pycom08g13450

PHD-finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0006788
Physical Location & Seq
Reverse (-)
12260079 .. 12264228
4150 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1812 bp
ATGGGAGTCGAAGAAGGAAACAGCAATGACGATGGTATGGAATCCAATAAAGAAGTTGAATGCTTGAAGAGTGAATCCAATGGATTTGGAAATTGTAATGACATTGCCAAAGGCAGCTCTGGTGCAAGTGAGGGTGTTCAAACTTATAAAAGGCGGAGGCAGGCGAGGTTCCGTTGGGATAGCAGGTCACAGGATGATGGGGGAGCTGATGTGGAATCATCGAGTCAATTAGCAGACCAGCGTCTAAAGGAACCAGTGTGCACAGATATACACAATAACTCTTGTGAGCAAGTCCATGTTCGCATGAATAGTTCAGATGCACGTTCAGATAGGCACTGGACAACTTCCGTACTGGAGAACATGTATGAGTCACTAGGTGATGATGAAGGTGGTGTACAAGTGTGCATCCGAGAAGCGATTGCGCATTTTCGAGAGGTTGATCACACAACACGAGTTAAGGAATCTGGTCATCATAATGAGGATAGGCACCGATACTGTTTTCTTACACGGTCTATATTGAATAGATCTCAAAATGCCGCCAGCAGGCATGCTGGTGTTATATCTAATGGATCTTCAAATAAATCAAATCATCATACAGTTACCGCGATGTGTCAGCACGCTTTTTATAATGTTTTAGTTTCAGAAAAGTTTGCCTCTTTGTGCAAACTGCTGCTGGAAAATTTTCAAGGAATCAAGGATGACAGTATTTTTGACTTTAGTCTTATAAACTCAAGGATGAAAAGGGGAGATTATGAGCACTCGCCTATGCTCTTCTCAAATGATATGCAACAGGTATGGAGAAAGCTTCAAGTGATTGGTACCAACTTGATTTCTCTTGCAAAAAACCTCTCGGATGTGTCAAGGGCTTCTTACAATGAACAGGTGGGAGGTTTAGTCCACAATACAATGAAATATGGAAAAAATGAGTTCTACCCCTTGGGATCTGACTTTCACACTAAACTGAAGCAAACAGAGGATTGTTGTGTGCACAGTGTATGCACTTGCAGGTGCTGCGGATGCTGTGCAAATGGGAAAGATTGTTTAGTATGTGATTCATGTGAGGAGATGTACCATATCTCTTGCATTGAGCCTGCTGTCAAACAGATTCCTCCAAGTTGGTATTGTGCTAGGTGCAATGCAAGTGGTCTTGGATCATCCCATGAGAACTGTGTCGTGTGTAAGAAGTTGAATGTGGCCAAGACTCTAGTTGATGGAGTTGGAGGTGAAAGTGTTGCTACAGACGAAGAAACAGTCGATGAGACAGGTCAAAATTCAAAATTGAGTGCAGATGATGGAATCCAACTATCAGAAGAAAGCAAAGAAATTTGCAAGACTTGTGGACTTGTGGTAAAAAACGGTGAGAGGTTGAGGATATGTGGTCATCCATACTGCCCCAAGAAATACTACCATATGAGGTGTCTGACAACTAACCAGTCAAGATCATACGGTCCCCGATGGTACTGCTATTCTTGTCTATGCAGAAGTTGTCTCACTGATAAGGATGATGATATGATTGTGCTTTGTGATGGCTGTGATCATGCGTACCACCTCTATTGCATGGAACCACCACGGACCTCTATTCCTGCTGGAAAATGGTTTTGCAGAAAATGCGATGCAGGAATTAAGGCCATACGCAAGGCAAGAAAGGCTTATGATAAGAAAGAAAAGACAGAGAGAGAGAAAGATGAAGGATCAAGGAAAGAAAAATGCGATGACAGGGAATCAGAACATGGTAGAGGGGGTATGGAGGTGCTTCTCTGCGCCGTCAATACTCTAGATGATGAAGAGGTTATGAAGAGTAAAAAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHD

Protein Analysis

604

Amino Acids

67.72

Weight (kDa)

6.24

Isoelectric Point (pI)

