Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0004069

Physical Location & Seq

Genomic Coordinates Forward (+)

6148071 .. 6157219

Gene Structure 9149 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00223010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2949 bp

ATGCATCACGCTCCGGCGACGATCGAGGAACAGTTGCTGCTGAAAGCAATTAAAGAAGAATGCCCCTGGGAGAGTCTACCGAAACGGCTCCAAGCGACGTTGTCTTCGAAAGAAGAGTGGCACAGAAGGGTGATTGAGCACTGCATAAAGAAAAGACTGCAATGGAGCAGTTGCTTTGCTCGAAAAATGTGCAAGGAAAGTGAATATTATGAAGACATGATGCGGTACTTGCGAAGGAATCTAGCGCTGTTTCCCTATCACCTTGCAGAGTATGTTTGCCGTGTAATGAGGGTATCACCTTTCCGATACTACTGTGATATGATTTTCGAAGTTATGAAAAATGAGCAACCGTATGATAGCATCCCCAATTTTAGTGCGGCAGATGCCTTGAGACTTACAGGGATCGGAAGAAACGAATTTATTGATATAATGAACAAGTGCAGATCTAAGAAAATTATGTGGAAGCTGAACAAGTCAATTGCAAAGGAACTTTTACCTACACAACCTGTGGATTTTGCTATTGAACCGTGGTGGGGAATTTGTCTAGTGAATTTTACACTGGAAGAATTTAAGAAACTTTCAGAGGAAGAAATGGCTACGATAGATAAAGTATGTAAAGAGGAAGCAAATTCTTATATCCTATTCGATCCTGATATTATTAAGGGTCTTCATCAACGAGGATTAATATACTTTGATGTTCCTGTGTATCCCGATGATCGTTTTAAAGTTTCCAGGCTTGAAGGATTTGTTTCCAACAGAGAGCAATCTTATGAAGATCCTATAGAGGAGATACTATATGCAGTATTTGTTGTTTCAAGTGAGAATGCAACTGTCGCTGAGCTGGCATCAACATTACAGGCTGACCTTGCACAGCTGCAGGCTGCTGCATCTTTTGCATGTCGATTGGGATGGGCCGTAAAAGTATTTGACCCAGCATCTGTTCTTCAAGATGCAGGTTTACCGGGATCTCCCAGAAACAGTCTTAGTGATGAAGATTCATCTCATCGTAGTACGGTTTCAAGGAATATGTTTGCTGATGGTGATGCTACTATACAAGGTGATGCTTCAGGGAGAGAAAACTATGGGCCAGTTTCTTCACAGGATCGTGTTGCATTTGTTGTTGATGCTAACATAACATCCTATCTTATGATGGGGTCTGTTTCACCAGGTCTGAAATCTCATGCTGTGACGCTATACGAAGCGGGAAAGTTGGGTCATGCTAGCATTACAGATCTTTGCAAGGATCTTAGTACGCTAGAGGGCACCAAATTTGAAGGAGAACTGCAGGAATTTGCAAATCATGCATTTAGCCTCCGTTGTGTTTTGGAATGCCTTCAATCAGGAGGAGTTGCAACTGATGTGAAAGCTGATGAAGTTTGCAATATGAAGGATATGATAAATTTCAATGATGATGAAGCTGCGATCATACCTAACATCCCTCTGACTAACCAATCAGGAGACCTTAGTACGCATGAAGACACAATTGATGATGACGGTTCTAAGAAATTAGGGATGCCCCAGGACAGTTCCGTTTTGGTCGAACATGTTAATAATATTACAAGTGAGGAAGTAATGATTGGTACTTCATCAGAAGATAGCACTTGCTTAAATGAAGTCTCTAAATCATATTCTAATCTTCAAAGTTGTGAGAAACTGATGCCTGATGAAGGTTCAGATGTTGGAGGAGAACTGTTTAAGAGGAAAAAGAAATTCCGAGTGGATATCCTTCGCTGTGAAAGCTTGGCGTCCCTTGCACCAGCCACTTTAGATCGGTTGCTTCGTCGTGACTATGATATTGTTGTGTCTATGGTTCCTCTTCCGCCGTCGTCAGTACTTCCTGGACCTACAGGTCCTATTAATTTTGGTCCACCCTCTTATTCATCAATGACTCCTTGGATGAAAATAGTATTGTACTCAACTTTGGGCTGTGGACCTCTATCGGTTATTCTGATGAAGGGACAATGCTTACGCTTACTTCCTGCACCACTAGCTGGTTGTGAAAAAGCCCTTTTATGGTCTTGGGATGGTTCTACAGTTGGAGGGTTGGGAGGCAAGTTTGAAGGAAATCTAGTAAAGGGAAATATACTTCTACATTGCTTAAATTCAATTCTTAAATTCTCTGCTGTACTAGTCCAGCCCCTCAGTAGGTATGACCTCGATGAATCAGGAAAAATTGTTACTATGGATATTCCATTACCGCTGAAGAACTCTGATGGTTCAATTGAATGTATGGGGAAGGAATTGGGACTGTCTGAAAAGGAAGCTTCAGAACTGGATTCTATGTTAACTGCTTTGGCAAACAAGATAGAATTGTGGACAGTTGGCTATATTCGCGTATTGAAACTTTTCAGAGAAAGAGATTCAGACCACTTTGCACCTGATGATGAGAAATATGAATGGGTCCCGTTAAGTGTGGAATTTGGGATGCCACTATTTAATCCAAAATTGTGCAATAATATTTGCAAAAGAGTGGTATCATCACAATTACTTCAAAAGGATTTATTTACCAAGCATCATGATGCAATGCAAGGGTTACGGAAAAGGTTACGTGATGTTTGTACAGAGTACCAAGCAACAGGTGCTGCTGCAAAACTTCTTTACCAGAAAGAGCAACCAAAGGACTTCTCACGGCATCTCATGAATTATGCGAGTGGAAGATGGAATCCTCTTATAGACCCTTCTTCTCCGATTTCAGGAGCCTCGAGTGATCATCAGAGACTAAAACTAGCTAGTCGACATCGTTCCCGAACTGAAGTTTTGAGCTTTGATGGAAGCATTCTAAGATCATATGCTCTATCTCCTGTTTATGAGGCTGCCACAAGGCCAGTAGAAGAATCCACTTCAGTGAGCACTCCAAAAGTTGAGCAAGAAGAATCTGACAGCAAAGACGTCGTCCTTCCTGGTGTTAATCTTCTTTTGATGGCTCAGAGTTGCACCCCTTTGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAM91_C FAM91_N

Protein Analysis

982

Amino Acids

109.7

Weight (kDa)

5.37

Isoelectric Point (pI)

56.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAM91_N	PF14647	17 - 307	1.6e-92	FAM91 N-terminus
FAM91_C	PF14648	367 - 461	3.1e-21	FAM91 C-terminus
FAM91_C	PF14648	568 - 789	8.2e-33	FAM91 C-terminus
FAM91_C	PF14648	794 - 870	3.7e-10	FAM91 C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35220 AT1G35220 AT1G35220 AT1G35220 AT1G35220 AT1G35220 AT1G35220
fragaria_vesca	FvH4_5g36450 FvH4_5g36450 FvH4_5g36450 FvH4_5g36450 FvH4_5g36450 FvH4_5g36450 FvH4_5g36450
malus_domestica	MD08G1188800.v1.1 MD15G1376600.v1.1 MD15G1376700.v1.1
prunus_persica	Prupe.1G523400_v2.0.a1
pyrus_communis	pycom08g16250
rosa_chinensis	RchiOBHm_Chr7g0238491
rosa_laevigata	RLG00000000910
