Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0004069

Physical Location & Seq

Genomic Coordinates Forward (+)

31369657 .. 31373334

Gene Structure 3678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0312800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGAGGTTGACGTTGATCGGAGATCGCAAATAGTGGAGGAGCTGGAGTCGACTGACCTGCCCGTTTTGCCGCTGCATTCTCTTTGGCTTTTTACCTGCTTGCCCCAACAGGTGTACGTCTTCATTGGCGTTCGAGGCTTTCCGCGTGGCTCTGTTTCCTTGCTCCACGAAGAGAGAACAATCCAAAGAGAAATCAAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAGCGTGCCATCGCTGTTGAGGCCAAAGAACAAGTCTCCTAGGGCAAAACCATTTGGATTATGCGGACCAAGAGAAAAAGAGAACAGGGGAAGAAGGGAAAAAAGAAGAAATTCAGAGGAAGAAAGAAAAGGGGATAGAGGAAGAACAAAAGAAGGAAAAGAAGTGACTCTCCCTCTCTGGCGAGCCATATCCTTAATGGCCTTAAATGATCTGGCCAACTATTTTTTCTTCACTGGTCAACACTCTGTAGTTGAGCAACTAACTGAGACAGCACTTGCTATCACCAACCATGGACCAACAAGGTCACATTCCTACTACAGTTTAGCACGATCTTACCATAGCAAGGTTGAAGATACCTATCTAAAACAGGTTTTAGGTTCTTCGATAGGAATCAAGTCTGCCACATTATGCAAGCAAGAGCGATTGGAGTTCCTCTATGATTCGAGATTGGCCGTAGGGCGCCCCGGTGGCTCTGATAATTTCAAGGAAGCTTTCACCAAAGCCGAAAAACCGTCTTCTTTCTCCGCCACCGCCACTGCAAAAGAGGCGTCATCATCTGTGCCGGGGTTGGTGGTGGGGATAACAACGGAGGATCAGATAATGGAGCAGCCTTTAATGAAGGATTTGGCGATGAATATCAGTAGGAAGTACGAAAATGAATCAGGTTCTGTTATAAGCATATTAGTTCTGCTAATATTTCTCACGCTTCCTGCCAGTATTCATAAAGTACTTGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAM91_C FAM91_N

Protein Analysis

320

Amino Acids

36.16

Weight (kDa)

9.31

Isoelectric Point (pI)

