Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0003586

Physical Location & Seq

Genomic Coordinates Reverse (-)

59384542 .. 59397617

Gene Structure 13076 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G038820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2400 bp

ATGAAACTGTGCCATTATCAACATCATCATAATCAGAATAGCAATCGAGAAAGATCAAAGATGCTCCTGCGTACCCCACATTTGTACGATTCAAATGTCTCCAAATTCCCGCTCTTTGCATCATCATCACCATTTTCGACAACTCAGGCCGGTGCTTCCCCGTGTATAGTAGCTTCCCCTGTTCTTGATGTTGGGTTGAAGTTGAGTAAACAAGCGACGGGCAGCAATCAGCAAGGGCTTGTGAGAAAGACCCGGGATCATGTCATGCATAGCACGGGTAATGCGTACGGTCAGGGTGCTCAGGGAAGTGTGCTAGAGGAAGAAGCCCAACTGGCAGAGACCAGCCAGTCATGGAAAACTTTTCCAGGTCAGGCTTTTCCGCTGGGTGTATCAGAGGTTGATACTGGTGTCAATTTTGCCATTTTCTCACAGCACGCAACCGCCGTCACACTTTGCATTAAACTTGAAGAGAGGGGACAGTTTGGAGGGCCAGATGGTGGAATGACTGAGCTGGCTTTGGATCCTAAAGAGAACAAGACAGGCGACATTTGGCACATATGTATAAAGGATTTTCCCCGTAGCAATGTCCTTTATGGTTACCGTATTGATGGACCTCAAGGTTGGCAGCAAGGGCATCGGTTTGACAGCAGCATTGTACTAATAGATCCTTATGCGAAGCTAGTTGAAGGCCGCCGGTATTTTGGAGATTCCAGAGAAAAGTTATCTGGGTTTCTTGGTACTTATGATTTTGATAGCTTGCCTTTTGATTGGGGAGACAACTACAAGCTTCCAAATATACCCGAGAATGATCTTGTTATATATGAAATGAATGTTCGTGCATTTACAGCTGATGAATCCAGTGGTCTGGATCCAGATGTTCGTGGTAGCTACCGTGGTCTGATTGACAAGATTCCACACCTTCTAGAGCTCGGCATCAATGCTGTAGAGTTGCTGCCTGTCTTTGAATTTGATGAGTTTGAGTTTCAAAGGCGTTCAAATCCTAGAGATCACATGATTAATACGTGGGGCTACTCAACAATAAACTTCTTTGCCCCTATGAGCCGTTATGCGAGTGCTGGTGGAGGACCCCTGAAAGCTTCCCATGAATTTAAAGAAATGGTTAAAGCTTTGCATGGTGCTGGGATAGAGGTCATTTTGGATGTTGTCTATAACCATACAAATGAAGCTGATGATGCCTACCCTTATACCACTTCATTTCGTGGCATAGATAATAAGGTTTATTACATGCTGGACCCAAACAATGGCCAATTACTGAACTTCTCGGGCTGTGGGAACACATTTAACTGTAACCATCCTGTTGTTATGGAGCTCGTTCTCGAGAGCTTAAGACACTGGGTCACTGAATATCATGTGGATGGATTTAGATTTGACCTTGCTAGTGCTCTTTGTCGGGGAGCAGATGGAGCTCCACTTGATGCACCGCCACTTATCCGGGCTATCGCAAAGGATGCCATTCTATCAAGATGTAAAGTTATTTCTGAGCCTTGGGATTGTGGAGGCCTTTATCTTGTTGGAAGATTTCCAAACTGGGACAGGTGGGCTGAATGGAATGGAATATATCGTGACGACTTGAGGAGATTTATAAAGGGAGACTCAGGTATGAAAGGAAGTTTTGCAACTCGTGTTTCTGGATCTGCTGACCTTTACAAAACGAATAAGCGCAAGCCTTATCACAGTATTAATTTTATTATTGCACATGATGGGTTCACACTATATGATCTCGTTTCATACAATTTCAAGCACAATGATGCTAACGGAGAAGGAGGAAATGATGGTAGTAATGATAATCTGAGCTGGAATTGTGGTCATGAAGGAGAAACCGATGATTCTACTGTTAAAGCTATACGCTCCCGGCAAATGAAAAACTTCCATCTGGCGTTGATGATCTCTCAGGGAACACCAATGATGCTGATGGGAGATGAATATGGGCATACTCGATATGGAAATAACAACAGTTATGGACATGATACTGCTATTAACCATTTCCAGTGGGGACTGTTGGAATCACGGAAGAATAATCACTTCAGGTTTTTCAAAGAGGTGATAAACTATCGAAGAACACATCGTGTATTTGGCCGTGATAGTTTTCTTGAGAAAAGTGATGTGACATGGCATGAAGGCAACTGGGACAATCATGAGAGCAAGTTTCTTGCATTTACGTTTCATGACAATAATGGAGGAGACATCTACATGGCATTCAATGCTCATGATTATTTTATTGAAGTTCCGATCCCCTCACCACCAGAAAAGAGGATTTGGTTTCGTGTGGTCGACACTAATCTCGAGTCTCCCAATGACTTTGTGCTTGAAGGCGTCCCAGGCGTTAGAGGCACTTACAACATGGCCCCTTACTCCTCAATTCTTCTTGAAGCAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004133 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005977 GO:0005982 GO:0005983 GO:0006073 GO:0006091 GO:0006112 GO:0006996 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009501 GO:0009507 GO:0009532 GO:0009536 GO:0009569 GO:0009570 GO:0009657 GO:0009660 GO:0009987 GO:0015980 GO:0016043 GO:0016052 GO:0016787 GO:0016798 GO:0019156 GO:0043036 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0071840 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 ko01110 map00500 map01100 map01110

