Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0003586

Physical Location & Seq

Genomic Coordinates Forward (+)

7905275 .. 7917025

Gene Structure 11751 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000911

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2136 bp

ATGCATAGCACGGGTAATGCGTACGGTCAGGGTGCTCAGGGAACTGTGCTAGAGGAAGAAGCCCAACTGGCAGAGACCAGCCAGTCATGGAAAACTTTTCCAGGTCAGGCTTTTCCGCTGGGTGTATCAGAAGTTGATACTGGTGTCAATTTTGCCATTTTCTCACAGCACGCAACTGCTGTCACACTTTGCATTAAACTTGCAGAGAGGGGACAGTTTGGAGGGCCAGATGGTGGAATGACTGAGCTGGCTTTGGATCCTAAAGAGAACAAGACAGGTGACATTTGGCACATATGTATAAGGGATTTTCCCCGTAGCAATGTCCTCTATGGTTACCGTATTGATGGACCTCAAGGTTGGCAGCAAGGGCATCGGTTTGACAGCAGCATTGTACTAATAGATCCTTATGCGAAGCTAGTTGAAGGCCGCCGGTGTTTTGGAGATTCCAGAGAAAAGTTATCTGGGTTTCTTGGTACTTATGATTTTGATAGCTTGCCTTTTGATTGGGGAGACAACTACAAGCTTCCAAATATACCCGAGAATGATCTTGTTATATATGAAATGAATGTTCGTGCATTTACAGCTGATGAATCCAGTGGTCTGGATCCAGATGTTCGTGGTAGCTACCGTGGTCTGATTGACAAGATTCCACACCTTCTAGAGCTCGGCATCAATGCTGTAGAGTTGCTGCCTGTCTTCGAATTTGATGAGTTTGAGTTTCAAAGGCGTTCAAATCCTAGAGATCACATGATTAATACATGGGGCTACTCAACAATAAACTTCTTTGCCCCTATGAGCCGCTATGCGAGTGCTGGTGGAGGACCCCTTAAAGCTTCCCATGAATTTAAAGAAATGGTTAAAGCCTTGCATGGTGCTGGGATAGAGGTCATTTTGGATGTTGTCTATAACCATACAAATGAAGCTGATGATGCCTACCCTTATACCTCTTCATTTCGTGGCATAGATAATAGGGTTTATTACATGCTGGACCCAAACAATGGCCAATTACTGAACTTCTCGGGCTGTGGGAACACATTTGACTGTAACCATCCTGTTGTTATGGAGCTCATTCTCGAGAGCTTAAGACACTGGGTCACTGAATATCATGTGGATGGATTTAGATTTGACCTTGCTAGTGCTCTTTGTCGGGGAACAGATGGAGCTCCACTTGATGCACCGCCACTTATCCGGGCTATCGCAAAAGATGCCATTCTATCGAGATGTAAAGTTATTTCTGAGCCTTGGGATTGTGGAGGCCTTTATCTTGTTGGAAGATTTCCAAACTGGGACAGGTGGGCCGAATGGAATGGAATGTATCGTGACGACTTGAGGAGATTTATAAAGGGAGACTCAGGTATGAAAGGAAGTTTTGCAACTCGTGTTTCTGGATCTGCTGACCTTTACAAAACGAATAAGCGCAAGCCTTATCACAGTATTAATTTTATTATTGCACATGATGGGTTCACACTATATGATCTCGTTTCATACAATTTCAAGCACAATGATGCTAACGGAGAAGGAGGAAATGATGGAAGTAATGATAATCTGAGCTGGAATTGTGGTTATGAAGGAGAAACCGATGATTCTACTGTTAAAGCTATACGCTCCCGGCAAATGAAAAACTTCCATCTGGCGTTGATGATCTCTCAGGGAACACCAATGATGCTGATGGGAGATGAATATGGGCATACTCGATATGGAAATAACAACAGTTATGGACATGATACCGCTATTAACCATTTCCAGTGGGGACTGTTGGAATCACGGAAGAATAATCACTTCAGGTTTTTCAAAGAGGTGATAAACTATCGAAGAACACATCGTGTATTTGGCCGTGATAGATTTCTTGAGAAAAGTGATGTGACATGGCATGAAGGCAACTGGGACAATTCTGAGAGCAAGTTTCTTGCATTTACGTTTCATGACAATAATGGAGGAGACATCTACATGGCATTCAATGCTCATGATTATTTTATTGAAGTTCCGATCCCCTCACCACCAGAAAAGAGGAATTGGTTTCGTGTGGTCGACACTAATCTCGAGTCTCCCAAAGACTTTGTGCTTGAAGGCGTCCCAGGCATTAAAGGCACTTACAACATGGCCCCTTACTCCTCAATTCTTCTTGAAGCAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004133 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005977 GO:0005982 GO:0005983 GO:0006073 GO:0006091 GO:0006112 GO:0006996 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009501 GO:0009507 GO:0009532 GO:0009536 GO:0009569 GO:0009570 GO:0009657 GO:0009660 GO:0009987 GO:0015980 GO:0016043 GO:0016052 GO:0016787 GO:0016798 GO:0019156 GO:0043036 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0071840 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 ko01110 map00500 map01100 map01110

