2033, 2826, 3159
BseCI	ATCGAT	2 cut(s)	522, 1059
BseDI	CCNNGG	5 cut(s)	63, 1129, 1482, 2031, 3158
BseJI	GATNNNNATC	1 cut(s)	27
BseLI	CCNNNNNNNGG	6 cut(s)	1135, 2579, 2780, 3278, 3506, 3671
BseMI	GCAATG	5 cut(s)	404, 700, 2506, 3045, 3540
BseNI	ACTGG	9 cut(s)	185, 376, 981, 1309, 1645, 2364, 2689, 2791, 2857
BsePI	GCGCGC	1 cut(s)	3807
BseRI	GAGGAG	1 cut(s)	55
BseSI	GKGCMC	2 cut(s)	371, 2640
BseXI	GCAGC	8 cut(s)	839, 2074, 2563, 2684, 2729, 3418, 3513, 3772
BsgI	GTGCAG	3 cut(s)	351, 3378, 3512
Bsh1236I	CGCG	4 cut(s)	2082, 3807, 3809, 3811
BshFI	GGCC	5 cut(s)	196, 1218, 1328, 1645, 2829
BshNI	GGYRCC	1 cut(s)	2425
BshVI	ATCGAT	2 cut(s)	522, 1059
BsiHKAI	GWGCWC	4 cut(s)	371, 379, 2605, 3356
BsiSI	CCGG	2 cut(s)	1646, 1718
BslFI	GGGAC	2 cut(s)	2354, 2989
BslI	CCNNNNNNNGG	6 cut(s)	1135, 2579, 2780, 3278, 3506, 3671
BsmAI	GTCTC	9 cut(s)	494, 623, 655, 1086, 1146, 2246, 2544, 2826, 3115
BsmFI	GGGAC	2 cut(s)	2354, 2989
BsmI	GAATGC	4 cut(s)	583, 1516, 2305, 2887
BsnI	GGCC	5 cut(s)	196, 1218, 1328, 1645, 2829
Bso31I	GGTCTC	2 cut(s)	655, 3115
Bsp119I	TTCGAA	1 cut(s)	170
Bsp1286I	GDGCHC	5 cut(s)	371, 379, 2605, 2640, 3356
Bsp1720I	GCTNAGC	1 cut(s)	3050
BspANI	GGCC	5 cut(s)	196, 1218, 1328, 1645, 2829
BspDI	ATCGAT	2 cut(s)	522, 1059
BspFNI	CGCG	4 cut(s)	2082, 3807, 3809, 3811
BspHI	TCATGA	6 cut(s)	601, 733, 970, 1423, 1872, 2248
BspLI	GGNNCC	5 cut(s)	1388, 2427, 2784, 3494, 3589
BspMAI	CTGCAG	2 cut(s)	1462, 2838
BspMI	ACCTGC	2 cut(s)	1333, 3400
BspT104I	TTCGAA	1 cut(s)	170
BspT107I	GGYRCC	1 cut(s)	2425
BspTNI	GGTCTC	2 cut(s)	655, 3115
BsrDI	GCAATG	5 cut(s)	404, 700, 2506, 3045, 3540
BsrFI	RCCGGY	1 cut(s)	1645
BsrI	ACTGG	9 cut(s)	185, 376, 981, 1309, 1645, 2364, 2689, 2791, 2857
BssAI	RCCGGY	1 cut(s)	1645
BssECI	CCNNGG	5 cut(s)	63, 1129, 1482, 2031, 3158
BssHII	GCGCGC	1 cut(s)	3807
BssNAI	GTATAC	1 cut(s)	3482
BssSI	CACGAG	1 cut(s)	2559
BssT1I	CCWWGG	2 cut(s)	63, 1129
Bst1107I	GTATAC	1 cut(s)	3482
Bst2BI	CACGAG	1 cut(s)	2559
Bst2UI	CCWGG	7 cut(s)	720, 1069, 1484, 1962, 2033, 2826, 3159
Bst4CI	ACNGT	7 cut(s)	448, 1396, 1705, 2492, 2820, 3196, 3218
Bst6I	CTCTTC	3 cut(s)	1071, 1200, 1582