Pfam Domains

Protein Families

Alpha-amylase CBM_48

Protein Analysis

799

Amino Acids

90.24

Weight (kDa)

5.88

Isoelectric Point (pI)

33.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBM_48	PF02922	127 - 225	1.3e-11	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
Alpha-amylase	PF00128	290 - 470	2.4e-11	Alpha amylase, catalytic domain
ISOA1-3_C	PF21156	713 - 778	7.3e-12	Isoamylase 1-3, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003586)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09020
fragaria_vesca	FvH4_5g36440 FvH4_5g36440 FvH4_5g36440 FvH4_5g36440 FvH4_5g36440 FvH4_5g36440 FvH4_5g36440 FvH4_5g36440 FvH4_5g36440 FvH4_5g36440 FvH4_5g36440 FvH4_5g36440 FvH4_5g36440 FvH4_5g36440 FvH4_5g36440 FvH4_5g36440 FvH4_5g36440 FvH4_5g36440
malus_domestica	MD08G1188900.v1.1 MD15G1376800.v1.1
prunus_persica	Prupe.1G523500_v2.0.a1 Prupe.1G523500_v2.0.a1
pyrus_communis	pycom08g16260 pycom15g33660
rosa_chinensis	RchiOBHm_Chr7g0238421
rosa_laevigata	RLG00000000911
rosa_multiflora	Rmu_sc0031277.1_g000001
rosa_roxburghii	Rroxscaffold_3G00223020
rosa_rugosa	Rorug07G0312600
rosa_samantha	Rh7AG467500 Rh7BG438200 Rh7CG485500 Rh7DG454000
rosa_wichuraiana	Rw7G038820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1604
AasI	GACNNNNNNGTC	1 cut(s)	346
AccB7I	CCANNNNNTGG	2 cut(s)	497, 1262
AccBSI	CCGCTC	1 cut(s)	112
AccI	GTMKAC	1 cut(s)	2292
AciI	CCGC	5 cut(s)	110, 380, 441, 691, 1442
AclWI	GGATC	8 cut(s)	264, 515, 528, 659, 863, 876, 1660, 2245
AcoI	YGGCCR	2 cut(s)	1264, 2095
AcsI	RAATTY	3 cut(s)	104, 965, 1106
AcuI	CTGAAG	1 cut(s)	2029
AcyI	GRCGYC	1 cut(s)	2334
AdeI	CACNNNGTG	1 cut(s)	2087
AfaI	GTAC	5 cut(s)	73, 86, 287, 657, 739
AfiI	CCNNNNNNNGG	2 cut(s)	497, 1262
AflII	CTTAAG	1 cut(s)	1345
AhdI	GACNNNNNGTC	1 cut(s)	1355
AjnI	CCWGG	2 cut(s)	364, 2338
Alw21I	GWGCWC	5 cut(s)	301, 930, 1332, 1405, 1429
Alw26I	GTCTC	6 cut(s)	103, 332, 768, 1605, 2196, 2313
AlwI	GGATC	8 cut(s)	264, 515, 528, 659, 863, 876, 1660, 2245
Ama87I	CYCGRG	5 cut(s)	252, 800, 1282, 1337, 2303
AoxI	GGCC	7 cut(s)	147, 488, 688, 1264, 1519, 2095, 2364