49.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35220 AT1G35220 AT1G35220 AT1G35220 AT1G35220 AT1G35220 AT1G35220
fragaria_vesca	FvH4_5g36450 FvH4_5g36450 FvH4_5g36450 FvH4_5g36450 FvH4_5g36450 FvH4_5g36450 FvH4_5g36450
malus_domestica	MD08G1188800.v1.1 MD15G1376600.v1.1 MD15G1376700.v1.1
prunus_persica	Prupe.1G523400_v2.0.a1
pyrus_communis	pycom08g16250
rosa_chinensis	RchiOBHm_Chr7g0238491
rosa_laevigata	RLG00000000910
rosa_multiflora	Rmu_sc0001536.1_g000012 Rmu_sc0025040.1_g000006
rosa_roxburghii	Rroxscaffold_3G00223010 Rroxscaffold_3G00223110
rosa_rugosa	Rorug07G0312600 Rorug07G0312700 Rorug07G0312800
rosa_samantha	Rh7AG467600 Rh7BG438300 Rh7CG485600 Rh7DG454100
rosa_wichuraiana	Rw7G038830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	899
Acc36I	ACCTGC	2 cut(s)	66, 104
AccB1I	GGYRCC	1 cut(s)	684
AccI	GTMKAC	1 cut(s)	50
AccII	CGCG	1 cut(s)	145
AciI	CCGC	5 cut(s)	71, 143, 288, 750, 756
AclWI	GGATC	1 cut(s)	825
AcoI	YGGCCR	2 cut(s)	438, 675
AcsI	RAATTY	1 cut(s)	334
AcyI	GRCGYC	2 cut(s)	685, 773
AfaI	GTAC	3 cut(s)	116, 875, 954
AfiI	CCNNNNNNNGG	1 cut(s)	568
AgsI	TTSAA	2 cut(s)	575, 709
AjuI	GAANNNNNNNTTGG	2 cut(s)	434, 466
AluBI	AGCT	2 cut(s)	43, 716
AluI	AGCT	2 cut(s)	43, 716
Alw26I	GTCTC	2 cut(s)	264, 485
AlwI	GGATC	1 cut(s)	825
AlwNI	CAGNNNCTG	1 cut(s)	893
AoxI	GGCC	4 cut(s)	245, 423, 438, 675
ApeKI	GCWGC	2 cut(s)	73, 832
ApoI	RAATTY	1 cut(s)	334
ArsI	GACNNNNNNTTYG	4 cut(s)	242, 274, 758, 790
Asp700I	GAANNNNTTC	1 cut(s)	334
AspA2I	CCTAGG	1 cut(s)	263
AspLEI	GCGC	1 cut(s)	687
AspS9I	GGNCC	2 cut(s)	290, 518
AsuC2I	CCSGG	2 cut(s)	690, 789
AsuHPI	GGTGA	2 cut(s)	499, 712
AvaII	GGWCC	2 cut(s)	290, 518
AvrII	CCTAGG	1 cut(s)	263
BalI	TGGCCA	1 cut(s)	440
BanI	GGYRCC	1 cut(s)	684
BbsI	GAAGAC	2 cut(s)	112, 732
BbvI	GCAGC	2 cut(s)	60, 844
BccI	CCATC	1 cut(s)	241
BceAI	ACGGC	1 cut(s)	662
BcgI	CGANNNNNNTGC	2 cut(s)	40, 74
BcnI	CCSGG	2 cut(s)	690, 789
BcoDI	GTCTC	2 cut(s)	264, 485
BfaI	CTAG	1 cut(s)	264
BfmI	CTRYAG	2 cut(s)	471, 541
BfoI	RGCGCY	1 cut(s)	688
BfuAI	ACCTGC	2 cut(s)	66, 104
BglI	GCCNNNNNGGC	1 cut(s)	693
BisI	GCNGC	3 cut(s)	71, 74, 833
BlnI	CCTAGG	1 cut(s)	263
BlsI	GCNGC	3 cut(s)	72, 75, 834
BmcAI	AGTACT	1 cut(s)	954
Bme1390I	CCNGG	2 cut(s)	690, 789
Bme18I	GGWCC	2 cut(s)	290, 518
BmgT120I	GGNCC	2 cut(s)	290, 518
