pycom08g13020

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0012579
Physical Location & Seq
Forward (+)
11645513 .. 11646763
1251 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 696 bp
ATGGCTGCTATTTCACAAAGAGATGCGATTTACTCCACTTTGCACTACCTTGACCTCAACAATCTTGGAGAAACAGCTCGAACACTTGAGAGGGAATCCGGCTTGTTCTTCAGCTTGCCATACTTTGAAGAATGTTTCATTCACGGAGAGTTTGACGAGGCAGAAGAGTACTTCAACGGCTTCACCACAGTGCATGACAACATCTACTCTACGAAGGTCATTTTTGAGCTTCGTTGGCACAAATTCTTGGAGGCATTGGAGGATAATAACTATGAGGAGGCAAATGAACTTCTCCATGAAGAACTCACAACCTTCCTGCCGTACAATCAAAATTTGATTGCACAGGCGACCGAGATTATGAACCTACATGACGTTAGTATCTACCTACGACTTCAGGGCTATGGAGACCTTATTGAAGCAAGAACTGCGGCAATGATTAATATAAGGAGATGTTTAGGGGCCAATCCACGTCTGGTTGGGAAAATCCGATATCGAATTCCAAACCACTACAGTAGTGGTGGCCTTGCCAATCTAGCACTCCCTCCTCCACCCATAGTTCTGCAAATTCCACGAGCATCTCCAGCAGCATTACAACCTCCAACAACTCCATTGCTTGTACAAGTCCATTTCAGGCTTGTTCCAGGCTTCGGATATTGGGTTGTTATTAATGTAATTAGGAGGCAGGACATTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04137 ko04140 ko04934 map04137 map04140 map04934
Pfam Domains
Protein Families
WD40

Protein Analysis

232

Amino Acids

26.48

Weight (kDa)

5.35

Isoelectric Point (pI)