Pfam Domains

Protein Families

Alpha-amylase CBM_48

Protein Analysis

712

Amino Acids

80.51

Weight (kDa)

5.42

Isoelectric Point (pI)

30.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBM_48	PF02922	39 - 137	2.1e-11	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
Alpha-amylase	PF00128	202 - 329	7.5e-10	Alpha amylase, catalytic domain
ISOA1-3_C	PF21156	624 - 690	4.9e-12	Isoamylase 1-3, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003586)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09020
fragaria_vesca	FvH4_5g36440 FvH4_5g36440 FvH4_5g36440 FvH4_5g36440 FvH4_5g36440 FvH4_5g36440 FvH4_5g36440 FvH4_5g36440 FvH4_5g36440 FvH4_5g36440 FvH4_5g36440 FvH4_5g36440 FvH4_5g36440 FvH4_5g36440 FvH4_5g36440 FvH4_5g36440 FvH4_5g36440 FvH4_5g36440
malus_domestica	MD08G1188900.v1.1 MD15G1376800.v1.1
prunus_persica	Prupe.1G523500_v2.0.a1 Prupe.1G523500_v2.0.a1
pyrus_communis	pycom08g16260 pycom15g33660
rosa_chinensis	RchiOBHm_Chr7g0238421
rosa_laevigata	RLG00000000911
rosa_multiflora	Rmu_sc0031277.1_g000001
rosa_roxburghii	Rroxscaffold_3G00223020
rosa_rugosa	Rorug07G0312600
rosa_samantha	Rh7AG467500 Rh7BG438200 Rh7CG485500 Rh7DG454000
rosa_wichuraiana	Rw7G038820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1340
AasI	GACNNNNNNGTC	1 cut(s)	82
AccB7I	CCANNNNNTGG	2 cut(s)	233, 998
AccI	GTMKAC	1 cut(s)	2028
AciI	CCGC	5 cut(s)	116, 427, 799, 1178, 1728
AclWI	GGATC	7 cut(s)	251, 264, 395, 599, 612, 1396, 1981
AcoI	YGGCCR	2 cut(s)	1000, 1831
AcsI	RAATTY	2 cut(s)	701, 842
AcuI	CTGAAG	1 cut(s)	1765
AcyI	GRCGYC	1 cut(s)	2070
AdeI	CACNNNGTG	1 cut(s)	1823
AfaI	GTAC	3 cut(s)	23, 393, 475
AfiI	CCNNNNNNNGG	2 cut(s)	233, 998
AflII	CTTAAG	1 cut(s)	1081
AgsI	TTSAA	9 cut(s)	422, 722, 732, 1495, 1792, 1957, 1979, 2066, 2126
AhdI	GACNNNNNGTC	1 cut(s)	1091
AjnI	CCWGG	2 cut(s)	100, 2074
Alw21I	GWGCWC	5 cut(s)	37, 666, 1068, 1141, 1165
Alw26I	GTCTC	5 cut(s)	68, 504, 1341, 1932, 2049
AlwI	GGATC	7 cut(s)	251, 264, 395, 599, 612, 1396, 1981
Ama87I	CYCGRG	4 cut(s)	536, 1018, 1073, 2039