ApeKI	GCWGC	4 cut(s)	222, 625, 648, 952
ApoI	RAATTY	3 cut(s)	104, 965, 1106
AseI	ATTAAT	2 cut(s)	1017, 1701
Asp700I	GAANNNNTTC	1 cut(s)	1886
AspLEI	GCGC	1 cut(s)	1683
AspS9I	GGNCC	5 cut(s)	488, 611, 1085, 1252, 2365
AsuC2I	CCSGG	4 cut(s)	253, 254, 1454, 1873
AsuHPI	GGTGA	3 cut(s)	120, 2074, 2250
AvaI	CYCGRG	5 cut(s)	252, 800, 1282, 1337, 2303
AvaII	GGWCC	3 cut(s)	611, 1085, 1252
BaeI	ACNNNNGTAYC	2 cut(s)	393, 426
BalI	TGGCCA	1 cut(s)	1266
BamHI	GGATCC	2 cut(s)	520, 868
BanII	GRGCYC	3 cut(s)	930, 1332, 1429
BarI	GAAGNNNNNNTAC	2 cut(s)	157, 189
BauI	CACGAG	1 cut(s)	1641
Bbv12I	GWGCWC	5 cut(s)	301, 930, 1332, 1405, 1429
BbvI	GCAGC	4 cut(s)	234, 637, 660, 939
BccI	CCATC	9 cut(s)	488, 602, 1320, 1370, 1415, 1715, 1787, 1899, 1927
BceAI	ACGGC	3 cut(s)	428, 1047, 2082
BcgI	CGANNNNNNTGC	2 cut(s)	617, 651
BciT130I	CCWGG	2 cut(s)	366, 2340
BcnI	CCSGG	4 cut(s)	253, 254, 1454, 1873
BcoDI	GTCTC	6 cut(s)	103, 332, 768, 1605, 2196, 2313
BfaI	CTAG	5 cut(s)	314, 680, 923, 1002, 1398
BfmI	CTRYAG	1 cut(s)	942
BfrI	CTTAAG	1 cut(s)	1345
BglI	GCCNNNNNGGC	1 cut(s)	332
BisI	GCNGC	5 cut(s)	223, 626, 649, 691, 953
BlsI	GCNGC	5 cut(s)	224, 627, 650, 692, 954
Bme1390I	CCNGG	6 cut(s)	253, 254, 366, 1454, 1873, 2340
Bme18I	GGWCC	3 cut(s)	611, 1085, 1252
BmeRI	GACNNNNNGTC	1 cut(s)	1355
BmeT110I	CYCGRG	5 cut(s)	252, 800, 1282, 1337, 2303
BmgT120I	GGNCC	5 cut(s)	488, 611, 1085, 1252, 2365
BmiI	GGNNCC	5 cut(s)	522, 870, 1087, 1254, 2367
BmrFI	CCNGG	6 cut(s)	253, 254, 366, 1454, 1873, 2340
BmrI	ACTGGG	3 cut(s)	1363, 1558, 2155
BmsI	GCATC	9 cut(s)	51, 128, 643, 942, 1183, 1426, 1459, 1759, 1917
BmuI	ACTGGG	3 cut(s)	1363, 1558, 2155
Bpu10I	CCTNAGC	1 cut(s)	300
BpuEI	CTTGAG	3 cut(s)	600, 1612, 2132
BpuMI	CCSGG	4 cut(s)	253, 254, 1454, 1873
BsaAI	YACGTR	1 cut(s)	1023
BsaHI	GRCGYC	1 cut(s)	2334
BsaI	GGTCTC	1 cut(s)	332
BsaJI	CCNNGG	4 cut(s)	252, 892, 1505, 2338
Bsc4I	CCNNNNNNNGG	2 cut(s)	497, 1262
Bse118I	RCCGGY	2 cut(s)	149, 693
Bse1I	ACTGG	8 cut(s)	336, 346, 409, 858, 1358, 1553, 2008, 2150
Bse3DI	GCAATG	1 cut(s)	589