BstAPI	GCANNNNNTGC	4 cut(s)	1727, 2300, 2393, 2685
BstBAI	YACGTR	1 cut(s)	518
BstBI	TTCGAA	1 cut(s)	170
BstC8I	GCNNGC	9 cut(s)	390, 745, 892, 1859, 1997, 2581, 2677, 3662, 3809
BstEII	GGTNACC	1 cut(s)	2730
BstFNI	CGCG	4 cut(s)	2082, 3807, 3809, 3811
BstHHI	GCGC	2 cut(s)	3809, 3811
BstMAI	GTCTC	9 cut(s)	494, 623, 655, 1086, 1146, 2246, 2544, 2826, 3115
BstMWI	GCNNNNNNNGC	8 cut(s)	65, 1289, 1727, 2300, 2393, 2685, 3766, 3769
BstNI	CCWGG	7 cut(s)	720, 1069, 1484, 1962, 2033, 2826, 3159
BstNSI	RCATGY	7 cut(s)	140, 1999, 2273, 2679, 2688, 2755, 3664
BstPI	GGTNACC	1 cut(s)	2730
BstSCI	CCNGG	7 cut(s)	718, 1067, 1482, 1960, 2031, 2824, 3157
BstSFI	CTRYAG	6 cut(s)	204, 1458, 1990, 2184, 2834, 3327
BstSLI	GKGCMC	2 cut(s)	371, 2640
BstUI	CGCG	4 cut(s)	2082, 3807, 3809, 3811
BstV1I	GCAGC	8 cut(s)	839, 2074, 2563, 2684, 2729, 3418, 3513, 3772
BstV2I	GAAGAC	4 cut(s)	1793, 2237, 3612, 3705
BstX2I	RGATCY	8 cut(s)	106, 353, 698, 1118, 1386, 1750, 3372, 3380
BstXI	CCANNNNNNTGG	2 cut(s)	70, 1397
BstYI	RGATCY	8 cut(s)	106, 353, 698, 1118, 1386, 1750, 3372, 3380
BstZ17I	GTATAC	1 cut(s)	3482
Bsu15I	ATCGAT	2 cut(s)	522, 1059
BsuRI	GGCC	5 cut(s)	196, 1218, 1328, 1645, 2829
BsuTUI	ATCGAT	2 cut(s)	522, 1059
BtsI	GCAGTG	2 cut(s)	502, 2831
BtsIMutI	CAGTG	6 cut(s)	369, 393, 502, 988, 2831, 2850
BveI	ACCTGC	2 cut(s)	1333, 3400
Cac8I	GCNNGC	9 cut(s)	390, 745, 892, 1859, 1997, 2581, 2677, 3662, 3809
CciI	TCATGA	6 cut(s)	601, 733, 970, 1423, 1872, 2248
CfoI	GCGC	2 cut(s)	3809, 3811
Cfr10I	RCCGGY	1 cut(s)	1645
Cfr13I	GGNCC	6 cut(s)	1643, 2525, 2783, 2828, 3407, 3509
ClaI	ATCGAT	2 cut(s)	522, 1059
CsiI	ACCWGGT	1 cut(s)	1960
Csp6I	GTAC	6 cut(s)	814, 1958, 2181, 2950, 3459, 3682
CviQI	GTAC	6 cut(s)	814, 1958, 2181, 2950, 3459, 3682
DraI	TTTAAA	2 cut(s)	1911, 3751
DrdI	GACNNNNNNGTC	1 cut(s)	1078
DseDI	GACNNNNNNGTC	1 cut(s)	1078
EaeI	YGGCCR	2 cut(s)	194, 1326
Eam1104I	CTCTTC	3 cut(s)	1071, 1200, 1582
EarI	CTCTTC	3 cut(s)	1071, 1200, 1582
Ecl136II	GAGCTC	1 cut(s)	3354
Eco130I	CCWWGG	2 cut(s)	63, 1129
Eco24I	GRGCYC	1 cut(s)	3356
Eco31I	GGTCTC	2 cut(s)	655, 3115