AoxI	GGCC	7 cut(s)	224, 424, 1000, 1255, 1296, 1831, 2100
ApeKI	GCWGC	3 cut(s)	361, 384, 688
ApoI	RAATTY	2 cut(s)	701, 842
AseI	ATTAAT	2 cut(s)	753, 1437
Asp700I	GAANNNNTTC	1 cut(s)	1622
AspLEI	GCGC	1 cut(s)	1419
AspS9I	GGNCC	6 cut(s)	224, 347, 821, 988, 1296, 2101
AsuC2I	CCSGG	2 cut(s)	1190, 1609
AsuHPI	GGTGA	3 cut(s)	290, 1810, 1986
AsuII	TTCGAA	1 cut(s)	699
AvaI	CYCGRG	4 cut(s)	536, 1018, 1073, 2039
AvaII	GGWCC	3 cut(s)	347, 821, 988
BaeI	ACNNNNGTAYC	2 cut(s)	129, 162
BalI	TGGCCA	1 cut(s)	1002
BamHI	GGATCC	2 cut(s)	256, 604
BanII	GRGCYC	3 cut(s)	666, 1068, 1165
BauI	CACGAG	1 cut(s)	1377
BbsI	GAAGAC	1 cut(s)	688
Bbv12I	GWGCWC	5 cut(s)	37, 666, 1068, 1141, 1165
BbvI	GCAGC	3 cut(s)	373, 396, 675
BccI	CCATC	9 cut(s)	224, 338, 1056, 1106, 1151, 1451, 1523, 1635, 1663
BceAI	ACGGC	1 cut(s)	1818
BcgI	CGANNNNNNTGC	2 cut(s)	353, 387
BciT130I	CCWGG	2 cut(s)	102, 2076
BcnI	CCSGG	2 cut(s)	1190, 1609
BcoDI	GTCTC	5 cut(s)	68, 504, 1341, 1932, 2049
BfaI	CTAG	5 cut(s)	50, 416, 659, 738, 1134
BfmI	CTRYAG	1 cut(s)	678
BfrI	CTTAAG	1 cut(s)	1081
BglI	GCCNNNNNGGC	1 cut(s)	68
BisI	GCNGC	5 cut(s)	362, 385, 427, 689, 799
BlsI	GCNGC	5 cut(s)	363, 386, 428, 690, 800
Bme1390I	CCNGG	4 cut(s)	102, 1190, 1609, 2076
Bme18I	GGWCC	3 cut(s)	347, 821, 988
BmeRI	GACNNNNNGTC	1 cut(s)	1091
BmeT110I	CYCGRG	4 cut(s)	536, 1018, 1073, 2039
BmgT120I	GGNCC	6 cut(s)	224, 347, 821, 988, 1296, 2101
BmiI	GGNNCC	5 cut(s)	258, 606, 823, 990, 2103
BmrFI	CCNGG	4 cut(s)	102, 1190, 1609, 2076
BmrI	ACTGGG	3 cut(s)	1099, 1294, 1891
BmsI	GCATC	7 cut(s)	379, 678, 919, 1162, 1195, 1495, 1653
BmuI	ACTGGG	3 cut(s)	1099, 1294, 1891
BpiI	GAAGAC	1 cut(s)	688
Bpu10I	CCTNAGC	1 cut(s)	36
Bpu14I	TTCGAA	1 cut(s)	699
BpuEI	CTTGAG	3 cut(s)	336, 1348, 1868
BpuMI	CCSGG	2 cut(s)	1190, 1609
BsaHI	GRCGYC	1 cut(s)	2070
BsaI	GGTCTC	1 cut(s)	68
BsaJI	CCNNGG	3 cut(s)	628, 1241, 2074
Bsc4I	CCNNNNNNNGG	2 cut(s)	233, 998
Bse118I	RCCGGY	1 cut(s)	429
Bse1I	ACTGG	8 cut(s)	72, 82, 145, 594, 1094, 1289, 1744, 1886
Bse3DI	GCAATG	1 cut(s)	325
