Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0031277.1

Orthogroup ID

OG0003586

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 7143

Gene Structure 7143 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0031277.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1081 bp

cttccaatctccatggttgaatcgtaaaggccaagtgcctacttttatgaaactgtgccattatcaacatcatcataatcagaatagcaatcgagaaagatcaaagatgctcctgcgtaccccacatttgtacgattcaaatgtctccaaattcccgctctttgcatcatcatcaccattttcgacaactcaggccggtgcttcaccgtgtatagtagcttcccctgttcttgatgttgggttgaagttgagtaaacaagcgacgggcagcaatcagcaagggcttgtgagaaagacccgggatcatgtcatgcatagcacgggtaatgcgtacggtcagggtgctcagggaagtgtgctagaggaagaagcccaactggcagagaccagccagtcatggaaaacttttccaggtcaggcttttccgctgggtgtatcagaggttgatactggtgtcaattttgccattttctcacagcacgcaaccgccgtcacactttgcattaaacttgaagagaggggacagtttggagggccagatggtggaatgactgagctggctttggatcctaaagagaacaagacaggcgacatttggcacatatgtataaaggattttccccgtagcaatgtcctttatggttaccgtattgatggacctcaaggttggcagcaagggcatcggtttgacagcagcattgtactaatagatccttatgcgaagctagttgaaggccgccggtattttggagattccagagaaaagttatctgggtttcttggtacttatgattttgatagcttgccttttgattggggagacaactacaagcttccaaatatacccgagaatgatcttgttatatatgaaatgaatgttcgtgcatttacagctgatgaatccagtggtctggatccagatgttcgtggtagctaccgtggtctgattgacaaggtaatcgtggattgtggctatgaaaaactatatattcatatactgagccacattttctatgcaatttcaatacttccgtttgtttccaagaaacttttaagaggttttatttacaagcaactatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004133 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005977 GO:0005982 GO:0005983 GO:0006073 GO:0006091 GO:0006112 GO:0006996 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009501 GO:0009507 GO:0009532 GO:0009536 GO:0009569 GO:0009570 GO:0009657 GO:0009660 GO:0009987 GO:0015980 GO:0016043 GO:0016052 GO:0016787 GO:0016798 GO:0019156 GO:0043036 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0071840 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 ko01110 map00500 map01100 map01110

Pfam Domains

Protein Families

Alpha-amylase CBM_48

Protein Analysis

359

Amino Acids

40.24

Weight (kDa)

6.93

Isoelectric Point (pI)