BseBI	CCWGG	2 cut(s)	366, 2340
BseDI	CCNNGG	4 cut(s)	252, 892, 1505, 2338
BseGI	GGATG	4 cut(s)	1165, 1312, 1381, 1474
BseLI	CCNNNNNNNGG	2 cut(s)	497, 1262
BseMI	GCAATG	1 cut(s)	589
BseMII	CTCAG	7 cut(s)	158, 314, 498, 1491, 1629, 1802, 1925
BseNI	ACTGG	8 cut(s)	336, 346, 409, 858, 1358, 1553, 2008, 2150
BseRI	GAGGAG	3 cut(s)	1609, 2214, 2365
BseXI	GCAGC	4 cut(s)	234, 637, 660, 939
BseYI	CCCAGC	2 cut(s)	382, 1139
BshFI	GGCC	7 cut(s)	149, 490, 690, 1266, 1521, 2097, 2366
BsiHKAI	GWGCWC	5 cut(s)	301, 930, 1332, 1405, 1429
BsiHKCI	CYCGRG	5 cut(s)	252, 800, 1282, 1337, 2303
BsiSI	CCGG	5 cut(s)	150, 253, 694, 1453, 1873
BsiWI	CGTACG	1 cut(s)	285
BslFI	GGGAC	5 cut(s)	489, 1565, 2028, 2162, 2321
BslI	CCNNNNNNNGG	2 cut(s)	497, 1262
BsmAI	GTCTC	6 cut(s)	103, 332, 768, 1605, 2196, 2313
BsmFI	GGGAC	5 cut(s)	489, 1565, 2028, 2162, 2321
BsmI	GAATGC	1 cut(s)	2216
BsnI	GGCC	7 cut(s)	149, 490, 690, 1266, 1521, 2097, 2366
Bso31I	GGTCTC	1 cut(s)	332
BsoBI	CYCGRG	5 cut(s)	252, 800, 1282, 1337, 2303
Bsp1286I	GDGCHC	5 cut(s)	301, 930, 1332, 1405, 1429
BspACI	CCGC	5 cut(s)	110, 380, 441, 691, 1442
BspANI	GGCC	7 cut(s)	149, 490, 690, 1266, 1521, 2097, 2366
BspCNI	CTCAG	7 cut(s)	157, 313, 499, 1492, 1628, 1803, 1924
BspHI	TCATGA	4 cut(s)	1828, 2155, 2185, 2227
BspLI	GGNNCC	5 cut(s)	522, 870, 1087, 1254, 2367
BspPI	GGATC	8 cut(s)	264, 515, 528, 659, 863, 876, 1660, 2245
BspTI	CTTAAG	1 cut(s)	1345
BspTNI	GGTCTC	1 cut(s)	332
BsrBI	CCGCTC	1 cut(s)	112
BsrDI	GCAATG	1 cut(s)	589
BsrFI	RCCGGY	2 cut(s)	149, 693
BsrI	ACTGG	8 cut(s)	336, 346, 409, 858, 1358, 1553, 2008, 2150
BssAI	RCCGGY	2 cut(s)	149, 693
BssECI	CCNNGG	4 cut(s)	252, 892, 1505, 2338
BssNI	GRCGYC	1 cut(s)	2334
BssSI	CACGAG	1 cut(s)	1641
BssT1I	CCWWGG	1 cut(s)	1505
Bst2BI	CACGAG	1 cut(s)	1641
Bst2UI	CCWGG	2 cut(s)	366, 2340
Bst6I	CTCTTC	1 cut(s)	462
BstACI	GRCGYC	1 cut(s)	2334
BstAFI	CTTAAG	1 cut(s)	1345
BstAPI	GCANNNNNTGC	2 cut(s)	1469, 2222
BstBAI	YACGTR	1 cut(s)	1023
BstC8I	GCNNGC	4 cut(s)	435, 513, 758, 1685
BstDEI	CTNAG	7 cut(s)	144, 300, 507, 1500, 1615, 1811, 1911