BseBI	CCWGG	2 cut(s)	102, 2076
BseDI	CCNNGG	3 cut(s)	628, 1241, 2074
BseGI	GGATG	3 cut(s)	901, 1048, 1117
BseLI	CCNNNNNNNGG	2 cut(s)	233, 998
BseMI	GCAATG	1 cut(s)	325
BseMII	CTCAG	7 cut(s)	50, 234, 1227, 1365, 1538, 1661, 1884
BseNI	ACTGG	8 cut(s)	72, 82, 145, 594, 1094, 1289, 1744, 1886
BseRI	GAGGAG	3 cut(s)	1345, 1950, 2101
BseXI	GCAGC	3 cut(s)	373, 396, 675
BseYI	CCCAGC	2 cut(s)	118, 875
BshFI	GGCC	7 cut(s)	226, 426, 1002, 1257, 1298, 1833, 2102
BsiHKAI	GWGCWC	5 cut(s)	37, 666, 1068, 1141, 1165
BsiHKCI	CYCGRG	4 cut(s)	536, 1018, 1073, 2039
BsiSI	CCGG	3 cut(s)	430, 1189, 1609
BsiWI	CGTACG	1 cut(s)	21
BslFI	GGGAC	5 cut(s)	225, 1301, 1764, 1898, 2057
BslI	CCNNNNNNNGG	2 cut(s)	233, 998
BsmAI	GTCTC	5 cut(s)	68, 504, 1341, 1932, 2049
BsmFI	GGGAC	5 cut(s)	225, 1301, 1764, 1898, 2057
BsmI	GAATGC	1 cut(s)	1952
BsnI	GGCC	7 cut(s)	226, 426, 1002, 1257, 1298, 1833, 2102
Bso31I	GGTCTC	1 cut(s)	68
BsoBI	CYCGRG	4 cut(s)	536, 1018, 1073, 2039
Bsp119I	TTCGAA	1 cut(s)	699
Bsp1286I	GDGCHC	5 cut(s)	37, 666, 1068, 1141, 1165
Bsp143I	GATC	9 cut(s)	256, 400, 544, 604, 742, 1388, 1474, 1641, 1986
BspACI	CCGC	5 cut(s)	116, 427, 799, 1178, 1728
BspANI	GGCC	7 cut(s)	226, 426, 1002, 1257, 1298, 1833, 2102
BspCNI	CTCAG	7 cut(s)	49, 235, 1228, 1364, 1539, 1660, 1885
BspHI	TCATGA	2 cut(s)	1921, 1963
BspLI	GGNNCC	5 cut(s)	258, 606, 823, 990, 2103
BspPI	GGATC	7 cut(s)	251, 264, 395, 599, 612, 1396, 1981
BspT104I	TTCGAA	1 cut(s)	699
BspTI	CTTAAG	1 cut(s)	1081
BspTNI	GGTCTC	1 cut(s)	68
BsrDI	GCAATG	1 cut(s)	325
BsrFI	RCCGGY	1 cut(s)	429
BsrI	ACTGG	8 cut(s)	72, 82, 145, 594, 1094, 1289, 1744, 1886
BssAI	RCCGGY	1 cut(s)	429
BssECI	CCNNGG	3 cut(s)	628, 1241, 2074
BssMI	GATC	9 cut(s)	256, 400, 544, 604, 742, 1388, 1474, 1641, 1986
BssNI	GRCGYC	1 cut(s)	2070
BssSI	CACGAG	1 cut(s)	1377
BssT1I	CCWWGG	1 cut(s)	1241
Bst2BI	CACGAG	1 cut(s)	1377
Bst2UI	CCWGG	2 cut(s)	102, 2076
Bst6I	CTCTTC	1 cut(s)	952
BstACI	GRCGYC	1 cut(s)	2070
BstAFI	CTTAAG	1 cut(s)	1081
BstAPI	GCANNNNNTGC	2 cut(s)	1205, 1958
BstBI	TTCGAA	1 cut(s)	699