46.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD PF00628 493 - 537 4.3e-11 PHD-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 147, 627, 725
AarI CACCTGC 1 cut(s) 996
Acc16I TGCGCA 1 cut(s) 423
Acc36I ACCTGC 2 cut(s) 174, 996
Acc65I GGTACC 1 cut(s) 818
AccB1I GGYRCC 2 cut(s) 486, 818
AccII CGCG 1 cut(s) 605
AciI CCGC 4 cut(s) 154, 537, 603, 1014
AclWI GGATC 4 cut(s) 577, 949, 1159, 1699
AcoI YGGCCR 1 cut(s) 1194
AcsI RAATTY 3 cut(s) 679, 1270, 1323
AcuI CTGAAG 1 cut(s) 983
AdeI CACNNNGTG 1 cut(s) 377
AfaI GTAC 6 cut(s) 351, 396, 820, 1070, 1460, 1544
AfiI CCNNNNNNNGG 1 cut(s) 543
AflIII ACRYGT 1 cut(s) 360
AgsI TTSAA 9 cut(s) 59, 67, 140, 520, 576, 686, 809, 1189, 1275
AluBI AGCT 3 cut(s) 117, 206, 805
AluI AGCT 3 cut(s) 117, 206, 805
Alw21I GWGCWC 3 cut(s) 263, 759, 990
Alw26I GTCTC 2 cut(s) 1253, 1493
Alw44I GTGCAC 2 cut(s) 259, 986
AlwI GGATC 4 cut(s) 577, 949, 1159, 1699
AlwNI CAGNNNCTG 1 cut(s) 1011
AoxI GGCC 2 cut(s) 1194, 1626
ApaLI GTGCAC 2 cut(s) 259, 986
ApeKI GCWGC 3 cut(s) 114, 670, 1011
ApoI RAATTY 3 cut(s) 679, 1270, 1323
ArsI GACNNNNNNTTYG 4 cut(s) 692, 724, 1236, 1268
Asp700I GAANNNNTTC 1 cut(s) 681
Asp718I GGTACC 1 cut(s) 818
AspLEI GCGC 2 cut(s) 424, 1763
AspS9I GGNCC 2 cut(s) 1448, 1572
AsuHPI GGTGA 3 cut(s) 389, 1235, 1370
AvaII GGWCC 2 cut(s) 1448, 1572
BaeGI GKGCMC 2 cut(s) 263, 990
BalI TGGCCA 1 cut(s) 1196
BanI GGYRCC 2 cut(s) 486, 818
BarI GAAGNNNNNNTAC 2 cut(s) 378, 410
BauI CACGAG 1 cut(s) 450
Bbv12I GWGCWC 3 cut(s) 263, 759, 990
BbvI GCAGC 3 cut(s) 126, 657, 998
BccI CCATC 6 cut(s) 26, 191, 1205, 1286, 1449, 1520
BceAI ACGGC 1 cut(s) 1748
BcgI CGANNNNNNTGC 2 cut(s) 1443, 1477
BclI TGATCA 2 cut(s) 439, 1534
BcoDI GTCTC 2 cut(s) 1253, 1493
BfaI CTAG 4 cut(s) 374, 1128, 1205, 1775
BfmI CTRYAG 1 cut(s) 1236
BfuAI ACCTGC 2 cut(s) 174, 996
BglII AGATCT 1 cut(s) 524
BisI GCNGC 4 cut(s) 115, 537, 671, 1012
BlsI GCNGC 4 cut(s) 116, 538, 672, 1013
Bme18I GGWCC 2 cut(s) 1448, 1572
BmgT120I GGNCC 2 cut(s) 1448, 1572
BmiI GGNNCC 6 cut(s) 170, 252, 488, 820, 1450, 1563
BmsI GCATC 4 cut(s) 307, 414, 1007, 1603
BoxI GACNNNNGTC 2 cut(s) 240, 717
BpmI CTGGAG 1 cut(s) 374
BpuEI CTTGAG 1 cut(s) 715
