Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0003586

Physical Location & Seq

Genomic Coordinates Forward (+)

31361023 .. 31365221

Gene Structure 4199 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0312600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1569 bp

ATGGGTTGCCTTTCCCAGAGGTTTCAACATTCAAAGACTGGTGCTTTTGTTCAAATCAATCAACCGTCTTCAAAAAAAATGGAGGAGAGGGATATGGGGTTAAAGATTGATATGAACAAAGCTTACGATTGTATTGAGTGGGATTTTCTTCAAGCTGTTATGCTTAAGATGGGATTTGCTGCAAGTTGGGTTAACTTGATAATGAAATGCTTGAATACAGTTTCATTCTCTGTTTTACTAAATGGAAAACCAGGGCCTACTTTCTCTCCTTCACGGGGCTGGAGGCAGGGGGATCCTTTGTCCCCGTACTTATTCATTTTGGTCGCCGAAGTTTTAACTGCAATGATTAATAGGGCTTGCTTGAATCACTCCCCAGTTGGTGTTCAAATGGGTGCAGAAGGTCCCTCGATTTCACATCTATTGTTTGCTAAAAAAATTCAAGGTTGGAAACAGTTGAATCTCAACCAGGCTGGGAAAGAAATTCTTGTGAAATCGGTCATTTCGGCTATCCCTGCTTATCCTATGGCAGTATTTCTATTCACTGATGGGCTGTGTAAGGAGATTGATTCTCTAATTGCGAACTTTTGGTGGGGACAGACTGATATGGGGGGTAAGGTGCATTGGTTGAGTTGGGAAAAGCTTGGATTGCCTAAGGAGGAGGGCGGTATGGGTTTCAGGTGTCTGCGAGATTTCAATTTAGCCCTCCTTGCCAAAGTAGGGTGGAGAATTATTCAACAACCAGAAGCTTTATGGGTTCAAGTGCTCAAGGGATTATATTTTCCTGATTGTGATTTCTTGTCAGCTTCTAAAGGCCCCAGAGCTTCGTGGGCTTGGAGTAGCATTCTGGAGGGAAGAAATTTATTAACTGATTGTGCTTTGTGGCAAGTACTCAATGGGGAGTCCATTAGTACTTGGAAAGATAAATGGATTCCAGGGATTTTGGGTGGGAGACTGCGTGCTGCTCATCTGTATGCTTCTGAGTTTGATCCTTTTCAGAGGGTTGCAGACTTGGTTGATTGGTCTTCAACTTCTTGGAATCTGGATCCCATTGCTCAGCATTTGACACCTGCTGTGGTTGTTGCTATTGAGTCCATCCCATTGTCCTCTACTTGGGAACCTGATAAGTTAGTCTGGCCTTTTGAGAAATGTGGTTCATATTCAGTCAGGTCTGGGTATCATGTGCAGCATGGAGGGAGAAGTAAGGCATCATTGCAATCAGCTCACTCTTCACATATTGTTGCTCCTATAGTTTGGAAACAATTGTGGAACGTTTCTTCTACCCCTAAAGTCAAGCATTTTCTTTGGAGGGCTTGTACTAATGCACTTCCAACTATGGCTAATCTTTTTATTAAAAAGGTGACCCCCTCTCCTCTTTGTCCGTTTTGTTCGGATCATATGGAAACTATTGAGCATTTGTTACTTCAATGTCCATGGACCATAGGAGTGTGGTTTGGTTTGCCTGTTAATTACAAGGTGGATCTAGCAGCTATTCATAATAGCACATTATGTGTACATCCATATATAGACTTTTGCTCTTCTATCATCTCACCTACCATGTTGCTACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAM91_C FAM91_N

Protein Analysis

522

Amino Acids

58.43

Weight (kDa)

8.62

Isoelectric Point (pI)