rosa_multiflora	Rmu_sc0001536.1_g000012 Rmu_sc0025040.1_g000006
rosa_roxburghii	Rroxscaffold_3G00223010 Rroxscaffold_3G00223110
rosa_rugosa	Rorug07G0312600 Rorug07G0312700 Rorug07G0312800
rosa_samantha	Rh7AG467600 Rh7BG438300 Rh7CG485600 Rh7DG454100
rosa_wichuraiana	Rw7G038830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1848
AatII	GACGTC	1 cut(s)	2892
Acc36I	ACCTGC	1 cut(s)	944
AccB1I	GGYRCC	1 cut(s)	1262
AccB7I	CCANNNNNTGG	1 cut(s)	1991
AccI	GTMKAC	2 cut(s)	76, 2734
AccII	CGCG	1 cut(s)	2334
AciI	CCGC	5 cut(s)	223, 377, 1202, 1820, 2198
AclWI	GGATC	6 cut(s)	410, 641, 770, 973, 1110, 1251
AcuI	CTGAAG	5 cut(s)	1050, 2222, 2250, 2772, 2826
AcyI	GRCGYC	2 cut(s)	1745, 2889
AfeI	AGCGCT	1 cut(s)	246
AfiI	CCNNNNNNNGG	6 cut(s)	533, 1667, 1991, 2013, 2145, 2693
AflIII	ACRYGT	1 cut(s)	1543
AhlI	ACTAGT	1 cut(s)	2128
AjnI	CCWGG	6 cut(s)	65, 731, 1165, 1518, 1837, 2899
AjuI	GAANNNNNNNTTGG	2 cut(s)	1560, 1592
AleI	CACNNNNGTG	1 cut(s)	2843
Alw21I	GWGCWC	2 cut(s)	141, 2852
Alw26I	GTCTC	4 cut(s)	385, 1452, 1621, 2710
AlwI	GGATC	6 cut(s)	410, 641, 770, 973, 1110, 1251
AlwNI	CAGNNNCTG	3 cut(s)	37, 938, 2582
Ama87I	CYCGRG	1 cut(s)	2701
Aor51HI	AGCGCT	1 cut(s)	246
AoxI	GGCC	3 cut(s)	912, 1085, 2822
ApeKI	GCWGC	8 cut(s)	37, 874, 881, 884, 1418, 2582, 2585, 2813
ArsI	GACNNNNNNTTYG	4 cut(s)	88, 120, 2877, 2909
AseI	ATTAAT	2 cut(s)	683, 1857
Asp700I	GAANNNNTTC	2 cut(s)	1332, 2345
AspLEI	GCGC	1 cut(s)	247
AspS9I	GGNCC	7 cut(s)	912, 1085, 1841, 1850, 1865, 1931, 2401
AsuC2I	CCSGG	1 cut(s)	963
AsuHPI	GGTGA	6 cut(s)	142, 251, 288, 1052, 1070, 1155
AsuII	TTCGAA	2 cut(s)	107, 327
AsuNHI	GCTAGC	1 cut(s)	1220
AvaI	CYCGRG	1 cut(s)	2701
AvaII	GGWCC	5 cut(s)	1841, 1850, 1865, 1931, 2401
BaeGI	GKGCMC	1 cut(s)	1265
BaeI	ACNNNNGTAYC	2 cut(s)	298, 331
BanI	GGYRCC	1 cut(s)	1262
BbsI	GAAGAC	4 cut(s)	96, 219, 659, 1482
Bbv12I	GWGCWC	2 cut(s)	141, 2852
BbvI	GCAGC	8 cut(s)	24, 861, 868, 871, 1405, 2569, 2572, 2800
BccI	CCATC	8 cut(s)	903, 1031, 1144, 2018, 2207, 2652, 2762, 2914
BceAI	ACGGC	5 cut(s)	101, 264, 899, 1807, 2645
BcgI	CGANNNNNNTGC	4 cut(s)	171, 205, 2872, 2906