BmiI	GGNNCC	1 cut(s)	686
BmrFI	CCNGG	2 cut(s)	690, 789
BpiI	GAAGAC	2 cut(s)	112, 732
BpmI	CTGGAG	1 cut(s)	65
BpuMI	CCSGG	2 cut(s)	690, 789
BsaBI	GATNNNNATC	3 cut(s)	582, 614, 860
BsaHI	GRCGYC	2 cut(s)	685, 773
BsaJI	CCNNGG	4 cut(s)	263, 514, 688, 788
BsaXI	ACNNNNNCTCC	2 cut(s)	32, 62
Bsc4I	CCNNNNNNNGG	1 cut(s)	568
Bse1I	ACTGG	2 cut(s)	463, 939
Bse8I	GATNNNNATC	3 cut(s)	582, 614, 860
BseDI	CCNNGG	4 cut(s)	263, 514, 688, 788
BseJI	GATNNNNATC	3 cut(s)	582, 614, 860
BseLI	CCNNNNNNNGG	1 cut(s)	568
BseMII	CTCAG	1 cut(s)	480
BseNI	ACTGG	2 cut(s)	463, 939
BseRI	GAGGAG	1 cut(s)	53
BseXI	GCAGC	2 cut(s)	60, 844
Bsh1236I	CGCG	1 cut(s)	145
BshFI	GGCC	4 cut(s)	247, 425, 440, 677
BshNI	GGYRCC	1 cut(s)	684
BsiSI	CCGG	2 cut(s)	690, 788
BslI	CCNNNNNNNGG	1 cut(s)	568
BsmAI	GTCTC	2 cut(s)	264, 485
BsmI	GAATGC	1 cut(s)	76
BsnI	GGCC	4 cut(s)	247, 425, 440, 677
Bsp143I	GATC	5 cut(s)	16, 23, 433, 554, 817
Bsp19I	CCATGG	1 cut(s)	514
BspACI	CCGC	5 cut(s)	71, 143, 288, 750, 756
BspANI	GGCC	4 cut(s)	247, 425, 440, 677
BspCNI	CTCAG	1 cut(s)	481
BspFNI	CGCG	1 cut(s)	145
BspLI	GGNNCC	1 cut(s)	686
BspMI	ACCTGC	2 cut(s)	66, 104
BspPI	GGATC	1 cut(s)	825
BspQI	GCTCTTC	1 cut(s)	218
BspT107I	GGYRCC	1 cut(s)	684
BsrI	ACTGG	2 cut(s)	463, 939
BssECI	CCNNGG	4 cut(s)	263, 514, 688, 788
BssMI	GATC	5 cut(s)	16, 23, 433, 554, 817
BssNI	GRCGYC	2 cut(s)	685, 773
BssT1I	CCWWGG	2 cut(s)	263, 514
Bst4CI	ACNGT	2 cut(s)	545, 738
Bst6I	CTCTTC	2 cut(s)	165, 218
BstACI	GRCGYC	2 cut(s)	685, 773
BstC8I	GCNNGC	4 cut(s)	101, 230, 408, 638
BstDEI	CTNAG	1 cut(s)	489
BstDSI	CCRYGG	1 cut(s)	514
BstFNI	CGCG	1 cut(s)	145
BstH2I	RGCGCY	1 cut(s)	688
BstHHI	GCGC	1 cut(s)	687
BstKTI	GATC	5 cut(s)	19, 26, 436, 557, 820
BstMAI	GTCTC	2 cut(s)	264, 485
BstMBI	GATC	5 cut(s)	16, 23, 433, 554, 817
BstMWI	GCNNNNNNNGC	5 cut(s)	67, 135, 244, 693, 770
BstSCI	CCNGG	2 cut(s)	688, 787
BstSFI	CTRYAG	2 cut(s)	471, 541
BstUI	CGCG	1 cut(s)	145
BstV1I	GCAGC	2 cut(s)	60, 844
BstV2I	GAAGAC	2 cut(s)	112, 732
BsuRI	GGCC	4 cut(s)	247, 425, 440, 677
BtgI	CCRYGG	1 cut(s)	514
BtgZI	GCGATG	2 cut(s)	219, 869
BtsI	GCAGTG	1 cut(s)	759
BtsIMutI	CAGTG	2 cut(s)	456, 759
BveI	ACCTGC	2 cut(s)	66, 104
Cac8I	GCNNGC	4 cut(s)	101, 230, 408, 638
CaiI	CAGNNNCTG	1 cut(s)	893
CfoI	GCGC	1 cut(s)	687
Cfr13I	GGNCC	2 cut(s)	290, 518
CseI	GACGC	1 cut(s)	762