47.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003586)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09020
fragaria_vesca	FvH4_5g36440 FvH4_5g36440 FvH4_5g36440 FvH4_5g36440 FvH4_5g36440 FvH4_5g36440 FvH4_5g36440 FvH4_5g36440 FvH4_5g36440 FvH4_5g36440 FvH4_5g36440 FvH4_5g36440 FvH4_5g36440 FvH4_5g36440 FvH4_5g36440 FvH4_5g36440 FvH4_5g36440 FvH4_5g36440
malus_domestica	MD08G1188900.v1.1 MD15G1376800.v1.1
prunus_persica	Prupe.1G523500_v2.0.a1 Prupe.1G523500_v2.0.a1
pyrus_communis	pycom08g16260 pycom15g33660
rosa_chinensis	RchiOBHm_Chr7g0238421
rosa_laevigata	RLG00000000911
rosa_multiflora	Rmu_sc0031277.1_g000001
rosa_roxburghii	Rroxscaffold_3G00223020
rosa_rugosa	Rorug07G0312600
rosa_samantha	Rh7AG467500 Rh7BG438200 Rh7CG485500 Rh7DG454000
rosa_wichuraiana	Rw7G038820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	392
AccB7I	CCANNNNNTGG	1 cut(s)	543
AccBSI	CCGCTC	1 cut(s)	158
AciI	CCGC	4 cut(s)	156, 426, 487, 737
AclWI	GGATC	6 cut(s)	310, 561, 574, 705, 909, 922
AcsI	RAATTY	1 cut(s)	150
AfaI	GTAC	5 cut(s)	119, 132, 333, 703, 785
AfiI	CCNNNNNNNGG	1 cut(s)	543
AgsI	TTSAA	6 cut(s)	20, 139, 245, 513, 732, 1024
AjnI	CCWGG	1 cut(s)	410
AluBI	AGCT	7 cut(s)	219, 557, 725, 802, 833, 894, 934
AluI	AGCT	7 cut(s)	219, 557, 725, 802, 833, 894, 934
Alw21I	GWGCWC	1 cut(s)	347
Alw26I	GTCTC	3 cut(s)	149, 378, 814
AlwI	GGATC	6 cut(s)	310, 561, 574, 705, 909, 922
Ama87I	CYCGRG	2 cut(s)	298, 846
AoxI	GGCC	4 cut(s)	29, 193, 534, 734
ApeKI	GCWGC	3 cut(s)	268, 671, 694
ApoI	RAATTY	1 cut(s)	150
AspS9I	GGNCC	2 cut(s)	534, 657
AsuC2I	CCSGG	2 cut(s)	299, 300
AsuHPI	GGTGA	2 cut(s)	166, 196
AvaI	CYCGRG	2 cut(s)	298, 846
AvaII	GGWCC	1 cut(s)	657
BaeI	ACNNNNGTAYC	2 cut(s)	439, 472
BamHI	GGATCC	2 cut(s)	566, 914
BarI	GAAGNNNNNNTAC	2 cut(s)	203, 235
Bbv12I	GWGCWC	1 cut(s)	347
BbvI	GCAGC	3 cut(s)	280, 683, 706
BccI	CCATC	2 cut(s)	534, 648
BceAI	ACGGC	1 cut(s)	474
BcgI	CGANNNNNNTGC	2 cut(s)	663, 697
BciT130I	CCWGG	1 cut(s)	412
BcnI	CCSGG	2 cut(s)	299, 300
BcoDI	GTCTC	3 cut(s)	149, 378, 814
BfaI	CTAG	2 cut(s)	360, 726
BglI	GCCNNNNNGGC	1 cut(s)	378
BisI	GCNGC	4 cut(s)	269, 672, 695, 737
BlsI	GCNGC	4 cut(s)	270, 673, 696, 738
Bme1390I	CCNGG	3 cut(s)	299, 300, 412
Bme18I	GGWCC	1 cut(s)	657
BmeT110I	CYCGRG	2 cut(s)	298, 846
BmgT120I	GGNCC	2 cut(s)	534, 657