41.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_1	PF00078	23 - 127	1.9e-09	Reverse transcriptase (RNA-dependent DNA polymerase)
zf-RVT	PF13966	386 - 483	1.5e-17	zinc-binding in reverse transcriptase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003586)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09020
fragaria_vesca	FvH4_5g36440 FvH4_5g36440 FvH4_5g36440 FvH4_5g36440 FvH4_5g36440 FvH4_5g36440 FvH4_5g36440 FvH4_5g36440 FvH4_5g36440 FvH4_5g36440 FvH4_5g36440 FvH4_5g36440 FvH4_5g36440 FvH4_5g36440 FvH4_5g36440 FvH4_5g36440 FvH4_5g36440 FvH4_5g36440
malus_domestica	MD08G1188900.v1.1 MD15G1376800.v1.1
prunus_persica	Prupe.1G523500_v2.0.a1 Prupe.1G523500_v2.0.a1
pyrus_communis	pycom08g16260 pycom15g33660
rosa_chinensis	RchiOBHm_Chr7g0238421
rosa_laevigata	RLG00000000911
rosa_multiflora	Rmu_sc0031277.1_g000001
rosa_roxburghii	Rroxscaffold_3G00223020
rosa_rugosa	Rorug07G0312600
rosa_samantha	Rh7AG467500 Rh7BG438200 Rh7CG485500 Rh7DG454000
rosa_wichuraiana	Rw7G038820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1075
Acc36I	ACCTGC	1 cut(s)	1075
AciI	CCGC	1 cut(s)	663
AclI	AACGTT	1 cut(s)	1269
AclWI	GGATC	7 cut(s)	287, 300, 980, 1037, 1050, 1398, 1485
AcsI	RAATTY	3 cut(s)	435, 480, 856
AfaI	GTAC	5 cut(s)	308, 888, 910, 1315, 1512
AfiI	CCNNNNNNNGG	3 cut(s)	275, 717, 1110
AflII	CTTAAG	1 cut(s)	164
AjnI	CCWGG	3 cut(s)	250, 465, 931
AluBI	AGCT	8 cut(s)	122, 155, 640, 746, 803, 821, 1220, 1487
AluI	AGCT	8 cut(s)	122, 155, 640, 746, 803, 821, 1220, 1487
Alw21I	GWGCWC	1 cut(s)	765
Alw26I	GTCTC	1 cut(s)	943
AlwI	GGATC	7 cut(s)	287, 300, 980, 1037, 1050, 1398, 1485
AoxI	GGCC	3 cut(s)	254, 811, 1133
ApeKI	GCWGC	4 cut(s)	179, 959, 1183, 1484
ApoI	RAATTY	3 cut(s)	435, 480, 856
AseI	ATTAAT	1 cut(s)	348
AspS9I	GGNCC	4 cut(s)	254, 401, 812, 1434
AsuHPI	GGTGA	2 cut(s)	1369, 1539
AvaII	GGWCC	2 cut(s)	401, 1434
AxyI	CCTNAGG	1 cut(s)	651
BamHI	GGATCC	2 cut(s)	292, 1042
BbsI	GAAGAC	2 cut(s)	60, 1014
Bbv12I	GWGCWC	1 cut(s)	765
BbvI	GCAGC	4 cut(s)	166, 946, 1195, 1496
BccI	CCATC	3 cut(s)	163, 539, 1100
BciT130I	CCWGG	3 cut(s)	252, 467, 933
BcoDI	GTCTC	1 cut(s)	943
BfaI	CTAG	1 cut(s)	1481