BstC8I	GCNNGC	4 cut(s)	171, 249, 494, 1421
BstDEI	CTNAG	7 cut(s)	36, 243, 1236, 1351, 1547, 1647, 1893
BstDSI	CCRYGG	1 cut(s)	628
BstEII	GGTNACC	1 cut(s)	332
BstF5I	GGATG	3 cut(s)	901, 1048, 1117
BstHHI	GCGC	1 cut(s)	1419
BstKTI	GATC	9 cut(s)	259, 403, 547, 607, 745, 1391, 1477, 1644, 1989
BstMAI	GTCTC	5 cut(s)	68, 504, 1341, 1932, 2049
BstMBI	GATC	9 cut(s)	256, 400, 544, 604, 742, 1388, 1474, 1641, 1986
BstMWI	GCNNNNNNNGC	8 cut(s)	68, 367, 581, 929, 1205, 1958, 2076, 2085
BstNI	CCWGG	2 cut(s)	102, 2076
BstNSI	RCATGY	1 cut(s)	985
BstPI	GGTNACC	1 cut(s)	332
BstSCI	CCNGG	4 cut(s)	100, 1188, 1607, 2074
BstSFI	CTRYAG	1 cut(s)	678
BstV1I	GCAGC	3 cut(s)	373, 396, 675
BstV2I	GAAGAC	1 cut(s)	688
BstX2I	RGATCY	4 cut(s)	256, 400, 604, 1388
BstXI	CCANNNNNNTGG	1 cut(s)	601
BstYI	RGATCY	4 cut(s)	256, 400, 604, 1388
BsuRI	GGCC	7 cut(s)	226, 426, 1002, 1257, 1298, 1833, 2102
BtgI	CCRYGG	1 cut(s)	628
BtsCI	GGATG	3 cut(s)	901, 1048, 1117
BtsIMutI	CAGTG	4 cut(s)	601, 1087, 1095, 1751
Cac8I	GCNNGC	4 cut(s)	171, 249, 494, 1421
CciI	TCATGA	2 cut(s)	1921, 1963
CfoI	GCGC	1 cut(s)	1419
Cfr10I	RCCGGY	1 cut(s)	429
Cfr13I	GGNCC	6 cut(s)	224, 347, 821, 988, 1296, 2101
CseI	GACGC	1 cut(s)	2059
Csp6I	GTAC	3 cut(s)	22, 392, 474
CviQI	GTAC	3 cut(s)	22, 392, 474
DdeI	CTNAG	7 cut(s)	36, 243, 1236, 1351, 1547, 1647, 1893
DpnI	GATC	9 cut(s)	258, 402, 546, 606, 744, 1390, 1476, 1643, 1988
DpnII	GATC	9 cut(s)	256, 400, 544, 604, 742, 1388, 1474, 1641, 1986
DraI	TTTAAA	1 cut(s)	847
DraIII	CACNNNGTG	1 cut(s)	1823
DrdI	GACNNNNNNGTC	1 cut(s)	82
DriI	GACNNNNNGTC	1 cut(s)	1091
DseDI	GACNNNNNNGTC	1 cut(s)	82
EaeI	YGGCCR	2 cut(s)	1000, 1831
Eam1104I	CTCTTC	1 cut(s)	952
Eam1105I	GACNNNNNGTC	1 cut(s)	1091
EarI	CTCTTC	1 cut(s)	952
Ecl136II	GAGCTC	3 cut(s)	664, 1066, 1163
Eco130I	CCWWGG	1 cut(s)	1241
Eco147I	AGGCCT	1 cut(s)	1257
Eco24I	GRGCYC	3 cut(s)	666, 1068, 1165
Eco31I	GGTCTC	1 cut(s)	68
Eco47I	GGWCC	3 cut(s)	347, 821, 988
Eco53kI	GAGCTC	3 cut(s)	664, 1066, 1163
Eco57I	CTGAAG	1 cut(s)	1765