BciT130I	CCWGG	6 cut(s)	67, 733, 1167, 1520, 1839, 2901
BciVI	GTATCC	1 cut(s)	717
BclI	TGATCA	1 cut(s)	2707
BcnI	CCSGG	1 cut(s)	963
BcoDI	GTCTC	4 cut(s)	385, 1452, 1621, 2710
BcuI	ACTAGT	1 cut(s)	2128
BfaI	CTAG	9 cut(s)	242, 545, 1221, 1256, 1988, 2069, 2129, 2726, 2730
BfmI	CTRYAG	5 cut(s)	780, 875, 1283, 1845, 2031
BfoI	RGCGCY	1 cut(s)	248
BfuAI	ACCTGC	1 cut(s)	944
BfuI	GTATCC	1 cut(s)	717
BglII	AGATCT	2 cut(s)	443, 1231
BisI	GCNGC	9 cut(s)	38, 378, 875, 882, 885, 1419, 2583, 2586, 2814
BlpI	GCTNAGC	1 cut(s)	837
BlsI	GCNGC	9 cut(s)	39, 379, 876, 883, 886, 1420, 2584, 2587, 2815
BmcAI	AGTACT	1 cut(s)	1833
Bme1390I	CCNGG	7 cut(s)	67, 733, 963, 1167, 1520, 1839, 2901
Bme18I	GGWCC	5 cut(s)	1841, 1850, 1865, 1931, 2401
BmeT110I	CYCGRG	1 cut(s)	2701
BmgT120I	GGNCC	7 cut(s)	912, 1085, 1841, 1850, 1865, 1931, 2401
BmiI	GGNNCC	6 cut(s)	89, 1264, 1812, 2402, 2403, 2698
BmrFI	CCNGG	7 cut(s)	67, 733, 963, 1167, 1520, 1839, 2901
BmtI	GCTAGC	1 cut(s)	1224
BpiI	GAAGAC	4 cut(s)	96, 219, 659, 1482
Bpu1102I	GCTNAGC	1 cut(s)	837
Bpu14I	TTCGAA	2 cut(s)	107, 327
BpuEI	CTTGAG	1 cut(s)	409
BpuMI	CCSGG	1 cut(s)	963
BsaAI	YACGTR	1 cut(s)	2549
BsaHI	GRCGYC	2 cut(s)	1745, 2889
BsaI	GGTCTC	1 cut(s)	1452
BsaJI	CCNNGG	5 cut(s)	65, 66, 527, 1518, 1892
Bsc4I	CCNNNNNNNGG	6 cut(s)	533, 1667, 1991, 2013, 2145, 2693
Bse1I	ACTGG	4 cut(s)	564, 1088, 2277, 2825
Bse3DI	GCAATG	3 cut(s)	167, 2092, 2529
BseBI	CCWGG	6 cut(s)	67, 733, 1167, 1520, 1839, 2901
BseDI	CCNNGG	5 cut(s)	65, 66, 527, 1518, 1892
BseGI	GGATG	8 cut(s)	360, 914, 1136, 1434, 1518, 1902, 2029, 2430
BseLI	CCNNNNNNNGG	6 cut(s)	533, 1667, 1991, 2013, 2145, 2693
BseMI	GCAATG	3 cut(s)	167, 2092, 2529
BseMII	CTCAG	3 cut(s)	828, 2155, 2939
BseNI	ACTGG	4 cut(s)	564, 1088, 2277, 2825
BseRI	GAGGAG	3 cut(s)	800, 1359, 1698
BseSI	GKGCMC	1 cut(s)	1265
BseXI	GCAGC	8 cut(s)	24, 861, 868, 871, 1405, 2569, 2572, 2800
BseYI	CCCAGC	1 cut(s)	931
BsgI	GTGCAG	2 cut(s)	460, 1965
Bsh1236I	CGCG	1 cut(s)	2334
Bsh1285I	CGRYCG	1 cut(s)	24
BshFI	GGCC	3 cut(s)	914, 1087, 2824
BshNI	GGYRCC	1 cut(s)	1262
BsiEI	CGRYCG	1 cut(s)	24