BstDSI	CCRYGG	1 cut(s)	892
BstEII	GGTNACC	1 cut(s)	596
BstF5I	GGATG	4 cut(s)	1165, 1312, 1381, 1474
BstHHI	GCGC	1 cut(s)	1683
BstMAI	GTCTC	6 cut(s)	103, 332, 768, 1605, 2196, 2313
BstMWI	GCNNNNNNNGC	9 cut(s)	332, 631, 845, 1193, 1424, 1469, 2222, 2340, 2349
BstNI	CCWGG	2 cut(s)	366, 2340
BstNSI	RCATGY	1 cut(s)	1249
BstPI	GGTNACC	1 cut(s)	596
BstSCI	CCNGG	6 cut(s)	251, 252, 364, 1452, 1871, 2338
BstSFI	CTRYAG	1 cut(s)	942
BstV1I	GCAGC	4 cut(s)	234, 637, 660, 939
BstX2I	RGATCY	4 cut(s)	520, 664, 868, 1652
BstXI	CCANNNNNNTGG	1 cut(s)	865
BstYI	RGATCY	4 cut(s)	520, 664, 868, 1652
BsuRI	GGCC	7 cut(s)	149, 490, 690, 1266, 1521, 2097, 2366
BtgI	CCRYGG	1 cut(s)	892
BtsCI	GGATG	4 cut(s)	1165, 1312, 1381, 1474
BtsIMutI	CAGTG	4 cut(s)	865, 1351, 1359, 2015
Cac8I	GCNNGC	4 cut(s)	435, 513, 758, 1685
CciI	TCATGA	4 cut(s)	1828, 2155, 2185, 2227
CfoI	GCGC	1 cut(s)	1683
Cfr10I	RCCGGY	2 cut(s)	149, 693
Cfr13I	GGNCC	5 cut(s)	488, 611, 1085, 1252, 2365
Cfr9I	CCCGGG	1 cut(s)	252
CseI	GACGC	1 cut(s)	2323
Csp6I	GTAC	5 cut(s)	72, 85, 286, 656, 738
CviQI	GTAC	5 cut(s)	72, 85, 286, 656, 738
DdeI	CTNAG	7 cut(s)	144, 300, 507, 1500, 1615, 1811, 1911
DraI	TTTAAA	1 cut(s)	1111
DraIII	CACNNNGTG	1 cut(s)	2087
DrdI	GACNNNNNNGTC	1 cut(s)	346
DriI	GACNNNNNGTC	1 cut(s)	1355
DseDI	GACNNNNNNGTC	1 cut(s)	346
EaeI	YGGCCR	2 cut(s)	1264, 2095
Eam1104I	CTCTTC	1 cut(s)	462
Eam1105I	GACNNNNNGTC	1 cut(s)	1355
EarI	CTCTTC	1 cut(s)	462
Ecl136II	GAGCTC	3 cut(s)	928, 1330, 1427
Eco130I	CCWWGG	1 cut(s)	1505
Eco147I	AGGCCT	1 cut(s)	1521
Eco24I	GRGCYC	3 cut(s)	930, 1332, 1429
Eco31I	GGTCTC	1 cut(s)	332
Eco47I	GGWCC	3 cut(s)	611, 1085, 1252
Eco53kI	GAGCTC	3 cut(s)	928, 1330, 1427
Eco57I	CTGAAG	1 cut(s)	2029
Eco88I	CYCGRG	5 cut(s)	252, 800, 1282, 1337, 2303
Eco91I	GGTNACC	1 cut(s)	596
EcoICRI	GAGCTC	3 cut(s)	928, 1330, 1427
EcoO109I	RGGNCCY	1 cut(s)	1085
EcoO65I	GGTNACC	1 cut(s)	596
EcoRII	CCWGG	2 cut(s)	364, 2338
EcoT14I	CCWWGG	1 cut(s)	1505
EcoT22I	ATGCAT	1 cut(s)	270
EcoT38I	GRGCYC	3 cut(s)	930, 1332, 1429
ErhI	CCWWGG	1 cut(s)	1505
FaqI	GGGAC	5 cut(s)	489, 1565, 2028, 2162, 2321