BsaJI CCNNGG 2 cut(s) 936, 1568
BsaXI ACNNNNNCTCC 6 cut(s) 195, 225, 347, 377, 879, 909
Bsc4I CCNNNNNNNGG 1 cut(s) 543
Bse1I ACTGG 4 cut(s) 254, 341, 357, 1432
Bse3DI GCAATG 3 cut(s) 31, 102, 1141
BseDI CCNNGG 2 cut(s) 936, 1568
BseGI GGATG 9 cut(s) 199, 405, 703, 741, 859, 1022, 1154, 1381, 1507
BseLI CCNNNNNNNGG 1 cut(s) 543
BseMI GCAATG 3 cut(s) 31, 102, 1141
BseNI ACTGG 4 cut(s) 254, 341, 357, 1432
BseRI GAGGAG 1 cut(s) 1076
BseSI GKGCMC 2 cut(s) 263, 990
BseXI GCAGC 3 cut(s) 126, 657, 998
BsgI GTGCAG 1 cut(s) 1305
Bsh1236I CGCG 1 cut(s) 605
BshFI GGCC 2 cut(s) 1196, 1628
BshNI GGYRCC 2 cut(s) 486, 818
BsiHKAI GWGCWC 3 cut(s) 263, 759, 990
BslFI GGGAC 1 cut(s) 1434
BslI CCNNNNNNNGG 1 cut(s) 543
BsmAI GTCTC 2 cut(s) 1253, 1493
BsmFI GGGAC 1 cut(s) 1434
BsmI GAATGC 1 cut(s) 65
BsnI GGCC 2 cut(s) 1196, 1628
Bsp1286I GDGCHC 3 cut(s) 263, 759, 990
Bsp1407I TGTACA 1 cut(s) 394
Bsp143I GATC 8 cut(s) 439, 524, 569, 941, 1151, 1439, 1534, 1691
BspACI CCGC 4 cut(s) 154, 537, 603, 1014
BspANI GGCC 2 cut(s) 1196, 1628
BspFNI CGCG 1 cut(s) 605
BspLI GGNNCC 6 cut(s) 170, 252, 488, 820, 1450, 1563
BspMI ACCTGC 2 cut(s) 174, 996
BspPI GGATC 4 cut(s) 577, 949, 1159, 1699
BspQI GCTCTTC 1 cut(s) 776
BspT107I GGYRCC 2 cut(s) 486, 818
BsrDI GCAATG 3 cut(s) 31, 102, 1141
BsrGI TGTACA 1 cut(s) 394
BsrI ACTGG 4 cut(s) 254, 341, 357, 1432
BssECI CCNNGG 2 cut(s) 936, 1568
BssMI GATC 8 cut(s) 439, 524, 569, 941, 1151, 1439, 1534, 1691
BssSI CACGAG 1 cut(s) 450
BssT1I CCWWGG 1 cut(s) 936
Bst2BI CACGAG 1 cut(s) 450
Bst4CI ACNGT 9 cut(s) 497, 510, 598, 704, 992, 1169, 1252, 1358, 1448
Bst6I CTCTTC 4 cut(s) 62, 776, 1779, 1790
BstAPI GCANNNNNTGC 2 cut(s) 1011, 1608
BstAUI TGTACA 1 cut(s) 394
BstC8I GCNNGC 6 cut(s) 162, 541, 545, 549, 618, 1092
BstDSI CCRYGG 1 cut(s) 1568
BstF5I GGATG 9 cut(s) 199, 405, 703, 741, 859, 1022, 1154, 1381, 1507
BstFNI CGCG 1 cut(s) 605
BstHHI GCGC 2 cut(s) 424, 1763
BstKTI GATC 8 cut(s) 442, 527, 572, 944, 1154, 1442, 1537, 1694
BstMAI GTCTC 2 cut(s) 1253, 1493
BstMBI GATC 8 cut(s) 439, 524, 569, 941, 1151, 1439, 1534, 1691
BstMWI GCNNNNNNNGC 4 cut(s) 1011, 1017, 1608, 1646
BstNSI RCATGY 2 cut(s) 364, 551