BmiI	GGNNCC	2 cut(s)	568, 916
BmrFI	CCNGG	3 cut(s)	299, 300, 412
BmsI	GCATC	3 cut(s)	97, 174, 689
Bpu10I	CCTNAGC	1 cut(s)	346
BpuEI	CTTGAG	1 cut(s)	646
BpuMI	CCSGG	2 cut(s)	299, 300
BsaI	GGTCTC	1 cut(s)	378
BsaJI	CCNNGG	3 cut(s)	12, 298, 938
Bsc4I	CCNNNNNNNGG	1 cut(s)	543
Bse118I	RCCGGY	2 cut(s)	195, 739
Bse1I	ACTGG	4 cut(s)	382, 392, 455, 904
Bse3DI	GCAATG	1 cut(s)	635
BseBI	CCWGG	1 cut(s)	412
BseDI	CCNNGG	3 cut(s)	12, 298, 938
BseLI	CCNNNNNNNGG	1 cut(s)	543
BseMI	GCAATG	1 cut(s)	635
BseMII	CTCAG	4 cut(s)	204, 360, 544, 990
BseNI	ACTGG	4 cut(s)	382, 392, 455, 904
BseXI	GCAGC	3 cut(s)	280, 683, 706
BseYI	CCCAGC	1 cut(s)	428
BshFI	GGCC	4 cut(s)	31, 195, 536, 736
BsiHKAI	GWGCWC	1 cut(s)	347
BsiHKCI	CYCGRG	2 cut(s)	298, 846
BsiSI	CCGG	3 cut(s)	196, 299, 740
BsiWI	CGTACG	1 cut(s)	331
BslFI	GGGAC	1 cut(s)	535
BslI	CCNNNNNNNGG	1 cut(s)	543
BsmAI	GTCTC	3 cut(s)	149, 378, 814
BsmFI	GGGAC	1 cut(s)	535
BsnI	GGCC	4 cut(s)	31, 195, 536, 736
Bso31I	GGTCTC	1 cut(s)	378
BsoBI	CYCGRG	2 cut(s)	298, 846
Bsp1286I	GDGCHC	1 cut(s)	347
Bsp143I	GATC	6 cut(s)	99, 302, 566, 710, 854, 914
Bsp19I	CCATGG	1 cut(s)	12
BspACI	CCGC	4 cut(s)	156, 426, 487, 737
BspANI	GGCC	4 cut(s)	31, 195, 536, 736
BspCNI	CTCAG	4 cut(s)	203, 359, 545, 991
BspLI	GGNNCC	2 cut(s)	568, 916
BspPI	GGATC	6 cut(s)	310, 561, 574, 705, 909, 922
BspTNI	GGTCTC	1 cut(s)	378
BsrBI	CCGCTC	1 cut(s)	158
BsrDI	GCAATG	1 cut(s)	635
BsrFI	RCCGGY	2 cut(s)	195, 739
BsrI	ACTGG	4 cut(s)	382, 392, 455, 904
BssAI	RCCGGY	2 cut(s)	195, 739
BssECI	CCNNGG	3 cut(s)	12, 298, 938
BssMI	GATC	6 cut(s)	99, 302, 566, 710, 854, 914
BssT1I	CCWWGG	1 cut(s)	12
Bst2UI	CCWGG	1 cut(s)	412
Bst4CI	ACNGT	6 cut(s)	55, 208, 336, 526, 648, 939
Bst6I	CTCTTC	1 cut(s)	508
BstC8I	GCNNGC	3 cut(s)	481, 559, 804
BstDEI	CTNAG	4 cut(s)	190, 346, 553, 999
BstDSI	CCRYGG	2 cut(s)	12, 938
BstEII	GGTNACC	1 cut(s)	642
BstKTI	GATC	6 cut(s)	102, 305, 569, 713, 857, 917
BstMAI	GTCTC	3 cut(s)	149, 378, 814
BstMBI	GATC	6 cut(s)	99, 302, 566, 710, 854, 914
BstMWI	GCNNNNNNNGC	3 cut(s)	378, 677, 891
BstNI	CCWGG	1 cut(s)	412
BstPI	GGTNACC	1 cut(s)	642
BstSCI	CCNGG	3 cut(s)	297, 298, 410
BstV1I	GCAGC	3 cut(s)	280, 683, 706
BstX2I	RGATCY	3 cut(s)	566, 710, 914
BstXI	CCANNNNNNTGG	1 cut(s)	911
BstYI	RGATCY	3 cut(s)	566, 710, 914