BfmI	CTRYAG	1 cut(s)	1245
BfrI	CTTAAG	1 cut(s)	164
BfuAI	ACCTGC	1 cut(s)	1075
BisI	GCNGC	4 cut(s)	180, 960, 1184, 1485
BlpI	GCTNAGC	1 cut(s)	1053
BlsI	GCNGC	4 cut(s)	181, 961, 1185, 1486
BmcAI	AGTACT	2 cut(s)	888, 910
Bme1390I	CCNGG	3 cut(s)	252, 467, 933
Bme18I	GGWCC	2 cut(s)	401, 1434
BmgT120I	GGNCC	4 cut(s)	254, 401, 812, 1434
BmiI	GGNNCC	5 cut(s)	294, 403, 814, 1044, 1116
BmrFI	CCNGG	3 cut(s)	252, 467, 933
BmrI	ACTGGG	1 cut(s)	368
BmsI	GCATC	1 cut(s)	1214
BmuI	ACTGGG	1 cut(s)	368
BpiI	GAAGAC	2 cut(s)	60, 1014
BpmI	CTGGAG	2 cut(s)	301, 866
Bpu1102I	GCTNAGC	1 cut(s)	1053
BpuEI	CTTGAG	1 cut(s)	749
BsaJI	CCNNGG	3 cut(s)	251, 932, 1430
BsaXI	ACNNNNNCTCC	8 cut(s)	250, 280, 940, 970, 1297, 1327, 1351, 1381
Bsc4I	CCNNNNNNNGG	3 cut(s)	275, 717, 1110
Bse1I	ACTGG	2 cut(s)	43, 374
Bse21I	CCTNAGG	1 cut(s)	651
Bse3DI	GCAATG	3 cut(s)	348, 1047, 1208
BseBI	CCWGG	3 cut(s)	252, 467, 933
BseDI	CCNNGG	3 cut(s)	251, 932, 1430
BseGI	GGATG	2 cut(s)	1092, 1513
BseLI	CCNNNNNNNGG	3 cut(s)	275, 717, 1110
BseMI	GCAATG	3 cut(s)	348, 1047, 1208
BseMII	CTCAG	2 cut(s)	969, 1067
BseNI	ACTGG	2 cut(s)	43, 374
BseRI	GAGGAG	3 cut(s)	98, 671, 1359
BseXI	GCAGC	4 cut(s)	166, 946, 1195, 1496
BseYI	CCCAGC	1 cut(s)	470
BsgI	GTGCAG	2 cut(s)	414, 1202
BshFI	GGCC	3 cut(s)	256, 813, 1135
BsiHKAI	GWGCWC	1 cut(s)	765
BslFI	GGGAC	3 cut(s)	286, 387, 606
BslI	CCNNNNNNNGG	3 cut(s)	275, 717, 1110
BsmAI	GTCTC	1 cut(s)	943
BsmFI	GGGAC	3 cut(s)	286, 387, 606
BsmI	GAATGC	1 cut(s)	840
BsnI	GGCC	3 cut(s)	256, 813, 1135
Bsp1286I	GDGCHC	1 cut(s)	765
Bsp1407I	TGTACA	1 cut(s)	1510
Bsp143I	GATC	5 cut(s)	292, 985, 1042, 1390, 1477
Bsp1720I	GCTNAGC	1 cut(s)	1053
Bsp19I	CCATGG	1 cut(s)	1430
BspACI	CCGC	1 cut(s)	663
BspANI	GGCC	3 cut(s)	256, 813, 1135
BspCNI	CTCAG	2 cut(s)	970, 1066
BspLI	GGNNCC	5 cut(s)	294, 403, 814, 1044, 1116
BspMI	ACCTGC	1 cut(s)	1075
BspPI	GGATC	7 cut(s)	287, 300, 980, 1037, 1050, 1398, 1485
BspQI	GCTCTTC	1 cut(s)	1540
BspTI	CTTAAG	1 cut(s)	164
BsrDI	GCAATG	3 cut(s)	348, 1047, 1208
BsrGI	TGTACA	1 cut(s)	1510
BsrI	ACTGG	2 cut(s)	43, 374
BssECI	CCNNGG	3 cut(s)	251, 932, 1430
BssMI	GATC	5 cut(s)	292, 985, 1042, 1390, 1477