Eco32I	GATATC	1 cut(s)	3155
Eco47I	GGWCC	4 cut(s)	2525, 2783, 3407, 3509
Eco53kI	GAGCTC	1 cut(s)	3354
Eco57I	CTGAAG	2 cut(s)	395, 455
Eco91I	GGTNACC	1 cut(s)	2730
EcoICRI	GAGCTC	1 cut(s)	3354
EcoO109I	RGGNCCY	1 cut(s)	3407
EcoO65I	GGTNACC	1 cut(s)	2730
EcoRI	GAATTC	2 cut(s)	787, 2650
EcoRII	CCWGG	7 cut(s)	718, 1067, 1482, 1960, 2031, 2824, 3157
EcoRV	GATATC	1 cut(s)	3155
EcoT14I	CCWWGG	2 cut(s)	63, 1129
EcoT22I	ATGCAT	6 cut(s)	958, 1324, 1438, 1732, 2508, 3045
EcoT38I	GRGCYC	1 cut(s)	3356
ErhI	CCWWGG	2 cut(s)	63, 1129
FalI	AAGNNNNNCTT	4 cut(s)	3110, 3142, 3480, 3512
FaqI	GGGAC	2 cut(s)	2354, 2989
FauI	CCCGC	2 cut(s)	133, 397
FbaI	TGATCA	2 cut(s)	1095, 2497
FblI	GTMKAC	3 cut(s)	207, 1835, 3481
FriOI	GRGCYC	1 cut(s)	3356
FspBI	CTAG	5 cut(s)	584, 645, 1862, 3411, 3609
GlaI	GCGC	2 cut(s)	3808, 3810
HaeIII	GGCC	5 cut(s)	196, 1218, 1328, 1645, 2829
HapII	CCGG	2 cut(s)	1646, 1718
HhaI	GCGC	2 cut(s)	3809, 3811
Hin6I	GCGC	2 cut(s)	3807, 3809
HinP1I	GCGC	2 cut(s)	3807, 3809
HincII	GTYRAC	3 cut(s)	640, 1023, 1836
HindII	GTYRAC	3 cut(s)	640, 1023, 1836
HpaI	GTTAAC	1 cut(s)	640
HpaII	CCGG	2 cut(s)	1646, 1718
Hpy166II	GTNNAC	9 cut(s)	208, 369, 640, 1023, 1836, 1967, 1984, 2958, 3482
Hpy8I	GTNNAC	9 cut(s)	208, 369, 640, 1023, 1836, 1967, 1984, 2958, 3482
Hpy99I	CGWCG	1 cut(s)	22
HpyCH4III	ACNGT	7 cut(s)	448, 1396, 1705, 2492, 2820, 3196, 3218
HpyCH4IV	ACGT	2 cut(s)	166, 517
HpyF10VI	GCNNNNNNNGC	8 cut(s)	65, 1289, 1727, 2300, 2393, 2685, 3766, 3769
HpySE526I	ACGT	2 cut(s)	166, 517
HspAI	GCGC	2 cut(s)	3807, 3809
Ksp22I	TGATCA	2 cut(s)	1095, 2497
KspAI	GTTAAC	1 cut(s)	640
LmnI	GCTCC	5 cut(s)	271, 2033, 2046, 2314, 2890
Lsp1109I	GCAGC	8 cut(s)	839, 2074, 2563, 2684, 2729, 3418, 3513, 3772
MabI	ACCWGGT	1 cut(s)	1960
MaeI	CTAG	5 cut(s)	584, 645, 1862, 3411, 3609
MaeII	ACGT	2 cut(s)	166, 517
MaeIII	GTNAC	3 cut(s)	673, 2730, 2861
MauBI	CGCGCGCG	1 cut(s)	3807
MfeI	CAATTG	2 cut(s)	772, 1293
MflI	RGATCY	8 cut(s)	106, 353, 698, 1118, 1386, 1750, 3372, 3380
MhlI	GDGCHC	5 cut(s)	371, 379, 2605, 2640, 3356
MlsI	TGGCCA	2 cut(s)	196, 1328
MluNI	TGGCCA	2 cut(s)	196, 1328