BsuRI	GGCC	4 cut(s)	31, 195, 536, 736
BtgI	CCRYGG	2 cut(s)	12, 938
BtsIMutI	CAGTG	1 cut(s)	911
Cac8I	GCNNGC	3 cut(s)	481, 559, 804
Cfr10I	RCCGGY	2 cut(s)	195, 739
Cfr13I	GGNCC	2 cut(s)	534, 657
Cfr9I	CCCGGG	1 cut(s)	298
Csp6I	GTAC	5 cut(s)	118, 131, 332, 702, 784
CviAII	CATG	4 cut(s)	13, 306, 311, 397
CviQI	GTAC	5 cut(s)	118, 131, 332, 702, 784
DdeI	CTNAG	4 cut(s)	190, 346, 553, 999
DpnI	GATC	6 cut(s)	101, 304, 568, 712, 856, 916
DpnII	GATC	6 cut(s)	99, 302, 566, 710, 854, 914
DrdI	GACNNNNNNGTC	1 cut(s)	392
DseDI	GACNNNNNNGTC	1 cut(s)	392
Eam1104I	CTCTTC	1 cut(s)	508
EarI	CTCTTC	1 cut(s)	508
Eco130I	CCWWGG	1 cut(s)	12
Eco31I	GGTCTC	1 cut(s)	378
Eco47I	GGWCC	1 cut(s)	657
Eco88I	CYCGRG	2 cut(s)	298, 846
Eco91I	GGTNACC	1 cut(s)	642
EcoO65I	GGTNACC	1 cut(s)	642
EcoRII	CCWGG	1 cut(s)	410
EcoT14I	CCWWGG	1 cut(s)	12
EcoT22I	ATGCAT	1 cut(s)	316
ErhI	CCWWGG	1 cut(s)	12
FaeI	CATG	4 cut(s)	16, 309, 314, 400
FaqI	GGGAC	1 cut(s)	535
FatI	CATG	4 cut(s)	12, 305, 310, 396
FauI	CCCGC	1 cut(s)	163
FauNDI	CATATG	1 cut(s)	603
Fnu4HI	GCNGC	4 cut(s)	269, 672, 695, 737
Fsp4HI	GCNGC	4 cut(s)	269, 672, 695, 737
FspBI	CTAG	2 cut(s)	360, 726
GluI	GCNGC	4 cut(s)	269, 672, 695, 737
GsaI	CCCAGC	1 cut(s)	432
HaeIII	GGCC	4 cut(s)	31, 195, 536, 736
HapII	CCGG	3 cut(s)	196, 299, 740
Hin1II	CATG	4 cut(s)	16, 309, 314, 400
HindIII	AAGCTT	1 cut(s)	831
HinfI	GANTC	4 cut(s)	20, 135, 753, 900
HpaII	CCGG	3 cut(s)	196, 299, 740
HphI	GGTGA	2 cut(s)	166, 196
Hpy166II	GTNNAC	1 cut(s)	255
Hpy188I	TCNGA	3 cut(s)	82, 440, 946
Hpy188III	TCNNGA	5 cut(s)	93, 231, 757, 912, 918
Hpy8I	GTNNAC	1 cut(s)	255
Hpy99I	CGWCG	1 cut(s)	266
HpyAV	CCTTC	1 cut(s)	726
HpyCH4III	ACNGT	6 cut(s)	55, 208, 336, 526, 648, 939
HpyCH4V	TGCA	5 cut(s)	165, 314, 502, 885, 1017
HpyF10VI	GCNNNNNNNGC	3 cut(s)	378, 677, 891
HpyF3I	CTNAG	4 cut(s)	190, 346, 553, 999
Hsp92II	CATG	4 cut(s)	16, 309, 314, 400
Kzo9I	GATC	6 cut(s)	99, 302, 566, 710, 854, 914
LmnI	GCTCC	1 cut(s)	115
Lsp1109I	GCAGC	3 cut(s)	280, 683, 706
LweI	GCATC	3 cut(s)	97, 174, 689
MaeI	CTAG	2 cut(s)	360, 726
MaeIII	GTNAC	2 cut(s)	491, 642
MalI	GATC	6 cut(s)	101, 304, 568, 712, 856, 916
MbiI	CCGCTC	1 cut(s)	158
MboI	GATC	6 cut(s)	99, 302, 566, 710, 854, 914
MboII	GAAGA	2 cut(s)	378, 525
MflI	RGATCY	3 cut(s)	566, 710, 914
MhlI	GDGCHC	1 cut(s)	347