53.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR1-like_2nd PF21889 39 - 161 5e-28 TPR1-like, CTLH-containing domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 428
AcsI RAATTY 4 cut(s) 242, 331, 495, 564
AcuI CTGAAG 2 cut(s) 94, 377
AfaI GTAC 3 cut(s) 170, 323, 618
AfiI CCNNNNNNNGG 1 cut(s) 647
AgsI TTSAA 3 cut(s) 128, 175, 416
AjiI CACGTC 1 cut(s) 470
AjnI CCWGG 1 cut(s) 640
AleI CACNNNNGTG 1 cut(s) 188
AluBI AGCT 3 cut(s) 77, 114, 229
AluI AGCT 3 cut(s) 77, 114, 229
Alw26I GTCTC 1 cut(s) 399
AoxI GGCC 2 cut(s) 459, 520
ApeKI GCWGC 2 cut(s) 5, 584
ApoI RAATTY 4 cut(s) 242, 331, 495, 564
AseI ATTAAT 2 cut(s) 438, 666
AspS9I GGNCC 1 cut(s) 459
AsuHPI GGTGA 1 cut(s) 175
BaeI ACNNNNGTAYC 2 cut(s) 361, 394
BauI CACGAG 1 cut(s) 570
BbvI GCAGC 1 cut(s) 596
BceAI ACGGC 2 cut(s) 193, 304
BciT130I CCWGG 1 cut(s) 642
BcoDI GTCTC 1 cut(s) 399
BfaI CTAG 1 cut(s) 533
BfmI CTRYAG 1 cut(s) 508
BisI GCNGC 3 cut(s) 6, 429, 585
BlsI GCNGC 3 cut(s) 7, 430, 586
BmcAI AGTACT 1 cut(s) 170
Bme1390I CCNGG 1 cut(s) 642
BmgBI CACGTC 1 cut(s) 470
BmgT120I GGNCC 1 cut(s) 459
BmiI GGNNCC 1 cut(s) 460
BmrFI CCNGG 1 cut(s) 642
BmsI GCATC 2 cut(s) 13, 584
BpmI CTGGAG 1 cut(s) 564
BpuEI CTTGAG 1 cut(s) 107
BsaI GGTCTC 1 cut(s) 399
Bsc4I CCNNNNNNNGG 1 cut(s) 647
Bse3DI GCAATG 2 cut(s) 438, 608
BseBI CCWGG 1 cut(s) 642
BseLI CCNNNNNNNGG 1 cut(s) 647
BseMI GCAATG 2 cut(s) 438, 608
BseRI GAGGAG 2 cut(s) 290, 534
BseXI GCAGC 1 cut(s) 596
Bsh1285I CGRYCG 1 cut(s) 351
BshFI GGCC 2 cut(s) 461, 522
BsiEI CGRYCG 1 cut(s) 351
BsiSI CCGG 1 cut(s) 99
BslI CCNNNNNNNGG 1 cut(s) 647
BsmAI GTCTC 1 cut(s) 399
BsnI GGCC 2 cut(s) 461, 522
Bso31I GGTCTC 1 cut(s) 399
Bsp1407I TGTACA 1 cut(s) 616
BspACI CCGC 1 cut(s) 428
BspANI GGCC 2 cut(s) 461, 522
BspLI GGNNCC 1 cut(s) 460
BspTNI GGTCTC 1 cut(s) 399
BsrDI GCAATG 2 cut(s) 438, 608
BsrGI TGTACA 1 cut(s) 616
BssSI CACGAG 1 cut(s) 570
Bst2BI CACGAG 1 cut(s) 570
Bst2UI CCWGG 1 cut(s) 642
Bst4CI ACNGT 2 cut(s) 190, 512
Bst6I CTCTTC 1 cut(s) 159
BstAPI GCANNNNNTGC 1 cut(s) 425
BstAUI TGTACA 1 cut(s) 616
BstC8I GCNNGC 1 cut(s) 116
BstMAI GTCTC 1 cut(s) 399
BstMCI CGRYCG 1 cut(s) 351
BstMWI GCNNNNNNNGC 4 cut(s) 235, 425, 533, 581
BstNI CCWGG 1 cut(s) 642
BstSCI CCNGG 1 cut(s) 640
BstSFI CTRYAG 1 cut(s) 508
BstV1I GCAGC 1 cut(s) 596
BsuRI GGCC 2 cut(s) 461, 522
BtrI CACGTC 1 cut(s) 470
BtsIMutI CAGTG 1 cut(s) 195
Cac8I GCNNGC 1 cut(s) 116
Cfr13I GGNCC 1 cut(s) 459
Csp6I GTAC 3 cut(s) 169, 322, 617
CviAII CATG 3 cut(s) 194, 296, 368
CviQI GTAC 3 cut(s) 169, 322, 617
Eam1104I CTCTTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 159
Eco31I GGTCTC 1 cut(s) 399
Eco32I GATATC 1 cut(s) 491