Eco88I	CYCGRG	4 cut(s)	536, 1018, 1073, 2039
Eco91I	GGTNACC	1 cut(s)	332
EcoICRI	GAGCTC	3 cut(s)	664, 1066, 1163
EcoO109I	RGGNCCY	1 cut(s)	821
EcoO65I	GGTNACC	1 cut(s)	332
EcoRII	CCWGG	2 cut(s)	100, 2074
EcoT14I	CCWWGG	1 cut(s)	1241
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	3 cut(s)	666, 1068, 1165
ErhI	CCWWGG	1 cut(s)	1241
FaqI	GGGAC	5 cut(s)	225, 1301, 1764, 1898, 2057
FauNDI	CATATG	1 cut(s)	293
FblI	GTMKAC	1 cut(s)	2028
Fnu4HI	GCNGC	5 cut(s)	362, 385, 427, 689, 799
FokI	GGATG	3 cut(s)	908, 1035, 1124
FriOI	GRGCYC	3 cut(s)	666, 1068, 1165
Fsp4HI	GCNGC	5 cut(s)	362, 385, 427, 689, 799
FspBI	CTAG	5 cut(s)	50, 416, 659, 738, 1134
GlaI	GCGC	1 cut(s)	1418
GluI	GCNGC	5 cut(s)	362, 385, 427, 689, 799
GsaI	CCCAGC	2 cut(s)	122, 879
HaeIII	GGCC	7 cut(s)	226, 426, 1002, 1257, 1298, 1833, 2102
HapII	CCGG	3 cut(s)	430, 1189, 1609
HgaI	GACGC	1 cut(s)	2059
HhaI	GCGC	1 cut(s)	1419
Hin1I	GRCGYC	1 cut(s)	2070
Hin6I	GCGC	1 cut(s)	1417
HinP1I	GCGC	1 cut(s)	1417
HincII	GTYRAC	1 cut(s)	2029
HindII	GTYRAC	1 cut(s)	2029
HindIII	AAGCTT	2 cut(s)	521, 831
HinfI	GANTC	7 cut(s)	443, 590, 646, 1349, 1583, 1760, 2042
HpaII	CCGG	3 cut(s)	430, 1189, 1609
HphI	GGTGA	3 cut(s)	290, 1810, 1986
Hpy166II	GTNNAC	2 cut(s)	1464, 2029
Hpy188I	TCNGA	6 cut(s)	130, 636, 1237, 1548, 1894, 1986
Hpy8I	GTNNAC	2 cut(s)	1464, 2029
HpyAV	CCTTC	6 cut(s)	416, 665, 1511, 1562, 1868, 2060
HpyCH4IV	ACGT	1 cut(s)	1916
HpyCH4V	TGCA	9 cut(s)	4, 192, 203, 575, 868, 1175, 1373, 1451, 1910
HpyF10VI	GCNNNNNNNGC	8 cut(s)	68, 367, 581, 929, 1205, 1958, 2076, 2085
HpyF3I	CTNAG	7 cut(s)	36, 243, 1236, 1351, 1547, 1647, 1893
HpySE526I	ACGT	1 cut(s)	1916
Hsp92I	GRCGYC	1 cut(s)	2070
HspAI	GCGC	1 cut(s)	1417
Kzo9I	GATC	9 cut(s)	256, 400, 544, 604, 742, 1388, 1474, 1641, 1986
LmnI	GCTCC	4 cut(s)	1063, 1160, 1168, 1610
Lsp1109I	GCAGC	3 cut(s)	373, 396, 675
LweI	GCATC	7 cut(s)	379, 678, 919, 1162, 1195, 1495, 1653
MaeI	CTAG	5 cut(s)	50, 416, 659, 738, 1134
MaeII	ACGT	1 cut(s)	1916
MaeIII	GTNAC	7 cut(s)	181, 278, 332, 1043, 1093, 1319, 1861