BsiHKAI	GWGCWC	2 cut(s)	141, 2852
BsiHKCI	CYCGRG	1 cut(s)	2701
BsiSI	CCGG	2 cut(s)	14, 962
BslFI	GGGAC	4 cut(s)	1732, 1971, 2259, 2387
BslI	CCNNNNNNNGG	6 cut(s)	533, 1667, 1991, 2013, 2145, 2693
BsmAI	GTCTC	4 cut(s)	385, 1452, 1621, 2710
BsmFI	GGGAC	4 cut(s)	1732, 1971, 2259, 2387
BsmI	GAATGC	4 cut(s)	65, 829, 1334, 2775
BsnI	GGCC	3 cut(s)	914, 1087, 2824
Bso31I	GGTCTC	1 cut(s)	1452
BsoBI	CYCGRG	1 cut(s)	2701
Bsp119I	TTCGAA	2 cut(s)	107, 327
Bsp1286I	GDGCHC	3 cut(s)	141, 1265, 2852
Bsp1407I	TGTACA	1 cut(s)	2558
Bsp1720I	GCTNAGC	1 cut(s)	837
BspACI	CCGC	5 cut(s)	223, 377, 1202, 1820, 2198
BspANI	GGCC	3 cut(s)	914, 1087, 2824
BspCNI	CTCAG	3 cut(s)	829, 2154, 2938
BspFNI	CGCG	1 cut(s)	2334
BspHI	TCATGA	2 cut(s)	2515, 2637
BspLI	GGNNCC	6 cut(s)	89, 1264, 1812, 2402, 2403, 2698
BspMAI	CTGCAG	2 cut(s)	879, 1287
BspMI	ACCTGC	1 cut(s)	944
BspOI	GCTAGC	1 cut(s)	1224
BspPI	GGATC	6 cut(s)	410, 641, 770, 973, 1110, 1251
BspT104I	TTCGAA	2 cut(s)	107, 327
BspT107I	GGYRCC	1 cut(s)	1262
BspTNI	GGTCTC	1 cut(s)	1452
BsrDI	GCAATG	3 cut(s)	167, 2092, 2529
BsrGI	TGTACA	1 cut(s)	2558
BsrI	ACTGG	4 cut(s)	564, 1088, 2277, 2825
BssECI	CCNNGG	5 cut(s)	65, 66, 527, 1518, 1892
BssNI	GRCGYC	2 cut(s)	1745, 2889
BssT1I	CCWWGG	1 cut(s)	1892
Bst2UI	CCWGG	6 cut(s)	67, 733, 1167, 1520, 1839, 2901
Bst6I	CTCTTC	2 cut(s)	108, 1821
BstACI	GRCGYC	2 cut(s)	1745, 2889
BstAPI	GCANNNNNTGC	3 cut(s)	893, 1301, 2579
BstAUI	TGTACA	1 cut(s)	2558
BstBAI	YACGTR	1 cut(s)	2549
BstBI	TTCGAA	2 cut(s)	107, 327
BstC8I	GCNNGC	3 cut(s)	843, 879, 1222
BstDEI	CTNAG	9 cut(s)	447, 837, 983, 1247, 1463, 1500, 2141, 2780, 2925
BstDSI	CCRYGG	1 cut(s)	527
BstENI	CCTNNNNNAGG	1 cut(s)	1665
BstF5I	GGATG	8 cut(s)	360, 914, 1136, 1434, 1518, 1902, 2029, 2430
BstFNI	CGCG	1 cut(s)	2334
BstH2I	RGCGCY	1 cut(s)	248
BstHHI	GCGC	1 cut(s)	247
BstMAI	GTCTC	4 cut(s)	385, 1452, 1621, 2710
BstMCI	CGRYCG	1 cut(s)	24
BstNI	CCWGG	6 cut(s)	67, 733, 1167, 1520, 1839, 2901
BstNSI	RCATGY	2 cut(s)	900, 1547
BstSCI	CCNGG	7 cut(s)	65, 731, 961, 1165, 1518, 1837, 2899