FauI	CCCGC	1 cut(s)	117
FauNDI	CATATG	1 cut(s)	557
FblI	GTMKAC	1 cut(s)	2292
Fnu4HI	GCNGC	5 cut(s)	223, 626, 649, 691, 953
FokI	GGATG	4 cut(s)	1172, 1299, 1388, 1481
FriOI	GRGCYC	3 cut(s)	930, 1332, 1429
Fsp4HI	GCNGC	5 cut(s)	223, 626, 649, 691, 953
FspBI	CTAG	5 cut(s)	314, 680, 923, 1002, 1398
GlaI	GCGC	1 cut(s)	1682
GluI	GCNGC	5 cut(s)	223, 626, 649, 691, 953
GsaI	CCCAGC	2 cut(s)	386, 1143
HaeIII	GGCC	7 cut(s)	149, 490, 690, 1266, 1521, 2097, 2366
HapII	CCGG	5 cut(s)	150, 253, 694, 1453, 1873
HgaI	GACGC	1 cut(s)	2323
HhaI	GCGC	1 cut(s)	1683
Hin1I	GRCGYC	1 cut(s)	2334
Hin6I	GCGC	1 cut(s)	1681
HinP1I	GCGC	1 cut(s)	1681
HincII	GTYRAC	1 cut(s)	2293
HindII	GTYRAC	1 cut(s)	2293
HindIII	AAGCTT	3 cut(s)	785, 1095, 1125
HinfI	GANTC	8 cut(s)	89, 707, 854, 910, 1613, 1847, 2024, 2306
HpaII	CCGG	5 cut(s)	150, 253, 694, 1453, 1873
HphI	GGTGA	3 cut(s)	120, 2074, 2250
Hpy166II	GTNNAC	3 cut(s)	209, 1728, 2293
Hpy188I	TCNGA	6 cut(s)	36, 394, 900, 1501, 1812, 2250
Hpy8I	GTNNAC	3 cut(s)	209, 1728, 2293
Hpy99I	CGWCG	1 cut(s)	220
HpyAV	CCTTC	6 cut(s)	680, 929, 1775, 1826, 2132, 2324
HpyCH4IV	ACGT	2 cut(s)	1022, 2180
HpyCH4V	TGCA	9 cut(s)	119, 268, 456, 839, 1132, 1439, 1637, 1715, 2174
HpyF10VI	GCNNNNNNNGC	9 cut(s)	332, 631, 845, 1193, 1424, 1469, 2222, 2340, 2349
HpyF3I	CTNAG	7 cut(s)	144, 300, 507, 1500, 1615, 1811, 1911
HpySE526I	ACGT	2 cut(s)	1022, 2180
Hsp92I	GRCGYC	1 cut(s)	2334
HspAI	GCGC	1 cut(s)	1681
LmnI	GCTCC	6 cut(s)	69, 1327, 1415, 1424, 1432, 1874
Lsp1109I	GCAGC	4 cut(s)	234, 637, 660, 939
LweI	GCATC	9 cut(s)	51, 128, 643, 942, 1183, 1426, 1459, 1759, 1917
MaeI	CTAG	5 cut(s)	314, 680, 923, 1002, 1398
MaeII	ACGT	2 cut(s)	1022, 2180
MaeIII	GTNAC	6 cut(s)	445, 596, 1307, 1357, 1583, 2125
MbiI	CCGCTC	1 cut(s)	112
MboII	GAAGA	6 cut(s)	332, 479, 1548, 2044, 2088, 2375
MflI	RGATCY	4 cut(s)	520, 664, 868, 1652
MhlI	GDGCHC	5 cut(s)	301, 930, 1332, 1405, 1429
MlsI	TGGCCA	1 cut(s)	1266
MluCI	AATT	9 cut(s)	104, 412, 965, 1106, 1268, 1702, 1753, 1819, 2379
MluNI	TGGCCA	1 cut(s)	1266
MlyI	GAGTC	2 cut(s)	1607, 2315