MalI	GATC	9 cut(s)	258, 402, 546, 606, 744, 1390, 1476, 1643, 1988
MboI	GATC	9 cut(s)	256, 400, 544, 604, 742, 1388, 1474, 1641, 1986
MboII	GAAGA	7 cut(s)	68, 688, 939, 1284, 1780, 1824, 2111
MflI	RGATCY	4 cut(s)	256, 400, 604, 1388
MhlI	GDGCHC	5 cut(s)	37, 666, 1068, 1141, 1165
MlsI	TGGCCA	1 cut(s)	1002
MluNI	TGGCCA	1 cut(s)	1002
MlyI	GAGTC	2 cut(s)	1343, 2051
MmeI	TCCRAC	2 cut(s)	1249, 1737
Mox20I	TGGCCA	1 cut(s)	1002
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	1622
MscI	TGGCCA	1 cut(s)	1002
MslI	CAYNNNNRTG	4 cut(s)	915, 1110, 1503, 1946
Msp20I	TGGCCA	1 cut(s)	1002
MspA1I	CMGCKG	2 cut(s)	118, 584
MspCI	CTTAAG	1 cut(s)	1081
MspI	CCGG	3 cut(s)	430, 1189, 1609
MspR9I	CCNGG	4 cut(s)	102, 1190, 1609, 2076
Mva1269I	GAATGC	1 cut(s)	1952
MvaI	CCWGG	2 cut(s)	102, 2076
MwoI	GCNNNNNNNGC	8 cut(s)	68, 367, 581, 929, 1205, 1958, 2076, 2085
NciI	CCSGG	2 cut(s)	1190, 1609
NdeI	CATATG	1 cut(s)	293
NdeII	GATC	9 cut(s)	256, 400, 544, 604, 742, 1388, 1474, 1641, 1986
NlaIV	GGNNCC	5 cut(s)	258, 606, 823, 990, 2103
NmeAIII	GCCGAG	1 cut(s)	645
NmuCI	GTSAC	5 cut(s)	181, 278, 1093, 1319, 1861
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	985
NspV	TTCGAA	1 cut(s)	699
PaeR7I	CTCGAG	2 cut(s)	1073, 2039
PagI	TCATGA	2 cut(s)	1921, 1963
PceI	AGGCCT	1 cut(s)	1257
PcsI	WCGNNNNNNNCGW	1 cut(s)	17
PctI	GAATGC	1 cut(s)	1952
PdmI	GAANNNNTTC	1 cut(s)	1622
PfeI	GAWTC	5 cut(s)	443, 590, 646, 1583, 1760
Pfl23II	CGTACG	1 cut(s)	21
PflMI	CCANNNNNTGG	2 cut(s)	233, 998
PkrI	GCNGC	5 cut(s)	363, 386, 428, 690, 800
PleI	GAGTC	2 cut(s)	1343, 2050
PpsI	GAGTC	2 cut(s)	1343, 2050
PpuMI	RGGWCCY	1 cut(s)	821
PshBI	ATTAAT	2 cut(s)	753, 1437
PsiI	TTATAA	1 cut(s)	1340
Psp124BI	GAGCTC	3 cut(s)	666, 1068, 1165
Psp5II	RGGWCCY	1 cut(s)	821
Psp6I	CCWGG	2 cut(s)	100, 2074
PspEI	GGTNACC	1 cut(s)	332
PspFI	CCCAGC	2 cut(s)	118, 875
PspGI	CCWGG	2 cut(s)	100, 2074
PspLI	CGTACG	1 cut(s)	21
PspN4I	GGNNCC	5 cut(s)	258, 606, 823, 990, 2103
PspPI	GGNCC	6 cut(s)	224, 347, 821, 988, 1296, 2101
PspPPI	RGGWCCY	1 cut(s)	821
