pycom08g10440

Nucleoredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0005579
Physical Location & Seq
Forward (+)
8727536 .. 8728982
1447 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1140 bp
ATGGCAGTGCATAGCAGCAATATAGCAACCGTCCTCGAATCTGAAGGAGTTGAGTTCCTTCTATCCGGCGACACAAGGGTACCGTTGTTGTCATGTAATGGGAAGACAGTGTGCCTCTACTTCTCTGCAAATTGGTGTCGGCCTTGCAAGGCTCTTACCCCTCAGCTGGTGCGACTTTATGAAGTGCTTAGATTGGAAGGAAAAGAGTTTGAGATAATCTTCATATCCTTCGACCGTGATGAGGAAAAGTTCAATGAACACTTCAAGTGCATGCCGTGGCTGGCAGTGCCATTCGATGCTAATCTTCATAAAAGATTGAGTGACATGTACCGCATAGATCGCATCCCATCACTCATTTCATTAAGTTCAGATGGAATATCAATTGAGGAAGACTTGGTTGGATTAATTGAAGACTATGGAGCTGATGCATTTCCATTCACTAACAAGAGAAGAGAAGAGCTAAAGGCTGCCGATGAAGCAAAGCGTGAAGGGGGAAAAATCGAAGAGTTGTTGACGCATCAAGGAAGAAACCATGTCTTGTCTAGTGATGGCAGAGAGATACAGGCGTCTCAACTTGTTGGTAAGACAGTAGGCCTTTACTTTGGTGCACATTGGAGCCCTCCTTGCCGTGCTTTTACTTCCAAACTCATAGAAGCATACGAAGAGCTCATGACCTCCGGTGATCAAGACTTCGAAATCATCCTAGTCTCCACAGACCGAGACCTCAAGGAGTTTGAACTCAACACTAGTAGCATGCCATGGCTTGCCATACCCTACCAGGACAAAACAAGACAAGACCTTTGTAGAATCTTCGACATCAAAGTGATTCCGGCTCTGGTTCTGATAGGACCGAATGGGAAGGCGATTAGCACGAATGGGAAGGCCATGGTCTCCTTATACGGTGCCAAGGCCTTCCCGTTCACAGAAGCGAGGATCACAGAGCTCGAAGCAGAATTGAGAAAAGAAGGAGAGGCATTGCCTCCTCAATTGAAGGACTTGAAGCATAAACATTTGCTTAAGTTGGAGATGGCCAAAGCATTTGTGTGTGATTATTGCCAAAAACAGGGGAGGTTTTGGGCATTTTCTTGCGGTGTTTGTGATTACGATCTTCATCCAAACTGCGTAGAAAAATCATTGTAA

Protein Analysis

380

Amino Acids

42.9

Weight (kDa)

5.44

Isoelectric Point (pI)