Eco57I CTGAAG 2 cut(s) 94, 377
EcoRI GAATTC 1 cut(s) 495
EcoRII CCWGG 1 cut(s) 640
EcoRV GATATC 1 cut(s) 491
FaeI CATG 3 cut(s) 197, 299, 371
FaiI YATR 9 cut(s) 121, 195, 273, 297, 359, 369, 402, 443, 554
FatI CATG 3 cut(s) 193, 295, 367
Fnu4HI GCNGC 3 cut(s) 6, 429, 585
Fsp4HI GCNGC 3 cut(s) 6, 429, 585
FspBI CTAG 1 cut(s) 533
GluI GCNGC 3 cut(s) 6, 429, 585
GsuI CTGGAG 1 cut(s) 564
HaeIII GGCC 2 cut(s) 461, 522
HapII CCGG 1 cut(s) 99
Hin1II CATG 3 cut(s) 197, 299, 371
HinfI GANTC 1 cut(s) 95
HpaII CCGG 1 cut(s) 99
HphI GGTGA 1 cut(s) 175
Hpy188I TCNGA 2 cut(s) 488, 650
HpyAV CCTTC 2 cut(s) 208, 322
HpyCH4III ACNGT 2 cut(s) 190, 512
HpyCH4IV ACGT 2 cut(s) 372, 469
HpyCH4V TGCA 4 cut(s) 43, 193, 341, 562
HpyF10VI GCNNNNNNNGC 4 cut(s) 235, 425, 533, 581
HpySE526I ACGT 2 cut(s) 372, 469
Hsp92II CATG 3 cut(s) 197, 299, 371
Lsp1109I GCAGC 1 cut(s) 596
LweI GCATC 2 cut(s) 13, 584
MaeI CTAG 1 cut(s) 533
MaeII ACGT 2 cut(s) 372, 469
MboII GAAGA 4 cut(s) 100, 140, 176, 311
MluCI AATT 5 cut(s) 242, 331, 495, 564, 672
MmeI TCCRAC 1 cut(s) 623
MseI TTAA 2 cut(s) 438, 666
MslI CAYNNNNRTG 1 cut(s) 188
MspI CCGG 1 cut(s) 99
MspR9I CCNGG 1 cut(s) 642
MvaI CCWGG 1 cut(s) 642
MwoI GCNNNNNNNGC 4 cut(s) 235, 425, 533, 581
NlaIII CATG 3 cut(s) 197, 299, 371
NlaIV GGNNCC 1 cut(s) 460
OliI CACNNNNGTG 1 cut(s) 188
PfeI GAWTC 1 cut(s) 95
PkrI GCNGC 3 cut(s) 7, 430, 586
PshBI ATTAAT 2 cut(s) 438, 666
Psp6I CCWGG 1 cut(s) 640
PspGI CCWGG 1 cut(s) 640
PspN4I GGNNCC 1 cut(s) 460
PspPI GGNCC 1 cut(s) 459
RsaI GTAC 3 cut(s) 170, 323, 618
RsaNI GTAC 3 cut(s) 169, 322, 617
RseI CAYNNNNRTG 1 cut(s) 188
SaqAI TTAA 2 cut(s) 438, 666
SatI GCNGC 3 cut(s) 6, 429, 585
Sau96I GGNCC 1 cut(s) 459
ScaI AGTACT 1 cut(s) 170
ScrFI CCNGG 1 cut(s) 642
SfaNI GCATC 2 cut(s) 13, 584
SfcI CTRYAG 1 cut(s) 508
SmiMI CAYNNNNRTG 1 cut(s) 188
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
Sse9I AATT 5 cut(s) 242, 331, 495, 564, 672
SsiI CCGC 1 cut(s) 428
SspMI CTAG 1 cut(s) 533
StyD4I CCNGG 1 cut(s) 640
TaaI ACNGT 2 cut(s) 190, 512
TaiI ACGT 2 cut(s) 375, 472
TaqI TCGA 2 cut(s) 79, 493
TaqII GACCGA 1 cut(s) 365
TasI AATT 5 cut(s) 242, 331, 495, 564, 672
TatI WGTACW 2 cut(s) 168, 616
TauI GCSGC 1 cut(s) 431
TfiI GAWTC 1 cut(s) 95
Tru1I TTAA 2 cut(s) 438, 666
Tru9I TTAA 2 cut(s) 438, 666
TscAI CASTG 1 cut(s) 195
TseI GCWGC 2 cut(s) 5, 584
TspDTI ATGAA 4 cut(s) 127, 300, 312, 374
TspGWI ACGGA 1 cut(s) 159
TspRI CASTG 1 cut(s) 195
VspI ATTAAT 2 cut(s) 438, 666
XapI RAATTY 4 cut(s) 242, 331, 495, 564
XcmI CCANNNNNNNNNTGG 2 cut(s) 469, 512
XspI CTAG 1 cut(s) 533
ZrmI AGTACT 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.