BstSFI	CTRYAG	5 cut(s)	780, 875, 1283, 1845, 2031
BstSLI	GKGCMC	1 cut(s)	1265
BstUI	CGCG	1 cut(s)	2334
BstV1I	GCAGC	8 cut(s)	24, 861, 868, 871, 1405, 2569, 2572, 2800
BstV2I	GAAGAC	4 cut(s)	96, 219, 659, 1482
BstX2I	RGATCY	5 cut(s)	443, 775, 965, 1231, 1243
BstYI	RGATCY	5 cut(s)	443, 775, 965, 1231, 1243
BsuI	GTATCC	1 cut(s)	717
BsuRI	GGCC	3 cut(s)	914, 1087, 2824
BtgI	CCRYGG	1 cut(s)	527
BtsCI	GGATG	8 cut(s)	360, 914, 1136, 1434, 1518, 1902, 2029, 2430
BtsI	GCAGTG	1 cut(s)	139
BtsIMutI	CAGTG	3 cut(s)	139, 557, 2850
BveI	ACCTGC	1 cut(s)	944
Cac8I	GCNNGC	3 cut(s)	843, 879, 1222
CaiI	CAGNNNCTG	3 cut(s)	37, 938, 2582
CciI	TCATGA	2 cut(s)	2515, 2637
CfoI	GCGC	1 cut(s)	247
Cfr13I	GGNCC	7 cut(s)	912, 1085, 1841, 1850, 1865, 1931, 2401
CseI	GACGC	2 cut(s)	1198, 1734
CsiI	ACCWGGT	1 cut(s)	1165
CviAII	CATG	9 cut(s)	217, 897, 1181, 1217, 1301, 1472, 1544, 2516, 2638
DdeI	CTNAG	9 cut(s)	447, 837, 983, 1247, 1463, 1500, 2141, 2780, 2925
DraI	TTTAAA	1 cut(s)	724
DrdI	GACNNNNNNGTC	1 cut(s)	1848
DseDI	GACNNNNNNGTC	1 cut(s)	1848
Eam1104I	CTCTTC	2 cut(s)	108, 1821
EarI	CTCTTC	2 cut(s)	108, 1821
EciI	GGCGGA	1 cut(s)	1809
Eco130I	CCWWGG	1 cut(s)	1892
Eco31I	GGTCTC	1 cut(s)	1452
Eco32I	GATATC	1 cut(s)	1723
Eco47I	GGWCC	5 cut(s)	1841, 1850, 1865, 1931, 2401
Eco47III	AGCGCT	1 cut(s)	246
Eco57I	CTGAAG	5 cut(s)	1050, 2222, 2250, 2772, 2826
Eco88I	CYCGRG	1 cut(s)	2701
EcoNI	CCTNNNNNAGG	1 cut(s)	1665
EcoO109I	RGGNCCY	2 cut(s)	1850, 2401
EcoRII	CCWGG	6 cut(s)	65, 731, 1165, 1518, 1837, 2899
EcoRV	GATATC	1 cut(s)	1723
EcoT14I	CCWWGG	1 cut(s)	1892
EcoT22I	ATGCAT	2 cut(s)	6, 1306
ErhI	CCWWGG	1 cut(s)	1892
FaeI	CATG	9 cut(s)	220, 900, 1184, 1220, 1304, 1475, 1547, 2519, 2641
FaqI	GGGAC	4 cut(s)	1732, 1971, 2259, 2387
FatI	CATG	9 cut(s)	216, 896, 1180, 1216, 1300, 1471, 1543, 2515, 2637
FauI	CCCGC	1 cut(s)	1195
FauNDI	CATATG	1 cut(s)	2788
FbaI	TGATCA	1 cut(s)	2707
FblI	GTMKAC	2 cut(s)	76, 2734
Fnu4HI	GCNGC	9 cut(s)	38, 378, 875, 882, 885, 1419, 2583, 2586, 2814
FokI	GGATG	8 cut(s)	347, 921, 1123, 1421, 1525, 1909, 2036, 2437
Fsp4HI	GCNGC	9 cut(s)	38, 378, 875, 882, 885, 1419, 2583, 2586, 2814