BstPAI GACNNNNGTC 2 cut(s) 240, 717
BstSFI CTRYAG 1 cut(s) 1236
BstSLI GKGCMC 2 cut(s) 263, 990
BstUI CGCG 1 cut(s) 605
BstV1I GCAGC 3 cut(s) 126, 657, 998
BstX2I RGATCY 3 cut(s) 524, 569, 941
BstYI RGATCY 3 cut(s) 524, 569, 941
BsuRI GGCC 2 cut(s) 1196, 1628
BtgI CCRYGG 1 cut(s) 1568
BtgZI GCGATG 3 cut(s) 620, 1626, 1725
BtsCI GGATG 9 cut(s) 199, 405, 703, 741, 859, 1022, 1154, 1381, 1507
BtsIMutI CAGTG 4 cut(s) 261, 334, 997, 1491
BveI ACCTGC 2 cut(s) 174, 996
Cac8I GCNNGC 6 cut(s) 162, 541, 545, 549, 618, 1092
CaiI CAGNNNCTG 1 cut(s) 1011
CfoI GCGC 2 cut(s) 424, 1763
Cfr13I GGNCC 2 cut(s) 1448, 1572
CseI GACGC 1 cut(s) 230
Csp6I GTAC 6 cut(s) 350, 395, 819, 1069, 1459, 1543
CspCI CAANNNNNGTGG 6 cut(s) 1123, 1158, 1318, 1353, 1535, 1570
CviAII CATG 9 cut(s) 296, 304, 361, 548, 1056, 1160, 1538, 1558, 1730
CviJI RGCY 9 cut(s) 117, 206, 805, 866, 1090, 1196, 1530, 1628, 1649
CviKI_1 RGCY 9 cut(s) 117, 206, 805, 866, 1090, 1196, 1530, 1628, 1649
CviQI GTAC 6 cut(s) 350, 395, 819, 1069, 1459, 1543
DpnI GATC 8 cut(s) 441, 526, 571, 943, 1153, 1441, 1536, 1693
DpnII GATC 8 cut(s) 439, 524, 569, 941, 1151, 1439, 1534, 1691
DraIII CACNNNGTG 1 cut(s) 377
EaeI YGGCCR 1 cut(s) 1194
Eam1104I CTCTTC 4 cut(s) 62, 776, 1779, 1790
EarI CTCTTC 4 cut(s) 62, 776, 1779, 1790
EciI GGCGGA 1 cut(s) 169
Eco130I CCWWGG 1 cut(s) 936
Eco47I GGWCC 2 cut(s) 1448, 1572
Eco57I CTGAAG 1 cut(s) 983
EcoT14I CCWWGG 1 cut(s) 936
ErhI CCWWGG 1 cut(s) 936
FaeI CATG 9 cut(s) 299, 307, 364, 551, 1059, 1163, 1541, 1561, 1733
FalI AAGNNNNNCTT 4 cut(s) 853, 885, 1633, 1665
FaqI GGGAC 1 cut(s) 1434
FatI CATG 9 cut(s) 295, 303, 360, 547, 1055, 1159, 1537, 1557, 1729
FauNDI CATATG 1 cut(s) 1410
FbaI TGATCA 2 cut(s) 439, 1534
Fnu4HI GCNGC 4 cut(s) 115, 537, 671, 1012
FokI GGATG 9 cut(s) 206, 392, 710, 748, 866, 1029, 1141, 1368, 1514
Fsp4HI GCNGC 4 cut(s) 115, 537, 671, 1012
FspBI CTAG 4 cut(s) 374, 1128, 1205, 1775
FspI TGCGCA 1 cut(s) 423
GlaI GCGC 2 cut(s) 423, 1762
GluI GCNGC 4 cut(s) 115, 537, 671, 1012
GsuI CTGGAG 1 cut(s) 374
HaeIII GGCC 2 cut(s) 1196, 1628
HgaI GACGC 1 cut(s) 230
HhaI GCGC 2 cut(s) 424, 1763
Hin1II CATG 9 cut(s) 299, 307, 364, 551, 1059, 1163, 1541, 1561, 1733