42.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thioredoxin_2 PF13098 33 - 135 3.2e-06 Thioredoxin-like domain
Thioredoxin_8 PF13905 34 - 125 1.9e-24 Thioredoxin-like
AhpC-TSA PF00578 181 - 287 1.2e-06 AhpC/TSA family
Thioredoxin_8 PF13905 194 - 287 5e-25 Thioredoxin-like
C1_2 PF03107 334 - 375 2e-07 C1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 79
AccB1I GGYRCC 2 cut(s) 79, 902
AciI CCGC 2 cut(s) 331, 1089
AclWI GGATC 1 cut(s) 941
AcoI YGGCCR 1 cut(s) 1029
AcuI CTGAAG 1 cut(s) 63
AcyI GRCGYC 1 cut(s) 566
AfaI GTAC 2 cut(s) 81, 329
AfiI CCNNNNNNNGG 3 cut(s) 166, 241, 1063
AflII CTTAAG 1 cut(s) 1016
AflIII ACRYGT 1 cut(s) 324
AgsI TTSAA 6 cut(s) 253, 265, 410, 737, 991, 1000
AhlI ACTAGT 1 cut(s) 746
AjnI CCWGG 1 cut(s) 777
AjuI GAANNNNNNNTTGG 2 cut(s) 381, 413
AluBI AGCT 5 cut(s) 166, 422, 460, 667, 943
AluI AGCT 5 cut(s) 166, 422, 460, 667, 943
Alw21I GWGCWC 3 cut(s) 610, 669, 945
Alw26I GTCTC 4 cut(s) 573, 712, 714, 895
Alw44I GTGCAC 1 cut(s) 606
AlwI GGATC 1 cut(s) 941
AoxI GGCC 5 cut(s) 140, 592, 882, 909, 1029
ApaLI GTGCAC 1 cut(s) 606
ApeKI GCWGC 2 cut(s) 15, 467
ArsI GACNNNNNNTTYG 2 cut(s) 783, 815
AseI ATTAAT 1 cut(s) 404
Asp718I GGTACC 1 cut(s) 79
AspS9I GGNCC 1 cut(s) 848
AsuHPI GGTGA 1 cut(s) 692
AsuII TTCGAA 1 cut(s) 693
AvaII GGWCC 1 cut(s) 848
BaeGI GKGCMC 1 cut(s) 610
BaeI ACNNNNGTAYC 6 cut(s) 63, 71, 96, 104, 551, 584
BalI TGGCCA 1 cut(s) 1031
BanI GGYRCC 2 cut(s) 79, 902
BanII GRGCYC 3 cut(s) 620, 669, 945
BbsI GAAGAC 3 cut(s) 110, 396, 417
Bbv12I GWGCWC 3 cut(s) 610, 669, 945
BbvCI CCTCAGC 1 cut(s) 162
BbvI GCAGC 2 cut(s) 27, 454
BccI CCATC 4 cut(s) 355, 365, 542, 1021
BceAI ACGGC 2 cut(s) 259, 612
BciT130I CCWGG 1 cut(s) 779
BclI TGATCA 1 cut(s) 682
BcoDI GTCTC 4 cut(s) 573, 712, 714, 895
BcuI ACTAGT 1 cut(s) 746
BfaI CTAG 3 cut(s) 543, 704, 747
BfrI CTTAAG 1 cut(s) 1016
BisI GCNGC 2 cut(s) 16, 468
BlsI GCNGC 2 cut(s) 17, 469
Bme1390I CCNGG 1 cut(s) 779
Bme18I GGWCC 1 cut(s) 848
BmgT120I GGNCC 1 cut(s) 848
BmiI GGNNCC 3 cut(s) 81, 617, 904
BmrFI CCNGG 1 cut(s) 779
BmsI GCATC 4 cut(s) 286, 351, 415, 526
BpiI GAAGAC 3 cut(s) 110, 396, 417
Bpu10I CCTNAGC 1 cut(s) 162
Bpu14I TTCGAA 1 cut(s) 693
BpuEI CTTGAG 1 cut(s) 710
BsaBI GATNNNNATC 3 cut(s) 300, 1104, 1110
BsaHI GRCGYC 1 cut(s) 566
BsaI GGTCTC 2 cut(s) 714, 895
BsaJI CCNNGG 4 cut(s) 275, 758, 885, 906
BsaWI WCCGGW 1 cut(s) 677
Bsc4I CCNNNNNNNGG 3 cut(s) 166, 241, 1063
Bse3DI GCAATG 1 cut(s) 974
Bse8I GATNNNNATC 3 cut(s) 300, 1104, 1110
BseBI CCWGG 1 cut(s) 779