FspBI	CTAG	9 cut(s)	242, 545, 1221, 1256, 1988, 2069, 2129, 2726, 2730
GlaI	GCGC	1 cut(s)	246
GluI	GCNGC	9 cut(s)	38, 378, 875, 882, 885, 1419, 2583, 2586, 2814
GsaI	CCCAGC	1 cut(s)	935
HaeII	RGCGCY	1 cut(s)	248
HaeIII	GGCC	3 cut(s)	914, 1087, 2824
HapII	CCGG	2 cut(s)	14, 962
HgaI	GACGC	2 cut(s)	1198, 1734
HhaI	GCGC	1 cut(s)	247
Hin1I	GRCGYC	2 cut(s)	1745, 2889
Hin1II	CATG	9 cut(s)	220, 900, 1184, 1220, 1304, 1475, 1547, 2519, 2641
Hin6I	GCGC	1 cut(s)	245
HinP1I	GCGC	1 cut(s)	245
HincII	GTYRAC	2 cut(s)	2286, 2735
HindII	GTYRAC	2 cut(s)	2286, 2735
HindIII	AAGCTT	2 cut(s)	1738, 2262
HpaI	GTTAAC	1 cut(s)	2286
HpaII	CCGG	2 cut(s)	14, 962
HphI	GGTGA	6 cut(s)	142, 251, 288, 1052, 1070, 1155
Hpy166II	GTNNAC	7 cut(s)	77, 959, 1868, 1931, 2286, 2316, 2735
Hpy8I	GTNNAC	7 cut(s)	77, 959, 1868, 1931, 2286, 2316, 2735
Hpy99I	CGWCG	5 cut(s)	22, 100, 1785, 1828, 2894
HpyCH4IV	ACGT	3 cut(s)	98, 2548, 2889
HpyF3I	CTNAG	9 cut(s)	447, 837, 983, 1247, 1463, 1500, 2141, 2780, 2925
HpySE526I	ACGT	3 cut(s)	98, 2548, 2889
Hsp92I	GRCGYC	2 cut(s)	1745, 2889
Hsp92II	CATG	9 cut(s)	220, 900, 1184, 1220, 1304, 1475, 1547, 2519, 2641
HspAI	GCGC	1 cut(s)	245
KflI	GGGWCCC	1 cut(s)	2401
Ksp22I	TGATCA	1 cut(s)	2707
KspAI	GTTAAC	1 cut(s)	2286
LmnI	GCTCC	4 cut(s)	16, 93, 165, 2696
Lsp1109I	GCAGC	8 cut(s)	24, 861, 868, 871, 1405, 2569, 2572, 2800
MabI	ACCWGGT	1 cut(s)	1165
MaeI	CTAG	9 cut(s)	242, 545, 1221, 1256, 1988, 2069, 2129, 2726, 2730
MaeII	ACGT	3 cut(s)	98, 2548, 2889
MaeIII	GTNAC	5 cut(s)	1186, 1784, 2176, 2532, 2544
MfeI	CAATTG	3 cut(s)	477, 1482, 2220
MflI	RGATCY	5 cut(s)	443, 775, 965, 1231, 1243
MhlI	GDGCHC	3 cut(s)	141, 1265, 2852
MlyI	GAGTC	2 cut(s)	82, 1882
MmeI	TCCRAC	3 cut(s)	777, 1660, 2017
Mph1103I	ATGCAT	2 cut(s)	6, 1306
MroXI	GAANNNNTTC	2 cut(s)	1332, 2345
MslI	CAYNNNNRTG	2 cut(s)	2517, 2843
MspA1I	CMGCKG	2 cut(s)	874, 2200
MspI	CCGG	2 cut(s)	14, 962
MspR9I	CCNGG	7 cut(s)	67, 733, 963, 1167, 1520, 1839, 2901
MunI	CAATTG	3 cut(s)	477, 1482, 2220
Mva1269I	GAATGC	4 cut(s)	65, 829, 1334, 2775
