Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0004069

Physical Location & Seq

Genomic Coordinates Forward (+)

16131608 .. 16135796

Gene Structure 4189 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g16250.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGCAGCGCGCTCCGGCAACGATCGAGGAACAGTTGTTACTGAAAGCAATCAAAGAAGAATGCCCGTGGGAGAGTCTCCCGAAACGGCTTCAAGTCACATTGTCTTCCAAAGAAGAATGGCACAGAAGGGTAATTGAGCATTGCATAAAGAAACGACTCCCATGGAACACTTGTTTTGCTCGGAAAGTGTGCAAAGAAAGTGAATATTATGAAGACATGATGCGGTACTTGCGAAGGAATTTAGCACTATTTCCCTATCACCTTGCGGAGTATGTTTGCCGTGTAATGAGGGTATCCCCTTTCAGATATTACTGCGATATGATTTTTGAAGTTATGAGAAATGAACAACCTTACGACAGCATCCCCAATTTTAGTGCTGCGGATGCCTTGCGCCTTACAGGGATAGGGAGAAACGAATTTATTGATATAATGAACAAGTGCAGATCTAAGAAAATTATGTGGAAGCTGAACAAGTCAATTGCAAAAGAACTTTTACCTACACAACCTGTGGATTTTACAATTGAACCGTGGTGGGGAATTTGTCTCGTGAATTTCACGCTGGAAGAATTTAAGAAACTCTCGGAGGAGGAAACGGCAACAATAGATAAAATATGTAAAGAGGAAGCAAATTCATATATTCTCTTCGATCGATCAGATATTATTAAAGGTCTTCACCAACGAGGATTAGTATACTTTGATGTCCCTGTATATCCTGATGACCGTTTTAAAGTTTCCAGGCTCGAAGGATTTGTTTCGAACAGGGAGCAATCTTATGAAGATCCTATAGAGGAGTTACTATATGCAGTTTTTGTTGTTTCAAGCGAGTATGCAACTGTTGCTGAACTGGCAACAACATTACAGGCTGACCTTTCACAGCTGCAGGCTGCTGCATCTTTTGCATGTCGATTGGGATGGGCGGTAAAATTATTTGATCGATCAGCATCTGTGCTTCAAGATACAAGTTTACCTCGATCTCCTAGAAACAGTCTCAGTGAAGAAGATACTTCTGGTCGTAGTACAAGCTCAGCAATTATGTTTGCCGATGGTGAAGCTAGTCTACAAGGAGATGTTTCGGGGACAGAAAACTCTTTGCATGATCGTGTTGCATTTGTTGTTGATGCTAACATAACATCCTATCTTATGATGGGGTCTGTCTCACCAGGTTTGTTTCTTCTTCTCAAGACCGAATTAGTTTATTATATTGAATACCATCAACTTCTGATCTGCAGTCTGAATTTTGCTGACATACTAGTCATGTGGTTGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAM91_C FAM91_N

Protein Analysis

423

Amino Acids

48.78

Weight (kDa)

5.43

Isoelectric Point (pI)