MluCI	AATT	3 cut(s)	150, 458, 1018
MnlI	CCTC	6 cut(s)	356, 434, 511, 525, 670, 1050
Mph1103I	ATGCAT	1 cut(s)	316
MseI	TTAA	2 cut(s)	505, 1053
MspA1I	CMGCKG	2 cut(s)	428, 894
MspI	CCGG	3 cut(s)	196, 299, 740
MspR9I	CCNGG	3 cut(s)	299, 300, 412
MvaI	CCWGG	1 cut(s)	412
MwoI	GCNNNNNNNGC	3 cut(s)	378, 677, 891
NciI	CCSGG	2 cut(s)	299, 300
NcoI	CCATGG	1 cut(s)	12
NdeI	CATATG	1 cut(s)	603
NdeII	GATC	6 cut(s)	99, 302, 566, 710, 854, 914
NlaIII	CATG	4 cut(s)	16, 309, 314, 400
NlaIV	GGNNCC	2 cut(s)	568, 916
NmuCI	GTSAC	1 cut(s)	491
NsiI	ATGCAT	1 cut(s)	316
PcsI	WCGNNNNNNNCGW	2 cut(s)	327, 487
PfeI	GAWTC	4 cut(s)	20, 135, 753, 900
Pfl23II	CGTACG	1 cut(s)	331
PflMI	CCANNNNNTGG	1 cut(s)	543
PkrI	GCNGC	4 cut(s)	270, 673, 696, 738
Psp6I	CCWGG	1 cut(s)	410
PspEI	GGTNACC	1 cut(s)	642
PspFI	CCCAGC	1 cut(s)	428
PspGI	CCWGG	1 cut(s)	410
PspLI	CGTACG	1 cut(s)	331
PspN4I	GGNNCC	2 cut(s)	568, 916
PspPI	GGNCC	2 cut(s)	534, 657
PsuI	RGATCY	3 cut(s)	566, 710, 914
PvuII	CAGCTG	1 cut(s)	894
RsaI	GTAC	5 cut(s)	119, 132, 333, 703, 785
RsaNI	GTAC	5 cut(s)	118, 131, 332, 702, 784
SaqAI	TTAA	2 cut(s)	505, 1053
SatI	GCNGC	4 cut(s)	269, 672, 695, 737
Sau3AI	GATC	6 cut(s)	99, 302, 566, 710, 854, 914
Sau96I	GGNCC	2 cut(s)	534, 657
ScrFI	CCNGG	3 cut(s)	299, 300, 412
SduI	GDGCHC	1 cut(s)	347
SfaNI	GCATC	3 cut(s)	97, 174, 689
SinI	GGWCC	1 cut(s)	657
SmaI	CCCGGG	1 cut(s)	300
SmlI	CTYRAG	1 cut(s)	661
SmoI	CTYRAG	1 cut(s)	661
Sse9I	AATT	3 cut(s)	150, 458, 1018
SsiI	CCGC	4 cut(s)	156, 426, 487, 737
SspMI	CTAG	2 cut(s)	360, 726
StyD4I	CCNGG	3 cut(s)	297, 298, 410
StyI	CCWWGG	1 cut(s)	12
TaaI	ACNGT	6 cut(s)	55, 208, 336, 526, 648, 939
TaqI	TCGA	2 cut(s)	92, 183
TasI	AATT	3 cut(s)	150, 458, 1018
TatI	WGTACW	1 cut(s)	701
TauI	GCSGC	1 cut(s)	739
TfiI	GAWTC	4 cut(s)	20, 135, 753, 900
Tru1I	TTAA	2 cut(s)	505, 1053
Tru9I	TTAA	2 cut(s)	505, 1053
TscAI	CASTG	1 cut(s)	911
TseFI	GTSAC	1 cut(s)	491
TseI	GCWGC	3 cut(s)	268, 671, 694
Tsp45I	GTSAC	1 cut(s)	491
TspDTI	ATGAA	6 cut(s)	63, 883, 888, 913, 981, 991
TspGWI	ACGGA	1 cut(s)	1021
TspMI	CCCGGG	1 cut(s)	298
TspRI	CASTG	1 cut(s)	911
Van91I	CCANNNNNTGG	1 cut(s)	543
VpaK11BI	GGWCC	1 cut(s)	657
XapI	RAATTY	1 cut(s)	150
XmaI	CCCGGG	1 cut(s)	298
XspI	CTAG	2 cut(s)	360, 726
Zsp2I	ATGCAT	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.