MlyI	GAGTC	6 cut(s)	607, 717, 851, 1088, 2248, 3626
MmeI	TCCRAC	5 cut(s)	207, 331, 1176, 2458, 3296
Mox20I	TGGCCA	2 cut(s)	196, 1328
Mph1103I	ATGCAT	6 cut(s)	958, 1324, 1438, 1732, 2508, 3045
MroXI	GAANNNNTTC	1 cut(s)	3491
MscI	TGGCCA	2 cut(s)	196, 1328
MseI	TTAA	9 cut(s)	36, 339, 639, 1257, 1608, 1910, 2057, 3089, 3750
MslI	CAYNNNNRTG	2 cut(s)	738, 2198
Msp20I	TGGCCA	2 cut(s)	196, 1328
MspA1I	CMGCKG	2 cut(s)	3526, 3650
MspI	CCGG	2 cut(s)	1646, 1718
MspR9I	CCNGG	7 cut(s)	720, 1069, 1484, 1962, 2033, 2826, 3159
MunI	CAATTG	2 cut(s)	772, 1293
Mva1269I	GAATGC	4 cut(s)	583, 1516, 2305, 2887
MvaI	CCWGG	7 cut(s)	720, 1069, 1484, 1962, 2033, 2826, 3159
MvnI	CGCG	4 cut(s)	2082, 3807, 3809, 3811
MwoI	GCNNNNNNNGC	8 cut(s)	65, 1289, 1727, 2300, 2393, 2685, 3766, 3769
NlaIV	GGNNCC	5 cut(s)	1388, 2427, 2784, 3494, 3589
NmuCI	GTSAC	3 cut(s)	673, 2730, 2861
NsiI	ATGCAT	6 cut(s)	958, 1324, 1438, 1732, 2508, 3045
NspI	RCATGY	7 cut(s)	140, 1999, 2273, 2679, 2688, 2755, 3664
NspV	TTCGAA	1 cut(s)	170
PaeI	GCATGC	3 cut(s)	1999, 2679, 3664
PagI	TCATGA	6 cut(s)	601, 733, 970, 1423, 1872, 2248
PaqCI	CACCTGC	1 cut(s)	3400
PauI	GCGCGC	1 cut(s)	3807
PcsI	WCGNNNNNNNCGW	1 cut(s)	1012
PctI	GAATGC	4 cut(s)	583, 1516, 2305, 2887
PdmI	GAANNNNTTC	1 cut(s)	3491
PfeI	GAWTC	6 cut(s)	92, 615, 2092, 2770, 2875, 3199
PflMI	CCANNNNNTGG	1 cut(s)	3278
PleI	GAGTC	6 cut(s)	606, 716, 850, 1087, 2248, 3625
PpsI	GAGTC	6 cut(s)	606, 716, 850, 1087, 2248, 3625
Ppu21I	YACGTR	1 cut(s)	518
PpuMI	RGGWCCY	1 cut(s)	3407
PsiI	TTATAA	2 cut(s)	2766, 3180
Psp124BI	GAGCTC	1 cut(s)	3356
Psp5II	RGGWCCY	1 cut(s)	3407
Psp6I	CCWGG	7 cut(s)	718, 1067, 1482, 1960, 2031, 2824, 3157
PspEI	GGTNACC	1 cut(s)	2730
PspGI	CCWGG	7 cut(s)	718, 1067, 1482, 1960, 2031, 2824, 3157
PspN4I	GGNNCC	5 cut(s)	1388, 2427, 2784, 3494, 3589
PspPI	GGNCC	6 cut(s)	1643, 2525, 2783, 2828, 3407, 3509
PspPPI	RGGWCCY	1 cut(s)	3407
PstI	CTGCAG	2 cut(s)	1462, 2838
PsuI	RGATCY	8 cut(s)	106, 353, 698, 1118, 1386, 1750, 3372, 3380
PteI	GCGCGC	1 cut(s)	3807
PvuII	CAGCTG	1 cut(s)	3650
RsaI	GTAC	6 cut(s)	815, 1959, 2182, 2951, 3460, 3683
RsaNI	GTAC	6 cut(s)	814, 1958, 2181, 2950, 3459, 3682