Hin6I GCGC 2 cut(s) 422, 1761
HinP1I GCGC 2 cut(s) 422, 1761
HindIII AAGCTT 1 cut(s) 803
HphI GGTGA 3 cut(s) 389, 1235, 1370
Hpy166II GTNNAC 5 cut(s) 261, 395, 898, 988, 1340
Hpy188I TCNGA 9 cut(s) 316, 328, 410, 643, 853, 946, 1309, 1422, 1726
Hpy188III TCNNGA 3 cut(s) 431, 1437, 1775
Hpy8I GTNNAC 5 cut(s) 261, 395, 898, 988, 1340
HpyAV CCTTC 3 cut(s) 8, 380, 1682
HpyCH4III ACNGT 9 cut(s) 497, 510, 598, 704, 992, 1169, 1252, 1358, 1448
HpyCH4IV ACGT 1 cut(s) 322
HpyF10VI GCNNNNNNNGC 4 cut(s) 1011, 1017, 1608, 1646
HpySE526I ACGT 1 cut(s) 322
Hsp92II CATG 9 cut(s) 299, 307, 364, 551, 1059, 1163, 1541, 1561, 1733
HspAI GCGC 2 cut(s) 422, 1761
KpnI GGTACC 1 cut(s) 822
Ksp22I TGATCA 2 cut(s) 439, 1534
Kzo9I GATC 8 cut(s) 439, 524, 569, 941, 1151, 1439, 1534, 1691
LguI GCTCTTC 1 cut(s) 776
LmnI GCTCC 1 cut(s) 203
Lsp1109I GCAGC 3 cut(s) 126, 657, 998
LweI GCATC 4 cut(s) 307, 414, 1007, 1603
MaeI CTAG 4 cut(s) 374, 1128, 1205, 1775
MaeII ACGT 1 cut(s) 322
MaeIII GTNAC 3 cut(s) 186, 369, 598
MalI GATC 8 cut(s) 441, 526, 571, 943, 1153, 1441, 1536, 1693
MboI GATC 8 cut(s) 439, 524, 569, 941, 1151, 1439, 1534, 1691
MboII GAAGA 8 cut(s) 23, 79, 564, 763, 1256, 1322, 1796, 1807
MflI RGATCY 3 cut(s) 524, 569, 941
MhlI GDGCHC 3 cut(s) 263, 759, 990
MlsI TGGCCA 1 cut(s) 1196
MluCI AATT 7 cut(s) 91, 227, 679, 1270, 1277, 1323, 1620
MluNI TGGCCA 1 cut(s) 1196
MlyI GAGTC 4 cut(s) 15, 232, 377, 1195
MmeI TCCRAC 2 cut(s) 1198, 1324
Mox20I TGGCCA 1 cut(s) 1196
MroXI GAANNNNTTC 1 cut(s) 681
MscI TGGCCA 1 cut(s) 1196
MseI TTAA 2 cut(s) 456, 1623
MslI CAYNNNNRTG 2 cut(s) 474, 552
Msp20I TGGCCA 1 cut(s) 1196
Mva1269I GAATGC 1 cut(s) 65
MvnI CGCG 1 cut(s) 605
MwoI GCNNNNNNNGC 4 cut(s) 1011, 1017, 1608, 1646
NdeI CATATG 1 cut(s) 1410
NdeII GATC 8 cut(s) 439, 524, 569, 941, 1151, 1439, 1534, 1691
NlaIII CATG 9 cut(s) 299, 307, 364, 551, 1059, 1163, 1541, 1561, 1733
NlaIV GGNNCC 6 cut(s) 170, 252, 488, 820, 1450, 1563
NmuCI GTSAC 2 cut(s) 186, 369
NsbI TGCGCA 1 cut(s) 423
NspI RCATGY 2 cut(s) 364, 551
PaeI GCATGC 1 cut(s) 551
PaqCI CACCTGC 1 cut(s) 996
PciI ACATGT 1 cut(s) 360
PciSI GCTCTTC 1 cut(s) 776
PctI GAATGC 1 cut(s) 65