Csp6I	GTAC	3 cut(s)	115, 874, 953
CviAII	CATG	1 cut(s)	515
CviQI	GTAC	3 cut(s)	115, 874, 953
DdeI	CTNAG	1 cut(s)	489
DinI	GGCGCC	1 cut(s)	686
DpnI	GATC	5 cut(s)	18, 25, 435, 556, 819
DpnII	GATC	5 cut(s)	16, 23, 433, 554, 817
EaeI	YGGCCR	2 cut(s)	438, 675
Eam1104I	CTCTTC	2 cut(s)	165, 218
EarI	CTCTTC	2 cut(s)	165, 218
EciI	GGCGGA	1 cut(s)	739
Eco130I	CCWWGG	2 cut(s)	263, 514
Eco47I	GGWCC	2 cut(s)	290, 518
EcoT14I	CCWWGG	2 cut(s)	263, 514
EgeI	GGCGCC	1 cut(s)	686
EheI	GGCGCC	1 cut(s)	686
ErhI	CCWWGG	2 cut(s)	263, 514
FaeI	CATG	1 cut(s)	518
FaiI	YATR	9 cut(s)	286, 413, 516, 564, 634, 663, 899, 905, 948
FatI	CATG	1 cut(s)	514
FblI	GTMKAC	1 cut(s)	50
Fnu4HI	GCNGC	3 cut(s)	71, 74, 833
Fsp4HI	GCNGC	3 cut(s)	71, 74, 833
FspBI	CTAG	1 cut(s)	264
GlaI	GCGC	1 cut(s)	686
GluI	GCNGC	3 cut(s)	71, 74, 833
GsuI	CTGGAG	1 cut(s)	65
HaeII	RGCGCY	1 cut(s)	688
HaeIII	GGCC	4 cut(s)	247, 425, 440, 677
HapII	CCGG	2 cut(s)	690, 788
HgaI	GACGC	1 cut(s)	762
HhaI	GCGC	1 cut(s)	687
Hin1I	GRCGYC	2 cut(s)	685, 773
Hin1II	CATG	1 cut(s)	518
Hin6I	GCGC	1 cut(s)	685
HinP1I	GCGC	1 cut(s)	685
HincII	GTYRAC	3 cut(s)	10, 51, 464
HindII	GTYRAC	3 cut(s)	10, 51, 464
HindIII	AAGCTT	1 cut(s)	714
HinfI	GANTC	5 cut(s)	47, 391, 615, 665, 884
HpaII	CCGG	2 cut(s)	690, 788
HphI	GGTGA	2 cut(s)	499, 712
Hpy166II	GTNNAC	4 cut(s)	10, 51, 115, 464
Hpy188I	TCNGA	4 cut(s)	21, 340, 700, 822
Hpy188III	TCNNGA	2 cut(s)	196, 669
Hpy8I	GTNNAC	4 cut(s)	10, 51, 115, 464
HpyAV	CCTTC	3 cut(s)	312, 371, 838
HpyCH4III	ACNGT	2 cut(s)	545, 738
HpyCH4IV	ACGT	2 cut(s)	12, 117
HpyCH4V	TGCA	3 cut(s)	76, 636, 764
HpyF10VI	GCNNNNNNNGC	5 cut(s)	67, 135, 244, 693, 770
HpyF3I	CTNAG	1 cut(s)	489
HpySE526I	ACGT	2 cut(s)	12, 117
Hsp92I	GRCGYC	2 cut(s)	685, 773
Hsp92II	CATG	1 cut(s)	518
HspAI	GCGC	1 cut(s)	685
KasI	GGCGCC	1 cut(s)	684
Kzo9I	GATC	5 cut(s)	16, 23, 433, 554, 817
LguI	GCTCTTC	1 cut(s)	218
LmnI	GCTCC	3 cut(s)	40, 168, 829
Lsp1109I	GCAGC	2 cut(s)	60, 844
MaeI	CTAG	1 cut(s)	264
MaeII	ACGT	2 cut(s)	12, 117
MaeIII	GTNAC	2 cut(s)	388, 528
MalI	GATC	5 cut(s)	18, 25, 435, 556, 819
MboI	GATC	5 cut(s)	16, 23, 433, 554, 817
MlsI	TGGCCA	1 cut(s)	440
MluCI	AATT	2 cut(s)	334, 703
MluNI	TGGCCA	1 cut(s)	440
Mly113I	GGCGCC	1 cut(s)	685
MlyI	GAGTC	2 cut(s)	56, 385
MnlI	CCTC	9 cut(s)	31, 128, 237, 334, 356, 408, 668, 763, 808