BseDI CCNNGG 4 cut(s) 275, 758, 885, 906
BseGI GGATG 3 cut(s) 342, 699, 1111
BseJI GATNNNNATC 3 cut(s) 300, 1104, 1110
BseLI CCNNNNNNNGG 3 cut(s) 166, 241, 1063
BseMI GCAATG 1 cut(s) 974
BseMII CTCAG 1 cut(s) 176
BseRI GAGGAG 1 cut(s) 972
BseSI GKGCMC 1 cut(s) 610
BseXI GCAGC 2 cut(s) 27, 454
Bsh1285I CGRYCG 1 cut(s) 235
BshFI GGCC 5 cut(s) 142, 594, 884, 911, 1031
BshNI GGYRCC 2 cut(s) 79, 902
BsiEI CGRYCG 1 cut(s) 235
BsiHKAI GWGCWC 3 cut(s) 610, 669, 945
BsiSI CCGG 3 cut(s) 66, 678, 830
BslI CCNNNNNNNGG 3 cut(s) 166, 241, 1063
BsmAI GTCTC 4 cut(s) 573, 712, 714, 895
BsmBI CGTCTC 1 cut(s) 573
BsnI GGCC 5 cut(s) 142, 594, 884, 911, 1031
Bso31I GGTCTC 2 cut(s) 714, 895
Bsp119I TTCGAA 1 cut(s) 693
Bsp1286I GDGCHC 4 cut(s) 610, 620, 669, 945
Bsp143I GATC 4 cut(s) 337, 682, 933, 1105
Bsp19I CCATGG 2 cut(s) 758, 885
BspACI CCGC 2 cut(s) 331, 1089
BspANI GGCC 5 cut(s) 142, 594, 884, 911, 1031
BspCNI CTCAG 1 cut(s) 175
BspHI TCATGA 1 cut(s) 669
BspLI GGNNCC 3 cut(s) 81, 617, 904
BspPI GGATC 1 cut(s) 941
BspQI GCTCTTC 2 cut(s) 450, 657
BspT104I TTCGAA 1 cut(s) 693
BspT107I GGYRCC 2 cut(s) 79, 902
BspTI CTTAAG 1 cut(s) 1016
BspTNI GGTCTC 2 cut(s) 714, 895
BsrDI GCAATG 1 cut(s) 974
BssECI CCNNGG 4 cut(s) 275, 758, 885, 906
BssMI GATC 4 cut(s) 337, 682, 933, 1105
BssNI GRCGYC 1 cut(s) 566
BssT1I CCWWGG 3 cut(s) 758, 885, 906
Bst2UI CCWGG 1 cut(s) 779
Bst4CI ACNGT 6 cut(s) 31, 84, 109, 236, 589, 902
Bst6I CTCTTC 4 cut(s) 445, 450, 498, 657
BstACI GRCGYC 1 cut(s) 566
BstAFI CTTAAG 1 cut(s) 1016
BstBI TTCGAA 1 cut(s) 693
BstC8I GCNNGC 4 cut(s) 272, 282, 755, 765
BstDEI CTNAG 2 cut(s) 162, 188
BstDSI CCRYGG 3 cut(s) 275, 758, 885
BstF5I GGATG 3 cut(s) 342, 699, 1111
BstKTI GATC 4 cut(s) 340, 685, 936, 1108
BstMAI GTCTC 4 cut(s) 573, 712, 714, 895
BstMBI GATC 4 cut(s) 337, 682, 933, 1105
BstMCI CGRYCG 1 cut(s) 235
BstMWI GCNNNNNNNGC 4 cut(s) 286, 339, 476, 624
BstNI CCWGG 1 cut(s) 779
BstNSI RCATGY 3 cut(s) 274, 328, 757
BstSCI CCNGG 1 cut(s) 777
BstSLI GKGCMC 1 cut(s) 610
BstV1I GCAGC 2 cut(s) 27, 454
BstV2I GAAGAC 3 cut(s) 110, 396, 417
BsuRI GGCC 5 cut(s) 142, 594, 884, 911, 1031
BtgI CCRYGG 3 cut(s) 275, 758, 885
BtsCI GGATG 3 cut(s) 342, 699, 1111
BtsI GCAGTG 2 cut(s) 12, 291
BtsIMutI CAGTG 3 cut(s) 12, 114, 291
Cac8I GCNNGC 4 cut(s) 272, 282, 755, 765
CciI TCATGA 1 cut(s) 669
Cfr13I GGNCC 1 cut(s) 848
CseI GACGC 2 cut(s) 523, 555
Csp6I GTAC 2 cut(s) 80, 328
CviAII CATG 8 cut(s) 93, 271, 325, 533, 670, 754, 759, 886
CviQI GTAC 2 cut(s) 80, 328
DdeI CTNAG 2 cut(s) 162, 188
DpnI GATC 4 cut(s) 339, 684, 935, 1107