MmeI	TCCRAC	2 cut(s)	1513, 2001
Mox20I	TGGCCA	1 cut(s)	1266
Mph1103I	ATGCAT	1 cut(s)	270
MroXI	GAANNNNTTC	1 cut(s)	1886
MscI	TGGCCA	1 cut(s)	1266
MseI	TTAA	9 cut(s)	459, 1017, 1110, 1122, 1302, 1346, 1701, 1857, 1998
MslI	CAYNNNNRTG	4 cut(s)	1179, 1374, 1767, 2210
Msp20I	TGGCCA	1 cut(s)	1266
MspA1I	CMGCKG	2 cut(s)	382, 848
MspCI	CTTAAG	1 cut(s)	1345
MspI	CCGG	5 cut(s)	150, 253, 694, 1453, 1873
MspR9I	CCNGG	6 cut(s)	253, 254, 366, 1454, 1873, 2340
Mva1269I	GAATGC	1 cut(s)	2216
MvaI	CCWGG	2 cut(s)	366, 2340
MwoI	GCNNNNNNNGC	9 cut(s)	332, 631, 845, 1193, 1424, 1469, 2222, 2340, 2349
NciI	CCSGG	4 cut(s)	253, 254, 1454, 1873
NdeI	CATATG	1 cut(s)	557
NlaIV	GGNNCC	5 cut(s)	522, 870, 1087, 1254, 2367
NmeAIII	GCCGAG	1 cut(s)	909
NmuCI	GTSAC	4 cut(s)	445, 1357, 1583, 2125
NsiI	ATGCAT	1 cut(s)	270
NspI	RCATGY	1 cut(s)	1249
PaeR7I	CTCGAG	2 cut(s)	1337, 2303
PagI	TCATGA	4 cut(s)	1828, 2155, 2185, 2227
PceI	AGGCCT	1 cut(s)	1521
PcsI	WCGNNNNNNNCGW	2 cut(s)	281, 441
PctI	GAATGC	1 cut(s)	2216
PdmI	GAANNNNTTC	1 cut(s)	1886
PfeI	GAWTC	6 cut(s)	89, 707, 854, 910, 1847, 2024
Pfl23II	CGTACG	1 cut(s)	285
PflMI	CCANNNNNTGG	2 cut(s)	497, 1262
PkrI	GCNGC	5 cut(s)	224, 627, 650, 692, 954
PleI	GAGTC	2 cut(s)	1607, 2314
PpsI	GAGTC	2 cut(s)	1607, 2314
Ppu21I	YACGTR	1 cut(s)	1023
PpuMI	RGGWCCY	1 cut(s)	1085
PshBI	ATTAAT	2 cut(s)	1017, 1701
PsiI	TTATAA	1 cut(s)	1604
Psp124BI	GAGCTC	3 cut(s)	930, 1332, 1429
Psp5II	RGGWCCY	1 cut(s)	1085
Psp6I	CCWGG	2 cut(s)	364, 2338
PspEI	GGTNACC	1 cut(s)	596
PspFI	CCCAGC	2 cut(s)	382, 1139
PspGI	CCWGG	2 cut(s)	364, 2338
PspLI	CGTACG	1 cut(s)	285
PspN4I	GGNNCC	5 cut(s)	522, 870, 1087, 1254, 2367
PspPI	GGNCC	5 cut(s)	488, 611, 1085, 1252, 2365
PspPPI	RGGWCCY	1 cut(s)	1085
PsuI	RGATCY	4 cut(s)	520, 664, 868, 1652
PvuII	CAGCTG	1 cut(s)	848
RsaI	GTAC	5 cut(s)	73, 86, 287, 657, 739
RsaNI	GTAC	5 cut(s)	72, 85, 286, 656, 738
RseI	CAYNNNNRTG	4 cut(s)	1179, 1374, 1767, 2210
SacI	GAGCTC	3 cut(s)	930, 1332, 1429
SalI	GTCGAC	1 cut(s)	2291
SaqAI	TTAA	9 cut(s)	459, 1017, 1110, 1122, 1302, 1346, 1701, 1857, 1998