RseI	CAYNNNNRTG	2 cut(s)	738, 2198
SacI	GAGCTC	1 cut(s)	3356
SalI	GTCGAC	1 cut(s)	1834
SaqAI	TTAA	9 cut(s)	36, 339, 639, 1257, 1608, 1910, 2057, 3089, 3750
Sau96I	GGNCC	6 cut(s)	1643, 2525, 2783, 2828, 3407, 3509
ScaI	AGTACT	1 cut(s)	2951
SchI	GAGTC	6 cut(s)	607, 717, 851, 1088, 2248, 3626
ScrFI	CCNGG	7 cut(s)	720, 1069, 1484, 1962, 2033, 2826, 3159
SduI	GDGCHC	5 cut(s)	371, 379, 2605, 2640, 3356
SexAI	ACCWGGT	1 cut(s)	1960
SfcI	CTRYAG	6 cut(s)	204, 1458, 1990, 2184, 2834, 3327
SfuI	TTCGAA	1 cut(s)	170
SinI	GGWCC	4 cut(s)	2525, 2783, 3407, 3509
SmiMI	CAYNNNNRTG	2 cut(s)	738, 2198
SmlI	CTYRAG	4 cut(s)	749, 755, 2322, 2344
SmoI	CTYRAG	4 cut(s)	749, 755, 2322, 2344
SpeI	ACTAGT	2 cut(s)	644, 3608
SphI	GCATGC	3 cut(s)	1999, 2679, 3664
SspMI	CTAG	5 cut(s)	584, 645, 1862, 3411, 3609
SstI	GAGCTC	1 cut(s)	3356
StyD4I	CCNGG	7 cut(s)	718, 1067, 1482, 1960, 2031, 2824, 3157
StyI	CCWWGG	2 cut(s)	63, 1129
TaaI	ACNGT	7 cut(s)	448, 1396, 1705, 2492, 2820, 3196, 3218
TaiI	ACGT	2 cut(s)	169, 520
TaqI	TCGA	9 cut(s)	17, 170, 522, 1006, 1059, 1835, 2648, 3252, 3350
TatI	WGTACW	1 cut(s)	2949
TauI	GCSGC	3 cut(s)	388, 1286, 3772
TfiI	GAWTC	6 cut(s)	92, 615, 2092, 2770, 2875, 3199
Tru1I	TTAA	9 cut(s)	36, 339, 639, 1257, 1608, 1910, 2057, 3089, 3750
Tru9I	TTAA	9 cut(s)	36, 339, 639, 1257, 1608, 1910, 2057, 3089, 3750
TscAI	CASTG	6 cut(s)	376, 400, 502, 988, 2838, 2857
TseFI	GTSAC	3 cut(s)	673, 2730, 2861
TseI	GCWGC	8 cut(s)	827, 2062, 2576, 2672, 2717, 3431, 3526, 3760
Tsp45I	GTSAC	3 cut(s)	673, 2730, 2861
TspGWI	ACGGA	2 cut(s)	35, 2434
TspRI	CASTG	6 cut(s)	376, 400, 502, 988, 2838, 2857
Van91I	CCANNNNNTGG	1 cut(s)	3278
VneI	GTGCAC	1 cut(s)	367
VpaK11BI	GGWCC	4 cut(s)	2525, 2783, 3407, 3509
XceI	RCATGY	7 cut(s)	140, 1999, 2273, 2679, 2688, 2755, 3664
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1490, 1787
XmiI	GTMKAC	3 cut(s)	207, 1835, 3481
XmnI	GAANNNNTTC	1 cut(s)	3491
XspI	CTAG	5 cut(s)	584, 645, 1862, 3411, 3609
ZrmI	AGTACT	1 cut(s)	2951
Zsp2I	ATGCAT	6 cut(s)	958, 1324, 1438, 1732, 2508, 3045

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.