DpnII GATC 4 cut(s) 337, 682, 933, 1105
EaeI YGGCCR 1 cut(s) 1029
Eam1104I CTCTTC 4 cut(s) 445, 450, 498, 657
EarI CTCTTC 4 cut(s) 445, 450, 498, 657
Ecl136II GAGCTC 2 cut(s) 667, 943
Eco130I CCWWGG 3 cut(s) 758, 885, 906
Eco147I AGGCCT 2 cut(s) 594, 911
Eco24I GRGCYC 3 cut(s) 620, 669, 945
Eco31I GGTCTC 2 cut(s) 714, 895
Eco47I GGWCC 1 cut(s) 848
Eco53kI GAGCTC 2 cut(s) 667, 943
Eco57I CTGAAG 1 cut(s) 63
EcoICRI GAGCTC 2 cut(s) 667, 943
EcoRII CCWGG 1 cut(s) 777
EcoT14I CCWWGG 3 cut(s) 758, 885, 906
EcoT22I ATGCAT 1 cut(s) 430
EcoT38I GRGCYC 3 cut(s) 620, 669, 945
ErhI CCWWGG 3 cut(s) 758, 885, 906
Esp3I CGTCTC 1 cut(s) 573
FaeI CATG 8 cut(s) 96, 274, 328, 536, 673, 757, 762, 889
FatI CATG 8 cut(s) 92, 270, 324, 532, 669, 753, 758, 885
FbaI TGATCA 1 cut(s) 682
Fnu4HI GCNGC 2 cut(s) 16, 468
FokI GGATG 3 cut(s) 329, 686, 1098
FriOI GRGCYC 3 cut(s) 620, 669, 945
Fsp4HI GCNGC 2 cut(s) 16, 468
FspBI CTAG 3 cut(s) 543, 704, 747
GluI GCNGC 2 cut(s) 16, 468
HaeIII GGCC 5 cut(s) 142, 594, 884, 911, 1031
HapII CCGG 3 cut(s) 66, 678, 830
HgaI GACGC 2 cut(s) 523, 555
Hin1I GRCGYC 1 cut(s) 566
Hin1II CATG 8 cut(s) 96, 274, 328, 536, 673, 757, 762, 889
HincII GTYRAC 1 cut(s) 513
HindII GTYRAC 1 cut(s) 513
HinfI GANTC 3 cut(s) 38, 807, 826
HpaII CCGG 3 cut(s) 66, 678, 830
HphI GGTGA 1 cut(s) 692
Hpy166II GTNNAC 3 cut(s) 513, 608, 921
Hpy188I TCNGA 3 cut(s) 43, 370, 843
Hpy188III TCNNGA 2 cut(s) 670, 686
Hpy8I GTNNAC 3 cut(s) 513, 608, 921
HpyCH4III ACNGT 6 cut(s) 31, 84, 109, 236, 589, 902
HpyCH4V TGCA 6 cut(s) 10, 128, 147, 270, 428, 608
HpyF10VI GCNNNNNNNGC 4 cut(s) 286, 339, 476, 624
HpyF3I CTNAG 2 cut(s) 162, 188
Hsp92I GRCGYC 1 cut(s) 566
Hsp92II CATG 8 cut(s) 96, 274, 328, 536, 673, 757, 762, 889
KpnI GGTACC 1 cut(s) 83
Ksp22I TGATCA 1 cut(s) 682
Kzo9I GATC 4 cut(s) 337, 682, 933, 1105
LguI GCTCTTC 2 cut(s) 450, 657
LmnI GCTCC 2 cut(s) 419, 615
Lsp1109I GCAGC 2 cut(s) 27, 454
LweI GCATC 4 cut(s) 286, 351, 415, 526
MaeI CTAG 3 cut(s) 543, 704, 747
MaeIII GTNAC 1 cut(s) 320
MalI GATC 4 cut(s) 339, 684, 935, 1107
MboI GATC 4 cut(s) 337, 682, 933, 1105
MfeI CAATTG 2 cut(s) 381, 986
MhlI GDGCHC 4 cut(s) 610, 620, 669, 945
MlsI TGGCCA 1 cut(s) 1031
MluCI AATT 5 cut(s) 130, 381, 405, 953, 986
MluNI TGGCCA 1 cut(s) 1031
MmeI TCCRAC 2 cut(s) 379, 1002
Mox20I TGGCCA 1 cut(s) 1031
Mph1103I ATGCAT 1 cut(s) 430
MscI TGGCCA 1 cut(s) 1031
MseI TTAA 3 cut(s) 362, 404, 1017
MslI CAYNNNNRTG 2 cut(s) 821, 1042
Msp20I TGGCCA 1 cut(s) 1031
MspA1I CMGCKG 1 cut(s) 166
MspCI CTTAAG 1 cut(s) 1016