BssT1I	CCWWGG	1 cut(s)	1430
Bst2UI	CCWGG	3 cut(s)	252, 467, 933
Bst4CI	ACNGT	3 cut(s)	66, 220, 453
Bst6I	CTCTTC	2 cut(s)	1231, 1540
BstAFI	CTTAAG	1 cut(s)	164
BstAUI	TGTACA	1 cut(s)	1510
BstC8I	GCNNGC	2 cut(s)	358, 957
BstDEI	CTNAG	3 cut(s)	651, 978, 1053
BstDSI	CCRYGG	1 cut(s)	1430
BstEII	GGTNACC	1 cut(s)	1357
BstF5I	GGATG	2 cut(s)	1092, 1513
BstKTI	GATC	5 cut(s)	295, 988, 1045, 1393, 1480
BstMAI	GTCTC	1 cut(s)	943
BstMBI	GATC	5 cut(s)	292, 985, 1042, 1390, 1477
BstMWI	GCNNNNNNNGC	4 cut(s)	512, 646, 707, 827
BstNI	CCWGG	3 cut(s)	252, 467, 933
BstPI	GGTNACC	1 cut(s)	1357
BstSCI	CCNGG	3 cut(s)	250, 465, 931
BstSFI	CTRYAG	1 cut(s)	1245
BstV1I	GCAGC	4 cut(s)	166, 946, 1195, 1496
BstV2I	GAAGAC	2 cut(s)	60, 1014
BstX2I	RGATCY	3 cut(s)	292, 1042, 1477
BstYI	RGATCY	3 cut(s)	292, 1042, 1477
Bsu36I	CCTNAGG	1 cut(s)	651
BsuRI	GGCC	3 cut(s)	256, 813, 1135
BtgI	CCRYGG	1 cut(s)	1430
BtsCI	GGATG	2 cut(s)	1092, 1513
BtsIMutI	CAGTG	1 cut(s)	540
BveI	ACCTGC	1 cut(s)	1075
Cac8I	GCNNGC	2 cut(s)	358, 957
Cfr13I	GGNCC	4 cut(s)	254, 401, 812, 1434
Csp6I	GTAC	5 cut(s)	307, 887, 909, 1314, 1511
CviAII	CATG	4 cut(s)	1178, 1187, 1431, 1555
CviQI	GTAC	5 cut(s)	307, 887, 909, 1314, 1511
DdeI	CTNAG	3 cut(s)	651, 978, 1053
DpnI	GATC	5 cut(s)	294, 987, 1044, 1392, 1479
DpnII	GATC	5 cut(s)	292, 985, 1042, 1390, 1477
Eam1104I	CTCTTC	2 cut(s)	1231, 1540
EarI	CTCTTC	2 cut(s)	1231, 1540
Eco130I	CCWWGG	1 cut(s)	1430
Eco47I	GGWCC	2 cut(s)	401, 1434
Eco81I	CCTNAGG	1 cut(s)	651
Eco91I	GGTNACC	1 cut(s)	1357
EcoO109I	RGGNCCY	3 cut(s)	254, 401, 812
EcoO65I	GGTNACC	1 cut(s)	1357
EcoRII	CCWGG	3 cut(s)	250, 465, 931
EcoT14I	CCWWGG	1 cut(s)	1430
ErhI	CCWWGG	1 cut(s)	1430
FaeI	CATG	4 cut(s)	1181, 1190, 1434, 1558
FalI	AAGNNNNNCTT	2 cut(s)	468, 500
FaqI	GGGAC	3 cut(s)	286, 387, 606
FatI	CATG	4 cut(s)	1177, 1186, 1430, 1554
FauNDI	CATATG	1 cut(s)	1395
Fnu4HI	GCNGC	4 cut(s)	180, 960, 1184, 1485
FokI	GGATG	2 cut(s)	1079, 1500
Fsp4HI	GCNGC	4 cut(s)	180, 960, 1184, 1485
FspBI	CTAG	1 cut(s)	1481
GluI	GCNGC	4 cut(s)	180, 960, 1184, 1485
GsaI	CCCAGC	1 cut(s)	474
GsuI	CTGGAG	2 cut(s)	301, 866
HaeIII	GGCC	3 cut(s)	256, 813, 1135