55.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35220 AT1G35220 AT1G35220 AT1G35220 AT1G35220 AT1G35220 AT1G35220
fragaria_vesca	FvH4_5g36450 FvH4_5g36450 FvH4_5g36450 FvH4_5g36450 FvH4_5g36450 FvH4_5g36450 FvH4_5g36450
malus_domestica	MD08G1188800.v1.1 MD15G1376600.v1.1 MD15G1376700.v1.1
prunus_persica	Prupe.1G523400_v2.0.a1
pyrus_communis	pycom08g16250
rosa_chinensis	RchiOBHm_Chr7g0238491
rosa_laevigata	RLG00000000910
rosa_multiflora	Rmu_sc0001536.1_g000012 Rmu_sc0025040.1_g000006
rosa_roxburghii	Rroxscaffold_3G00223010 Rroxscaffold_3G00223110
rosa_rugosa	Rorug07G0312600 Rorug07G0312700 Rorug07G0312800
rosa_samantha	Rh7AG467600 Rh7BG438300 Rh7CG485600 Rh7DG454100
rosa_wichuraiana	Rw7G038830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1250
AccI	GTMKAC	2 cut(s)	690, 1057
AccII	CGCG	1 cut(s)	9
AciI	CCGC	4 cut(s)	223, 266, 380, 917
AclWI	GGATC	1 cut(s)	773
AcsI	RAATTY	7 cut(s)	238, 416, 537, 550, 566, 628, 1234
AfaI	GTAC	2 cut(s)	227, 1018
AfiI	CCNNNNNNNGG	1 cut(s)	533
AgsI	TTSAA	7 cut(s)	92, 329, 524, 819, 953, 1205, 1264
AhlI	ACTAGT	1 cut(s)	1249
AjnI	CCWGG	2 cut(s)	734, 1159
AluBI	AGCT	4 cut(s)	466, 877, 1023, 1052
AluI	AGCT	4 cut(s)	466, 877, 1023, 1052
Alw26I	GTCTC	4 cut(s)	80, 548, 992, 1159
AlwI	GGATC	1 cut(s)	773
AlwNI	CAGNNNCTG	1 cut(s)	944
ApeKI	GCWGC	5 cut(s)	4, 377, 877, 884, 887
ApoI	RAATTY	7 cut(s)	238, 416, 537, 550, 566, 628, 1234
AspLEI	GCGC	3 cut(s)	9, 11, 393
AsuHPI	GGTGA	4 cut(s)	251, 665, 1058, 1149
AsuII	TTCGAA	1 cut(s)	755
BarI	GAAGNNNNNNTAC	2 cut(s)	1041, 1073
BauI	CACGAG	1 cut(s)	545
BbsI	GAAGAC	3 cut(s)	96, 219, 662
BbvI	GCAGC	5 cut(s)	16, 364, 864, 871, 874
BccI	CCATC	4 cut(s)	906, 1037, 1138, 1218
BceAI	ACGGC	3 cut(s)	101, 264, 609
BciT130I	CCWGG	2 cut(s)	736, 1161
BciVI	GTATCC	1 cut(s)	304
BcoDI	GTCTC	4 cut(s)	80, 548, 992, 1159
BcuI	ACTAGT	1 cut(s)	1249
BfaI	CTAG	3 cut(s)	978, 1053, 1250
BfmI	CTRYAG	3 cut(s)	783, 878, 1225
BfuI	GTATCC	1 cut(s)	304
BglII	AGATCT	1 cut(s)	443
BisI	GCNGC	5 cut(s)	5, 378, 878, 885, 888
BlpI	GCTNAGC	1 cut(s)	1024
BlsI	GCNGC	5 cut(s)	6, 379, 879, 886, 889
Bme1390I	CCNGG	2 cut(s)	736, 1161
BmrFI	CCNGG	2 cut(s)	736, 1161
BmsI	GCATC	6 cut(s)	210, 369, 373, 899, 950, 1108
BpiI	GAAGAC	3 cut(s)	96, 219, 662
Bpu1102I	GCTNAGC	1 cut(s)	1024