PdmI GAANNNNTTC 1 cut(s) 681
PfeI GAWTC 9 cut(s) 41, 74, 215, 461, 690, 1052, 1105, 1296, 1721
PkrI GCNGC 4 cut(s) 116, 538, 672, 1013
PleI GAGTC 4 cut(s) 14, 231, 376, 1195
PpsI GAGTC 4 cut(s) 14, 231, 376, 1195
PscI ACATGT 1 cut(s) 360
PshAI GACNNNNGTC 2 cut(s) 240, 717
PsiI TTATAA 3 cut(s) 147, 627, 725
PspN4I GGNNCC 6 cut(s) 170, 252, 488, 820, 1450, 1563
PspPI GGNCC 2 cut(s) 1448, 1572
PstNI CAGNNNCTG 1 cut(s) 1011
PsuI RGATCY 3 cut(s) 524, 569, 941
RsaI GTAC 6 cut(s) 351, 396, 820, 1070, 1460, 1544
RsaNI GTAC 6 cut(s) 350, 395, 819, 1069, 1459, 1543
RseI CAYNNNNRTG 2 cut(s) 474, 552
SapI GCTCTTC 1 cut(s) 776
SaqAI TTAA 2 cut(s) 456, 1623
SatI GCNGC 4 cut(s) 115, 537, 671, 1012
Sau3AI GATC 8 cut(s) 439, 524, 569, 941, 1151, 1439, 1534, 1691
Sau96I GGNCC 2 cut(s) 1448, 1572
SchI GAGTC 4 cut(s) 15, 232, 377, 1195
SduI GDGCHC 3 cut(s) 263, 759, 990
SfaNI GCATC 4 cut(s) 307, 414, 1007, 1603
SfcI CTRYAG 1 cut(s) 1236
SinI GGWCC 2 cut(s) 1448, 1572
SmiMI CAYNNNNRTG 2 cut(s) 474, 552
SmlI CTYRAG 1 cut(s) 730
SmoI CTYRAG 1 cut(s) 730
SphI GCATGC 1 cut(s) 551
Sse9I AATT 7 cut(s) 91, 227, 679, 1270, 1277, 1323, 1620
SsiI CCGC 4 cut(s) 154, 537, 603, 1014
SspMI CTAG 4 cut(s) 374, 1128, 1205, 1775
StyI CCWWGG 1 cut(s) 936
TaaI ACNGT 9 cut(s) 497, 510, 598, 704, 992, 1169, 1252, 1358, 1448
TaiI ACGT 1 cut(s) 325
TaqI TCGA 4 cut(s) 9, 221, 430, 1254
TasI AATT 7 cut(s) 91, 227, 679, 1270, 1277, 1323, 1620
TatI WGTACW 1 cut(s) 394
TauI GCSGC 1 cut(s) 539
TfiI GAWTC 9 cut(s) 41, 74, 215, 461, 690, 1052, 1105, 1296, 1721
Tru1I TTAA 2 cut(s) 456, 1623
Tru9I TTAA 2 cut(s) 456, 1623
TscAI CASTG 4 cut(s) 261, 341, 997, 1498
TseFI GTSAC 2 cut(s) 186, 369
TseI GCWGC 3 cut(s) 114, 670, 1011
Tsp45I GTSAC 2 cut(s) 186, 369
TspDTI ATGAA 9 cut(s) 320, 399, 752, 891, 923, 1044, 1701, 1797, 1808
TspGWI ACGGA 3 cut(s) 161, 337, 1585
TspRI CASTG 4 cut(s) 261, 341, 997, 1498
VneI GTGCAC 2 cut(s) 259, 986
VpaK11BI GGWCC 2 cut(s) 1448, 1572
XapI RAATTY 3 cut(s) 679, 1270, 1323
XbaI TCTAGA 1 cut(s) 1774
XceI RCATGY 2 cut(s) 364, 551
XmnI GAANNNNTTC 1 cut(s) 681
XspI CTAG 4 cut(s) 374, 1128, 1205, 1775
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.