Hin1II	CATG	4 cut(s)	1181, 1190, 1434, 1558
HincII	GTYRAC	1 cut(s)	193
HindII	GTYRAC	1 cut(s)	193
HindIII	AAGCTT	3 cut(s)	120, 638, 744
HinfI	GANTC	7 cut(s)	364, 457, 566, 899, 928, 1036, 1088
HpaI	GTTAAC	1 cut(s)	193
HphI	GGTGA	2 cut(s)	1369, 1539
Hpy166II	GTNNAC	2 cut(s)	193, 1511
Hpy188I	TCNGA	3 cut(s)	979, 996, 1390
Hpy188III	TCNNGA	3 cut(s)	782, 845, 1040
Hpy8I	GTNNAC	2 cut(s)	193, 1511
HpyAV	CCTTC	2 cut(s)	279, 392
HpyCH4III	ACNGT	3 cut(s)	66, 220, 453
HpyCH4IV	ACGT	1 cut(s)	1269
HpyCH4V	TGCA	8 cut(s)	182, 341, 395, 619, 1004, 1183, 1213, 1322
HpyF10VI	GCNNNNNNNGC	4 cut(s)	512, 646, 707, 827
HpyF3I	CTNAG	3 cut(s)	651, 978, 1053
HpySE526I	ACGT	1 cut(s)	1269
Hsp92II	CATG	4 cut(s)	1181, 1190, 1434, 1558
KspAI	GTTAAC	1 cut(s)	193
Kzo9I	GATC	5 cut(s)	292, 985, 1042, 1390, 1477
LguI	GCTCTTC	1 cut(s)	1540
LmnI	GCTCC	1 cut(s)	1246
Lsp1109I	GCAGC	4 cut(s)	166, 946, 1195, 1496
LweI	GCATC	1 cut(s)	1214
MaeI	CTAG	1 cut(s)	1481
MaeII	ACGT	1 cut(s)	1269
MaeIII	GTNAC	2 cut(s)	1357, 1416
MalI	GATC	5 cut(s)	294, 987, 1044, 1392, 1479
MboI	GATC	5 cut(s)	292, 985, 1042, 1390, 1477
MboII	GAAGA	7 cut(s)	60, 140, 864, 1014, 1218, 1266, 1527
MfeI	CAATTG	1 cut(s)	1259
MflI	RGATCY	3 cut(s)	292, 1042, 1477
MhlI	GDGCHC	1 cut(s)	765
MluCI	AATT	8 cut(s)	435, 480, 573, 694, 726, 856, 1259, 1465
MlyI	GAGTC	2 cut(s)	908, 1097
MmeI	TCCRAC	2 cut(s)	425, 1352
MseI	TTAA	9 cut(s)	101, 165, 192, 335, 348, 863, 1350, 1464, 1567
MslI	CAYNNNNRTG	2 cut(s)	969, 1442
MspCI	CTTAAG	1 cut(s)	164
MspR9I	CCNGG	3 cut(s)	252, 467, 933
MunI	CAATTG	1 cut(s)	1259
Mva1269I	GAATGC	1 cut(s)	840
MvaI	CCWGG	3 cut(s)	252, 467, 933
MwoI	GCNNNNNNNGC	4 cut(s)	512, 646, 707, 827
NcoI	CCATGG	1 cut(s)	1430
NdeI	CATATG	1 cut(s)	1395
NdeII	GATC	5 cut(s)	292, 985, 1042, 1390, 1477
NlaIII	CATG	4 cut(s)	1181, 1190, 1434, 1558
NlaIV	GGNNCC	5 cut(s)	294, 403, 814, 1044, 1116
NmuCI	GTSAC	1 cut(s)	1357
PaqCI	CACCTGC	1 cut(s)	1075
PciSI	GCTCTTC	1 cut(s)	1540
PctI	GAATGC	1 cut(s)	840
PfeI	GAWTC	5 cut(s)	364, 457, 566, 928, 1036
PkrI	GCNGC	4 cut(s)	181, 961, 1185, 1486
PleI	GAGTC	2 cut(s)	907, 1096
PpsI	GAGTC	2 cut(s)	907, 1096