Bpu14I	TTCGAA	1 cut(s)	755
BpuEI	CTTGAG	1 cut(s)	1163
Bsa29I	ATCGAT	2 cut(s)	649, 934
BsaBI	GATNNNNATC	1 cut(s)	940
BsaJI	CCNNGG	3 cut(s)	65, 161, 527
Bsc4I	CCNNNNNNNGG	1 cut(s)	533
Bse1I	ACTGG	1 cut(s)	849
Bse3DI	GCAATG	1 cut(s)	139
Bse8I	GATNNNNATC	1 cut(s)	940
BseBI	CCWGG	2 cut(s)	736, 1161
BseCI	ATCGAT	2 cut(s)	649, 934
BseDI	CCNNGG	3 cut(s)	65, 161, 527
BseGI	GGATG	4 cut(s)	360, 388, 917, 1130
BseJI	GATNNNNATC	1 cut(s)	940
BseLI	CCNNNNNNNGG	1 cut(s)	533
BseMI	GCAATG	1 cut(s)	139
BseMII	CTCAG	2 cut(s)	1003, 1038
BseNI	ACTGG	1 cut(s)	849
BsePI	GCGCGC	1 cut(s)	7
BseRI	GAGGAG	2 cut(s)	599, 803
BseXI	GCAGC	5 cut(s)	16, 364, 864, 871, 874
BsgI	GTGCAG	1 cut(s)	460
Bsh1236I	CGCG	1 cut(s)	9
Bsh1285I	CGRYCG	2 cut(s)	24, 649
BshVI	ATCGAT	2 cut(s)	649, 934
BsiEI	CGRYCG	2 cut(s)	24, 649
BsiSI	CCGG	1 cut(s)	14
BslFI	GGGAC	2 cut(s)	686, 1090
BslI	CCNNNNNNNGG	1 cut(s)	533
BsmAI	GTCTC	4 cut(s)	80, 548, 992, 1159
BsmFI	GGGAC	2 cut(s)	686, 1090
BsmI	GAATGC	1 cut(s)	65
Bsp119I	TTCGAA	1 cut(s)	755
Bsp1720I	GCTNAGC	1 cut(s)	1024
Bsp19I	CCATGG	1 cut(s)	161
BspACI	CCGC	4 cut(s)	223, 266, 380, 917
BspCNI	CTCAG	2 cut(s)	1002, 1037
BspDI	ATCGAT	2 cut(s)	649, 934
BspFNI	CGCG	1 cut(s)	9
BspMAI	CTGCAG	2 cut(s)	882, 1229
BspPI	GGATC	1 cut(s)	773
BspT104I	TTCGAA	1 cut(s)	755
BsrDI	GCAATG	1 cut(s)	139
BsrI	ACTGG	1 cut(s)	849
BssECI	CCNNGG	3 cut(s)	65, 161, 527
BssHII	GCGCGC	1 cut(s)	7
BssNAI	GTATAC	1 cut(s)	691
BssSI	CACGAG	1 cut(s)	545
BssT1I	CCWWGG	1 cut(s)	161
Bst1107I	GTATAC	1 cut(s)	691
Bst2BI	CACGAG	1 cut(s)	545
Bst2UI	CCWGG	2 cut(s)	736, 1161
Bst4CI	ACNGT	5 cut(s)	33, 528, 722, 835, 986
Bst6I	CTCTTC	1 cut(s)	647
BstAPI	GCANNNNNTGC	2 cut(s)	836, 896
BstBI	TTCGAA	1 cut(s)	755
BstC8I	GCNNGC	2 cut(s)	9, 882
BstDEI	CTNAG	3 cut(s)	447, 989, 1024
BstDSI	CCRYGG	3 cut(s)	65, 161, 527
BstF5I	GGATG	4 cut(s)	360, 388, 917, 1130
BstFNI	CGCG	1 cut(s)	9
BstHHI	GCGC	3 cut(s)	9, 11, 393
BstMAI	GTCTC	4 cut(s)	80, 548, 992, 1159
BstMCI	CGRYCG	2 cut(s)	24, 649
BstMWI	GCNNNNNNNGC	5 cut(s)	229, 383, 836, 845, 896
BstNI	CCWGG	2 cut(s)	736, 1161
BstNSI	RCATGY	1 cut(s)	903
BstSCI	CCNGG	2 cut(s)	734, 1159
BstSFI	CTRYAG	3 cut(s)	783, 878, 1225
BstUI	CGCG	1 cut(s)	9
BstV1I	GCAGC	5 cut(s)	16, 364, 864, 871, 874
BstV2I	GAAGAC	3 cut(s)	96, 219, 662
BstX2I	RGATCY	2 cut(s)	443, 778
