Rorug07G0312700

FAM91 N-terminus

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0004069
Physical Location & Seq
Reverse (-)
31365841 .. 31368440
2600 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0312700.1

Sequence Viewer

Length: 465 bp
ATGTATATAGAAGGTTCTCACCCAAAATATAAAGAAGCTCATTTTTGTGCTGCTGTAGGTGGAGCTGGGAGTAGCACAGCAGGTCGAAAAGGCATGGCTGATGCTCTAGCAGATATGAAAAAAGATGGTGCTTCACCTTCTGAAGGCCATCCTACAGTTAACCTAAAGAACAAACCTACTAAAGATGTCCACAAACATCCAGACACATCAAAACCAGCGTGGCTTTTGGCTTTGGAAATATTGGATTGGGGTGAGAACAATATTGCCATTGCTGCTGCAACTACTGCTCCTGGGGCGTTGTTTCAGCAAGTTGTTGTTGTTTGGCATAAGCTTGACCATCCAGATATTTCGAAGTTAAAAGTTATATCTATTGAATTTTCATATCAGAATTTTGTTGGAGCTTCAATGGGAAGTTCGAATCTTAAAATCATTGCCAAAGGCACATCAAGTGGTGGTCAGTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAM91_C FAM91_N

Protein Analysis

154

Amino Acids

16.25

Weight (kDa)

8.63

Isoelectric Point (pI)