PpuMI	RGGWCCY	1 cut(s)	401
PshBI	ATTAAT	1 cut(s)	348
Psp1406I	AACGTT	1 cut(s)	1269
Psp5II	RGGWCCY	1 cut(s)	401
Psp6I	CCWGG	3 cut(s)	250, 465, 931
PspEI	GGTNACC	1 cut(s)	1357
PspFI	CCCAGC	1 cut(s)	470
PspGI	CCWGG	3 cut(s)	250, 465, 931
PspN4I	GGNNCC	5 cut(s)	294, 403, 814, 1044, 1116
PspPI	GGNCC	4 cut(s)	254, 401, 812, 1434
PspPPI	RGGWCCY	1 cut(s)	401
PsrI	GAACNNNNNNTAC	2 cut(s)	107, 139
PsuI	RGATCY	3 cut(s)	292, 1042, 1477
RsaI	GTAC	5 cut(s)	308, 888, 910, 1315, 1512
RsaNI	GTAC	5 cut(s)	307, 887, 909, 1314, 1511
RseI	CAYNNNNRTG	2 cut(s)	969, 1442
SapI	GCTCTTC	1 cut(s)	1540
SaqAI	TTAA	9 cut(s)	101, 165, 192, 335, 348, 863, 1350, 1464, 1567
SatI	GCNGC	4 cut(s)	180, 960, 1184, 1485
Sau3AI	GATC	5 cut(s)	292, 985, 1042, 1390, 1477
Sau96I	GGNCC	4 cut(s)	254, 401, 812, 1434
ScaI	AGTACT	2 cut(s)	888, 910
SchI	GAGTC	2 cut(s)	908, 1097
ScrFI	CCNGG	3 cut(s)	252, 467, 933
SduI	GDGCHC	1 cut(s)	765
SfaNI	GCATC	1 cut(s)	1214
SfcI	CTRYAG	1 cut(s)	1245
SinI	GGWCC	2 cut(s)	401, 1434
SmiMI	CAYNNNNRTG	2 cut(s)	969, 1442
SmlI	CTYRAG	2 cut(s)	164, 764
SmoI	CTYRAG	2 cut(s)	164, 764
Sse9I	AATT	8 cut(s)	435, 480, 573, 694, 726, 856, 1259, 1465
SsiI	CCGC	1 cut(s)	663
SspMI	CTAG	1 cut(s)	1481
StyD4I	CCNGG	3 cut(s)	250, 465, 931
StyI	CCWWGG	1 cut(s)	1430
TaaI	ACNGT	3 cut(s)	66, 220, 453
TaiI	ACGT	1 cut(s)	1272
TaqI	TCGA	1 cut(s)	407
TaqII	GACCGA	1 cut(s)	484
TasI	AATT	8 cut(s)	435, 480, 573, 694, 726, 856, 1259, 1465
TatI	WGTACW	4 cut(s)	886, 908, 1313, 1510
TfiI	GAWTC	5 cut(s)	364, 457, 566, 928, 1036
Tru1I	TTAA	9 cut(s)	101, 165, 192, 335, 348, 863, 1350, 1464, 1567
Tru9I	TTAA	9 cut(s)	101, 165, 192, 335, 348, 863, 1350, 1464, 1567
TscAI	CASTG	1 cut(s)	547
TseFI	GTSAC	1 cut(s)	1357
TseI	GCWGC	4 cut(s)	179, 959, 1183, 1484
Tsp45I	GTSAC	1 cut(s)	1357
TspDTI	ATGAA	6 cut(s)	128, 213, 218, 304, 1143, 1481
TspGWI	ACGGA	1 cut(s)	1368
TspRI	CASTG	1 cut(s)	547
Vha464I	CTTAAG	1 cut(s)	164
VpaK11BI	GGWCC	2 cut(s)	401, 1434
VspI	ATTAAT	1 cut(s)	348
XapI	RAATTY	3 cut(s)	435, 480, 856
XcmI	CCANNNNNNNNNTGG	1 cut(s)	747
XspI	CTAG	1 cut(s)	1481
ZrmI	AGTACT	2 cut(s)	888, 910

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.