Mox20I	TGGCCA	1 cut(s)	440
MroXI	GAANNNNTTC	1 cut(s)	334
MscI	TGGCCA	1 cut(s)	440
MseI	TTAA	3 cut(s)	419, 428, 839
Msp20I	TGGCCA	1 cut(s)	440
MspA1I	CMGCKG	1 cut(s)	73
MspI	CCGG	2 cut(s)	690, 788
MspR9I	CCNGG	2 cut(s)	690, 789
Mva1269I	GAATGC	1 cut(s)	76
MvnI	CGCG	1 cut(s)	145
MwoI	GCNNNNNNNGC	5 cut(s)	67, 135, 244, 693, 770
NarI	GGCGCC	1 cut(s)	685
NciI	CCSGG	2 cut(s)	690, 789
NcoI	CCATGG	1 cut(s)	514
NdeII	GATC	5 cut(s)	16, 23, 433, 554, 817
NlaIII	CATG	1 cut(s)	518
NlaIV	GGNNCC	1 cut(s)	686
NmuCI	GTSAC	2 cut(s)	388, 528
PciSI	GCTCTTC	1 cut(s)	218
PctI	GAATGC	1 cut(s)	76
PdmI	GAANNNNTTC	1 cut(s)	334
PfeI	GAWTC	3 cut(s)	615, 665, 884
PkrI	GCNGC	3 cut(s)	72, 75, 834
PleI	GAGTC	2 cut(s)	55, 385
PluTI	GGCGCC	1 cut(s)	688
PpsI	GAGTC	2 cut(s)	55, 385
PsiI	TTATAA	1 cut(s)	899
PspN4I	GGNNCC	1 cut(s)	686
PspPI	GGNCC	2 cut(s)	290, 518
PstNI	CAGNNNCTG	1 cut(s)	893
RsaI	GTAC	3 cut(s)	116, 875, 954
RsaNI	GTAC	3 cut(s)	115, 874, 953
SalI	GTCGAC	1 cut(s)	49
SapI	GCTCTTC	1 cut(s)	218
SaqAI	TTAA	3 cut(s)	419, 428, 839
SatI	GCNGC	3 cut(s)	71, 74, 833
Sau3AI	GATC	5 cut(s)	16, 23, 433, 554, 817
Sau96I	GGNCC	2 cut(s)	290, 518
ScaI	AGTACT	1 cut(s)	954
SchI	GAGTC	2 cut(s)	56, 385
ScrFI	CCNGG	2 cut(s)	690, 789
SfcI	CTRYAG	2 cut(s)	471, 541
SfoI	GGCGCC	1 cut(s)	686
SinI	GGWCC	2 cut(s)	290, 518
Sse9I	AATT	2 cut(s)	334, 703
SsiI	CCGC	5 cut(s)	71, 143, 288, 750, 756
SspDI	GGCGCC	1 cut(s)	684
SspI	AATATT	1 cut(s)	921
SspMI	CTAG	1 cut(s)	264
StyD4I	CCNGG	2 cut(s)	688, 787
StyI	CCWWGG	2 cut(s)	263, 514
TaaI	ACNGT	2 cut(s)	545, 738
TaiI	ACGT	2 cut(s)	15, 120
TaqI	TCGA	4 cut(s)	50, 133, 608, 668
TasI	AATT	2 cut(s)	334, 703
TatI	WGTACW	1 cut(s)	952
TauI	GCSGC	1 cut(s)	73
TfiI	GAWTC	3 cut(s)	615, 665, 884
Tru1I	TTAA	3 cut(s)	419, 428, 839
Tru9I	TTAA	3 cut(s)	419, 428, 839
TscAI	CASTG	2 cut(s)	463, 766
TseFI	GTSAC	2 cut(s)	388, 528
TseI	GCWGC	2 cut(s)	73, 832
Tsp45I	GTSAC	2 cut(s)	388, 528
TspDTI	ATGAA	5 cut(s)	112, 857, 872, 897, 935
TspGWI	ACGGA	1 cut(s)	827
TspRI	CASTG	2 cut(s)	463, 766
VpaK11BI	GGWCC	2 cut(s)	290, 518
XapI	RAATTY	1 cut(s)	334
XcmI	CCANNNNNNNNNTGG	1 cut(s)	418
XmaJI	CCTAGG	1 cut(s)	263
XmiI	GTMKAC	1 cut(s)	50
XmnI	GAANNNNTTC	1 cut(s)	334
XspI	CTAG	1 cut(s)	264
ZrmI	AGTACT	1 cut(s)	954

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.