SatI	GCNGC	5 cut(s)	223, 626, 649, 691, 953
Sau96I	GGNCC	5 cut(s)	488, 611, 1085, 1252, 2365
SchI	GAGTC	2 cut(s)	1607, 2315
ScrFI	CCNGG	6 cut(s)	253, 254, 366, 1454, 1873, 2340
SduI	GDGCHC	5 cut(s)	301, 930, 1332, 1405, 1429
SfaNI	GCATC	9 cut(s)	51, 128, 643, 942, 1183, 1426, 1459, 1759, 1917
SfcI	CTRYAG	1 cut(s)	942
Sfr274I	CTCGAG	2 cut(s)	1337, 2303
SinI	GGWCC	3 cut(s)	611, 1085, 1252
SlaI	CTCGAG	2 cut(s)	1337, 2303
SmaI	CCCGGG	1 cut(s)	254
SmiMI	CAYNNNNRTG	4 cut(s)	1179, 1374, 1767, 2210
SmlI	CTYRAG	6 cut(s)	615, 1337, 1345, 1591, 2111, 2303
SmoI	CTYRAG	6 cut(s)	615, 1337, 1345, 1591, 2111, 2303
Sse9I	AATT	9 cut(s)	104, 412, 965, 1106, 1268, 1702, 1753, 1819, 2379
SseBI	AGGCCT	1 cut(s)	1521
SsiI	CCGC	5 cut(s)	110, 380, 441, 691, 1442
SspMI	CTAG	5 cut(s)	314, 680, 923, 1002, 1398
SstI	GAGCTC	3 cut(s)	930, 1332, 1429
StuI	AGGCCT	1 cut(s)	1521
StyD4I	CCNGG	6 cut(s)	251, 252, 364, 1452, 1871, 2338
StyI	CCWWGG	1 cut(s)	1505
TaiI	ACGT	2 cut(s)	1025, 2183
TaqI	TCGA	7 cut(s)	46, 137, 1338, 1957, 2074, 2292, 2304
TasI	AATT	9 cut(s)	104, 412, 965, 1106, 1268, 1702, 1753, 1819, 2379
TatI	WGTACW	1 cut(s)	655
TauI	GCSGC	1 cut(s)	693
TfiI	GAWTC	6 cut(s)	89, 707, 854, 910, 1847, 2024
Tru1I	TTAA	9 cut(s)	459, 1017, 1110, 1122, 1302, 1346, 1701, 1857, 1998
Tru9I	TTAA	9 cut(s)	459, 1017, 1110, 1122, 1302, 1346, 1701, 1857, 1998
TscAI	CASTG	4 cut(s)	865, 1358, 1366, 2015
TseFI	GTSAC	4 cut(s)	445, 1357, 1583, 2125
TseI	GCWGC	4 cut(s)	222, 625, 648, 952
Tsp45I	GTSAC	4 cut(s)	445, 1357, 1583, 2125
TspGWI	ACGGA	2 cut(s)	1791, 2044
TspMI	CCCGGG	1 cut(s)	252
TspRI	CASTG	4 cut(s)	865, 1358, 1366, 2015
Van91I	CCANNNNNTGG	2 cut(s)	497, 1262
Vha464I	CTTAAG	1 cut(s)	1345
VpaK11BI	GGWCC	3 cut(s)	611, 1085, 1252
VspI	ATTAAT	2 cut(s)	1017, 1701
XapI	RAATTY	3 cut(s)	104, 965, 1106
XbaI	TCTAGA	1 cut(s)	922
XceI	RCATGY	1 cut(s)	1249
XhoI	CTCGAG	2 cut(s)	1337, 2303
XmaI	CCCGGG	1 cut(s)	252
XmiI	GTMKAC	1 cut(s)	2292
XmnI	GAANNNNTTC	1 cut(s)	1886
XspI	CTAG	5 cut(s)	314, 680, 923, 1002, 1398
Zsp2I	ATGCAT	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.