BstYI	RGATCY	2 cut(s)	443, 778
BstZ17I	GTATAC	1 cut(s)	691
Bsu15I	ATCGAT	2 cut(s)	649, 934
BsuI	GTATCC	1 cut(s)	304
BsuTUI	ATCGAT	2 cut(s)	649, 934
BtgI	CCRYGG	3 cut(s)	65, 161, 527
BtsCI	GGATG	4 cut(s)	360, 388, 917, 1130
BtsIMutI	CAGTG	1 cut(s)	997
Cac8I	GCNNGC	2 cut(s)	9, 882
CaiI	CAGNNNCTG	1 cut(s)	944
CfoI	GCGC	3 cut(s)	9, 11, 393
ClaI	ATCGAT	2 cut(s)	649, 934
CsiI	ACCWGGT	1 cut(s)	1159
Csp6I	GTAC	2 cut(s)	226, 1017
CviAII	CATG	5 cut(s)	162, 217, 900, 1094, 1255
CviJI	RGCY	8 cut(s)	88, 466, 739, 863, 877, 884, 1023, 1052
CviKI_1	RGCY	8 cut(s)	88, 466, 739, 863, 877, 884, 1023, 1052
CviQI	GTAC	2 cut(s)	226, 1017
DdeI	CTNAG	3 cut(s)	447, 989, 1024
DraI	TTTAAA	1 cut(s)	727
DrdI	GACNNNNNNGTC	1 cut(s)	1250
DseDI	GACNNNNNNGTC	1 cut(s)	1250
Eam1104I	CTCTTC	1 cut(s)	647
EarI	CTCTTC	1 cut(s)	647
Eco130I	CCWWGG	1 cut(s)	161
EcoRII	CCWGG	2 cut(s)	734, 1159
EcoT14I	CCWWGG	1 cut(s)	161
ErhI	CCWWGG	1 cut(s)	161
FaeI	CATG	5 cut(s)	165, 220, 903, 1097, 1258
FaqI	GGGAC	2 cut(s)	686, 1090
FatI	CATG	5 cut(s)	161, 216, 899, 1093, 1254
FblI	GTMKAC	2 cut(s)	690, 1057
Fnu4HI	GCNGC	5 cut(s)	5, 378, 878, 885, 888
FokI	GGATG	4 cut(s)	347, 395, 924, 1117
Fsp4HI	GCNGC	5 cut(s)	5, 378, 878, 885, 888
FspBI	CTAG	3 cut(s)	978, 1053, 1250
GlaI	GCGC	3 cut(s)	8, 10, 392
GluI	GCNGC	5 cut(s)	5, 378, 878, 885, 888
HapII	CCGG	1 cut(s)	14
HhaI	GCGC	3 cut(s)	9, 11, 393
Hin1II	CATG	5 cut(s)	165, 220, 903, 1097, 1258
Hin6I	GCGC	3 cut(s)	7, 9, 391
HinP1I	GCGC	3 cut(s)	7, 9, 391
HinfI	GANTC	2 cut(s)	73, 156
HpaII	CCGG	1 cut(s)	14
HphI	GGTGA	4 cut(s)	251, 665, 1058, 1149
Hpy166II	GTNNAC	3 cut(s)	691, 965, 1058
Hpy188I	TCNGA	6 cut(s)	183, 305, 583, 655, 1221, 1233
Hpy188III	TCNNGA	5 cut(s)	79, 547, 713, 953, 1180
Hpy8I	GTNNAC	3 cut(s)	691, 965, 1058
HpyAV	CCTTC	3 cut(s)	120, 228, 737
HpyCH4III	ACNGT	5 cut(s)	33, 528, 722, 835, 986
HpyF10VI	GCNNNNNNNGC	5 cut(s)	229, 383, 836, 845, 896
HpyF3I	CTNAG	3 cut(s)	447, 989, 1024
Hsp92II	CATG	5 cut(s)	165, 220, 903, 1097, 1258
HspAI	GCGC	3 cut(s)	7, 9, 391
LmnI	GCTCC	2 cut(s)	16, 763
Lsp1109I	GCAGC	5 cut(s)	16, 364, 864, 871, 874
LweI	GCATC	6 cut(s)	210, 369, 373, 899, 950, 1108
MabI	ACCWGGT	1 cut(s)	1159
MaeI	CTAG	3 cut(s)	978, 1053, 1250
MaeIII	GTNAC	3 cut(s)	36, 94, 792
MfeI	CAATTG	2 cut(s)	477, 519