30.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 71
AcsI RAATTY 2 cut(s) 374, 388
AcuI CTGAAG 1 cut(s) 162
AfiI CCNNNNNNNGG 1 cut(s) 143
AgsI TTSAA 2 cut(s) 374, 405
AjnI CCWGG 1 cut(s) 289
AluBI AGCT 4 cut(s) 38, 65, 331, 401
AluI AGCT 4 cut(s) 38, 65, 331, 401
AoxI GGCC 1 cut(s) 145
ApeKI GCWGC 3 cut(s) 50, 272, 275
ApoI RAATTY 2 cut(s) 374, 388
AsuHPI GGTGA 3 cut(s) 11, 126, 263
AsuII TTCGAA 2 cut(s) 350, 416
BbvI GCAGC 3 cut(s) 37, 259, 262
BccI CCATC 3 cut(s) 119, 156, 345
BciT130I CCWGG 1 cut(s) 291
BfaI CTAG 1 cut(s) 107
BfmI CTRYAG 2 cut(s) 54, 153
BfuAI ACCTGC 1 cut(s) 71
BisI GCNGC 3 cut(s) 51, 273, 276
BlsI GCNGC 3 cut(s) 52, 274, 277
Bme1390I CCNGG 1 cut(s) 291
BmrFI CCNGG 1 cut(s) 291
BmsI GCATC 1 cut(s) 91
Bpu14I TTCGAA 2 cut(s) 350, 416
BsaJI CCNNGG 1 cut(s) 290
BsaXI ACNNNNNCTCC 2 cut(s) 271, 301
Bsc4I CCNNNNNNNGG 1 cut(s) 143
Bse3DI GCAATG 2 cut(s) 267, 429
BseBI CCWGG 1 cut(s) 291
BseDI CCNNGG 1 cut(s) 290
BseGI GGATG 3 cut(s) 148, 196, 337
BseLI CCNNNNNNNGG 1 cut(s) 143
BseMI GCAATG 2 cut(s) 267, 429
BseXI GCAGC 3 cut(s) 37, 259, 262
BseYI CCCAGC 1 cut(s) 65
BshFI GGCC 1 cut(s) 147
BslI CCNNNNNNNGG 1 cut(s) 143
BsnI GGCC 1 cut(s) 147
Bsp119I TTCGAA 2 cut(s) 350, 416
BspANI GGCC 1 cut(s) 147
BspMI ACCTGC 1 cut(s) 71
BspT104I TTCGAA 2 cut(s) 350, 416
BsrDI GCAATG 2 cut(s) 267, 429
BssECI CCNNGG 1 cut(s) 290
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 1 cut(s) 157
BstAPI GCANNNNNTGC 1 cut(s) 284
BstBI TTCGAA 2 cut(s) 350, 416
BstENI CCTNNNNNAGG 1 cut(s) 141
BstF5I GGATG 3 cut(s) 148, 196, 337
BstMWI GCNNNNNNNGC 3 cut(s) 272, 284, 293
BstNI CCWGG 1 cut(s) 291
BstSCI CCNGG 1 cut(s) 289
BstSFI CTRYAG 2 cut(s) 54, 153
BstV1I GCAGC 3 cut(s) 37, 259, 262
BsuRI GGCC 1 cut(s) 147
BtsCI GGATG 3 cut(s) 148, 196, 337
BveI ACCTGC 1 cut(s) 71
CviAII CATG 1 cut(s) 94
CviJI RGCY 8 cut(s) 38, 65, 98, 147, 223, 230, 331, 401
CviKI_1 RGCY 8 cut(s) 38, 65, 98, 147, 223, 230, 331, 401
Eco57I CTGAAG 1 cut(s) 162
EcoNI CCTNNNNNAGG 1 cut(s) 141
EcoRII CCWGG 1 cut(s) 289
FaeI CATG 1 cut(s) 97
FaiI YATR 9 cut(s) 6, 8, 30, 95, 116, 327, 365, 382, 463
FatI CATG 1 cut(s) 93
Fnu4HI GCNGC 3 cut(s) 51, 273, 276
FokI GGATG 3 cut(s) 135, 183, 324
Fsp4HI GCNGC 3 cut(s) 51, 273, 276
FspBI CTAG 1 cut(s) 107
GluI GCNGC 3 cut(s) 51, 273, 276
GsaI CCCAGC 1 cut(s) 69
HaeIII GGCC 1 cut(s) 147
Hin1II CATG 1 cut(s) 97
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HindIII AAGCTT 1 cut(s) 329
HinfI GANTC 1 cut(s) 418
HpaI GTTAAC 1 cut(s) 160
HphI GGTGA 3 cut(s) 11, 126, 263
Hpy166II GTNNAC 2 cut(s) 160, 190
Hpy188I TCNGA 2 cut(s) 142, 387
Hpy188III TCNNGA 2 cut(s) 200, 341
Hpy8I GTNNAC 2 cut(s) 160, 190
HpyAV CCTTC 3 cut(s) 5, 137, 147
HpyCH4III ACNGT 1 cut(s) 157
HpyCH4V TGCA 1 cut(s) 278
HpyF10VI GCNNNNNNNGC 3 cut(s) 272, 284, 293
Hsp92II CATG 1 cut(s) 97
KspAI GTTAAC 1 cut(s) 160
LmnI GCTCC 3 cut(s) 62, 292, 398
LpnPI CCDG 7 cut(s) 51, 66, 213, 228, 276, 303, 354
Lsp1109I GCAGC 3 cut(s) 37, 259, 262
LweI GCATC 1 cut(s) 91
MaeI CTAG 1 cut(s) 107
MluCI AATT 2 cut(s) 374, 388
MmeI TCCRAC 1 cut(s) 376
MseI TTAA 3 cut(s) 159, 356, 423
MslI CAYNNNNRTG 1 cut(s) 45
MspR9I CCNGG 1 cut(s) 291
MvaI CCWGG 1 cut(s) 291
MwoI GCNNNNNNNGC 3 cut(s) 272, 284, 293
NlaIII CATG 1 cut(s) 97
NspV TTCGAA 2 cut(s) 350, 416
PfeI GAWTC 1 cut(s) 418
PkrI GCNGC 3 cut(s) 52, 274, 277
Psp6I CCWGG 1 cut(s) 289
PspFI CCCAGC 1 cut(s) 65
PspGI CCWGG 1 cut(s) 289
RseI CAYNNNNRTG 1 cut(s) 45
SaqAI TTAA 3 cut(s) 159, 356, 423
SatI GCNGC 3 cut(s) 51, 273, 276
ScrFI CCNGG 1 cut(s) 291
SfaNI GCATC 1 cut(s) 91
SfcI CTRYAG 2 cut(s) 54, 153
SfuI TTCGAA 2 cut(s) 350, 416
SmiMI CAYNNNNRTG 1 cut(s) 45
Sse9I AATT 2 cut(s) 374, 388
SspI AATATT 2 cut(s) 240, 262
SspMI CTAG 1 cut(s) 107
StyD4I CCNGG 1 cut(s) 289
TaaI ACNGT 1 cut(s) 157
TaqI TCGA 3 cut(s) 85, 350, 416
TasI AATT 2 cut(s) 374, 388
TfiI GAWTC 1 cut(s) 418
Tru1I TTAA 3 cut(s) 159, 356, 423
Tru9I TTAA 3 cut(s) 159, 356, 423
TseI GCWGC 3 cut(s) 50, 272, 275
TspDTI ATGAA 2 cut(s) 131, 369
XagI CCTNNNNNAGG 1 cut(s) 141
XapI RAATTY 2 cut(s) 374, 388
XspI CTAG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.