MspI CCGG 3 cut(s) 66, 678, 830
MspR9I CCNGG 1 cut(s) 779
MunI CAATTG 2 cut(s) 381, 986
MvaI CCWGG 1 cut(s) 779
MwoI GCNNNNNNNGC 4 cut(s) 286, 339, 476, 624
NcoI CCATGG 2 cut(s) 758, 885
NdeII GATC 4 cut(s) 337, 682, 933, 1105
NlaIII CATG 8 cut(s) 96, 274, 328, 536, 673, 757, 762, 889
NlaIV GGNNCC 3 cut(s) 81, 617, 904
NmuCI GTSAC 1 cut(s) 320
NsiI ATGCAT 1 cut(s) 430
NspI RCATGY 3 cut(s) 274, 328, 757
NspV TTCGAA 1 cut(s) 693
PaeI GCATGC 2 cut(s) 274, 757
PagI TCATGA 1 cut(s) 669
PceI AGGCCT 2 cut(s) 594, 911
PciI ACATGT 1 cut(s) 324
PciSI GCTCTTC 2 cut(s) 450, 657
PfeI GAWTC 3 cut(s) 38, 807, 826
PkrI GCNGC 2 cut(s) 17, 469
PscI ACATGT 1 cut(s) 324
PshBI ATTAAT 1 cut(s) 404
Psp124BI GAGCTC 2 cut(s) 669, 945
Psp6I CCWGG 1 cut(s) 777
PspGI CCWGG 1 cut(s) 777
PspN4I GGNNCC 3 cut(s) 81, 617, 904
PspPI GGNCC 1 cut(s) 848
PvuII CAGCTG 1 cut(s) 166
RsaI GTAC 2 cut(s) 81, 329
RsaNI GTAC 2 cut(s) 80, 328
RseI CAYNNNNRTG 2 cut(s) 821, 1042
SacI GAGCTC 2 cut(s) 669, 945
SapI GCTCTTC 2 cut(s) 450, 657
SaqAI TTAA 3 cut(s) 362, 404, 1017
SatI GCNGC 2 cut(s) 16, 468
Sau3AI GATC 4 cut(s) 337, 682, 933, 1105
Sau96I GGNCC 1 cut(s) 848
ScrFI CCNGG 1 cut(s) 779
SduI GDGCHC 4 cut(s) 610, 620, 669, 945
SetI ASST 9 cut(s) 168, 424, 462, 669, 677, 726, 801, 945, 1073
SfaNI GCATC 4 cut(s) 286, 351, 415, 526
SfuI TTCGAA 1 cut(s) 693
SinI GGWCC 1 cut(s) 848
SmiMI CAYNNNNRTG 2 cut(s) 821, 1042
SmlI CTYRAG 2 cut(s) 725, 1016
SmoI CTYRAG 2 cut(s) 725, 1016
SpeI ACTAGT 1 cut(s) 746
SphI GCATGC 2 cut(s) 274, 757
Sse9I AATT 5 cut(s) 130, 381, 405, 953, 986
SseBI AGGCCT 2 cut(s) 594, 911
SsiI CCGC 2 cut(s) 331, 1089
SspMI CTAG 3 cut(s) 543, 704, 747
SstI GAGCTC 2 cut(s) 669, 945
StuI AGGCCT 2 cut(s) 594, 911
StyD4I CCNGG 1 cut(s) 777
StyI CCWWGG 3 cut(s) 758, 885, 906
TaaI ACNGT 6 cut(s) 31, 84, 109, 236, 589, 902
TaqI TCGA 7 cut(s) 36, 231, 294, 501, 693, 813, 945
TaqII GACCGA 2 cut(s) 732, 865
TasI AATT 5 cut(s) 130, 381, 405, 953, 986
TfiI GAWTC 3 cut(s) 38, 807, 826
Tru1I TTAA 3 cut(s) 362, 404, 1017
Tru9I TTAA 3 cut(s) 362, 404, 1017
TscAI CASTG 3 cut(s) 12, 114, 291
TseFI GTSAC 1 cut(s) 320
TseI GCWGC 2 cut(s) 15, 467
Tsp45I GTSAC 1 cut(s) 320
TspDTI ATGAA 7 cut(s) 195, 211, 270, 296, 348, 489, 1100
TspRI CASTG 3 cut(s) 12, 114, 291
Vha464I CTTAAG 1 cut(s) 1016
VneI GTGCAC 1 cut(s) 606
VpaK11BI GGWCC 1 cut(s) 848
VspI ATTAAT 1 cut(s) 404
XceI RCATGY 3 cut(s) 274, 328, 757
XspI CTAG 3 cut(s) 543, 704, 747
Zsp2I ATGCAT 1 cut(s) 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.