PsuI	RGATCY	4 cut(s)	256, 400, 604, 1388
PvuII	CAGCTG	1 cut(s)	584
RsaI	GTAC	3 cut(s)	23, 393, 475
RsaNI	GTAC	3 cut(s)	22, 392, 474
RseI	CAYNNNNRTG	4 cut(s)	915, 1110, 1503, 1946
SacI	GAGCTC	3 cut(s)	666, 1068, 1165
SalI	GTCGAC	1 cut(s)	2027
SatI	GCNGC	5 cut(s)	362, 385, 427, 689, 799
Sau3AI	GATC	9 cut(s)	256, 400, 544, 604, 742, 1388, 1474, 1641, 1986
Sau96I	GGNCC	6 cut(s)	224, 347, 821, 988, 1296, 2101
SchI	GAGTC	2 cut(s)	1343, 2051
ScrFI	CCNGG	4 cut(s)	102, 1190, 1609, 2076
SduI	GDGCHC	5 cut(s)	37, 666, 1068, 1141, 1165
SfaNI	GCATC	7 cut(s)	379, 678, 919, 1162, 1195, 1495, 1653
SfcI	CTRYAG	1 cut(s)	678
Sfr274I	CTCGAG	2 cut(s)	1073, 2039
SfuI	TTCGAA	1 cut(s)	699
SgrAI	CRCCGGYG	1 cut(s)	429
SinI	GGWCC	3 cut(s)	347, 821, 988
SlaI	CTCGAG	2 cut(s)	1073, 2039
SmiMI	CAYNNNNRTG	4 cut(s)	915, 1110, 1503, 1946
SmlI	CTYRAG	6 cut(s)	351, 1073, 1081, 1327, 1847, 2039
SmoI	CTYRAG	6 cut(s)	351, 1073, 1081, 1327, 1847, 2039
SseBI	AGGCCT	1 cut(s)	1257
SsiI	CCGC	5 cut(s)	116, 427, 799, 1178, 1728
SspMI	CTAG	5 cut(s)	50, 416, 659, 738, 1134
SstI	GAGCTC	3 cut(s)	666, 1068, 1165
StuI	AGGCCT	1 cut(s)	1257
StyD4I	CCNGG	4 cut(s)	100, 1188, 1607, 2074
StyI	CCWWGG	1 cut(s)	1241
TaiI	ACGT	1 cut(s)	1919
TaqI	TCGA	7 cut(s)	699, 1074, 1217, 1693, 1810, 2028, 2040
TatI	WGTACW	1 cut(s)	391
TauI	GCSGC	2 cut(s)	429, 801
TfiI	GAWTC	5 cut(s)	443, 590, 646, 1583, 1760
TscAI	CASTG	4 cut(s)	601, 1094, 1102, 1751
TseFI	GTSAC	5 cut(s)	181, 278, 1093, 1319, 1861
TseI	GCWGC	3 cut(s)	361, 384, 688
Tsp45I	GTSAC	5 cut(s)	181, 278, 1093, 1319, 1861
TspGWI	ACGGA	2 cut(s)	1527, 1780
TspRI	CASTG	4 cut(s)	601, 1094, 1102, 1751
Van91I	CCANNNNNTGG	2 cut(s)	233, 998
Vha464I	CTTAAG	1 cut(s)	1081
VpaK11BI	GGWCC	3 cut(s)	347, 821, 988
VspI	ATTAAT	2 cut(s)	753, 1437
XapI	RAATTY	2 cut(s)	701, 842
XbaI	TCTAGA	1 cut(s)	658
XceI	RCATGY	1 cut(s)	985
XhoI	CTCGAG	2 cut(s)	1073, 2039
XmiI	GTMKAC	1 cut(s)	2028
XmnI	GAANNNNTTC	1 cut(s)	1622
XspI	CTAG	5 cut(s)	50, 416, 659, 738, 1134
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.