MflI	RGATCY	2 cut(s)	443, 778
MlyI	GAGTC	2 cut(s)	82, 150
MnlI	CCTC	8 cut(s)	19, 282, 577, 580, 613, 674, 781, 978
MseI	TTAA	3 cut(s)	570, 663, 726
MslI	CAYNNNNRTG	1 cut(s)	1098
MspA1I	CMGCKG	1 cut(s)	877
MspI	CCGG	1 cut(s)	14
MspR9I	CCNGG	2 cut(s)	736, 1161
MunI	CAATTG	2 cut(s)	477, 519
Mva1269I	GAATGC	1 cut(s)	65
MvaI	CCWGG	2 cut(s)	736, 1161
MvnI	CGCG	1 cut(s)	9
MwoI	GCNNNNNNNGC	5 cut(s)	229, 383, 836, 845, 896
NcoI	CCATGG	1 cut(s)	161
NlaIII	CATG	5 cut(s)	165, 220, 903, 1097, 1258
NmuCI	GTSAC	1 cut(s)	94
NspI	RCATGY	1 cut(s)	903
NspV	TTCGAA	1 cut(s)	755
PauI	GCGCGC	1 cut(s)	7
PctI	GAATGC	1 cut(s)	65
PkrI	GCNGC	5 cut(s)	6, 379, 879, 886, 889
Ple19I	CGATCG	2 cut(s)	24, 649
PleI	GAGTC	2 cut(s)	81, 150
PpsI	GAGTC	2 cut(s)	81, 150
Psp6I	CCWGG	2 cut(s)	734, 1159
PspGI	CCWGG	2 cut(s)	734, 1159
PsrI	GAACNNNNNNTAC	2 cut(s)	21, 53
PstI	CTGCAG	2 cut(s)	882, 1229
PstNI	CAGNNNCTG	1 cut(s)	944
PsuI	RGATCY	2 cut(s)	443, 778
PteI	GCGCGC	1 cut(s)	7
PvuI	CGATCG	2 cut(s)	24, 649
PvuII	CAGCTG	1 cut(s)	877
RsaI	GTAC	2 cut(s)	227, 1018
RsaNI	GTAC	2 cut(s)	226, 1017
RseI	CAYNNNNRTG	1 cut(s)	1098
SaqAI	TTAA	3 cut(s)	570, 663, 726
SatI	GCNGC	5 cut(s)	5, 378, 878, 885, 888
SchI	GAGTC	2 cut(s)	82, 150
ScrFI	CCNGG	2 cut(s)	736, 1161
SexAI	ACCWGGT	1 cut(s)	1159
SfaNI	GCATC	6 cut(s)	210, 369, 373, 899, 950, 1108
SfcI	CTRYAG	3 cut(s)	783, 878, 1225
SfuI	TTCGAA	1 cut(s)	755
SmiMI	CAYNNNNRTG	1 cut(s)	1098
SmlI	CTYRAG	1 cut(s)	1178
SmoI	CTYRAG	1 cut(s)	1178
SpeI	ACTAGT	1 cut(s)	1249
SsiI	CCGC	4 cut(s)	223, 266, 380, 917
SspI	AATATT	1 cut(s)	206
SspMI	CTAG	3 cut(s)	978, 1053, 1250
StyD4I	CCNGG	2 cut(s)	734, 1159
StyI	CCWWGG	1 cut(s)	161
TaaI	ACNGT	5 cut(s)	33, 528, 722, 835, 986
TaqI	TCGA	8 cut(s)	24, 645, 649, 741, 755, 904, 934, 970
TaqII	GACCGA	1 cut(s)	1199
TatI	WGTACW	1 cut(s)	1016
Tru1I	TTAA	3 cut(s)	570, 663, 726
Tru9I	TTAA	3 cut(s)	570, 663, 726
TscAI	CASTG	1 cut(s)	997
TseFI	GTSAC	1 cut(s)	94
TseI	GCWGC	5 cut(s)	4, 377, 877, 884, 887
Tsp45I	GTSAC	1 cut(s)	94
TspDTI	ATGAA	5 cut(s)	225, 357, 446, 621, 789
TspRI	CASTG	1 cut(s)	997
XapI	RAATTY	7 cut(s)	238, 416, 537, 550, 566, 628, 1234
XceI	RCATGY	1 cut(s)	903
XmiI	GTMKAC	2 cut(s)	690, 1057
XspI	CTAG	3 cut(s)	978, 1053, 1250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.