MvaI	CCWGG	6 cut(s)	67, 733, 1167, 1520, 1839, 2901
MvnI	CGCG	1 cut(s)	2334
NciI	CCSGG	1 cut(s)	963
NdeI	CATATG	1 cut(s)	2788
NheI	GCTAGC	1 cut(s)	1220
NlaIII	CATG	9 cut(s)	220, 900, 1184, 1220, 1304, 1475, 1547, 2519, 2641
NlaIV	GGNNCC	6 cut(s)	89, 1264, 1812, 2402, 2403, 2698
NmuCI	GTSAC	2 cut(s)	1186, 1784
NsiI	ATGCAT	2 cut(s)	6, 1306
NspI	RCATGY	2 cut(s)	900, 1547
NspV	TTCGAA	2 cut(s)	107, 327
OliI	CACNNNNGTG	1 cut(s)	2843
PaeR7I	CTCGAG	1 cut(s)	2701
PagI	TCATGA	2 cut(s)	2515, 2637
PasI	CCCWGGG	1 cut(s)	66
PciI	ACATGT	1 cut(s)	1543
PcsI	WCGNNNNNNNCGW	3 cut(s)	104, 411, 1777
PctI	GAATGC	4 cut(s)	65, 829, 1334, 2775
PdmI	GAANNNNTTC	2 cut(s)	1332, 2345
PfeI	GAWTC	8 cut(s)	238, 995, 2162, 2276, 2360, 2662, 2834, 2873
PflFI	GACNNNGTC	2 cut(s)	100, 2891
PflMI	CCANNNNNTGG	1 cut(s)	1991
PfoI	TCCNGGA	1 cut(s)	1837
PkrI	GCNGC	9 cut(s)	39, 379, 876, 883, 886, 1420, 2584, 2587, 2815
Ple19I	CGATCG	1 cut(s)	24
PleI	GAGTC	2 cut(s)	81, 1882
PpsI	GAGTC	2 cut(s)	81, 1882
Ppu21I	YACGTR	1 cut(s)	2549
PpuMI	RGGWCCY	2 cut(s)	1850, 2401
PscI	ACATGT	1 cut(s)	1543
PshBI	ATTAAT	2 cut(s)	683, 1857
Psp5II	RGGWCCY	2 cut(s)	1850, 2401
Psp6I	CCWGG	6 cut(s)	65, 731, 1165, 1518, 1837, 2899
PspFI	CCCAGC	1 cut(s)	931
PspGI	CCWGG	6 cut(s)	65, 731, 1165, 1518, 1837, 2899
PspN4I	GGNNCC	6 cut(s)	89, 1264, 1812, 2402, 2403, 2698
PspPI	GGNCC	7 cut(s)	912, 1085, 1841, 1850, 1865, 1931, 2401
PspPPI	RGGWCCY	2 cut(s)	1850, 2401
PspXI	VCTCGAGB	1 cut(s)	2701
PstI	CTGCAG	2 cut(s)	879, 1287
PstNI	CAGNNNCTG	3 cut(s)	37, 938, 2582
PsuI	RGATCY	5 cut(s)	443, 775, 965, 1231, 1243
PsyI	GACNNNGTC	2 cut(s)	100, 2891
PvuI	CGATCG	1 cut(s)	24
PvuII	CAGCTG	1 cut(s)	874
RseI	CAYNNNNRTG	2 cut(s)	2517, 2843
SalI	GTCGAC	1 cut(s)	2733
SatI	GCNGC	9 cut(s)	38, 378, 875, 882, 885, 1419, 2583, 2586, 2814
Sau96I	GGNCC	7 cut(s)	912, 1085, 1841, 1850, 1865, 1931, 2401
ScaI	AGTACT	1 cut(s)	1833
SchI	GAGTC	2 cut(s)	82, 1882
ScrFI	CCNGG	7 cut(s)	67, 733, 963, 1167, 1520, 1839, 2901
SduI	GDGCHC	3 cut(s)	141, 1265, 2852
SexAI	ACCWGGT	1 cut(s)	1165
SfcI	CTRYAG	5 cut(s)	780, 875, 1283, 1845, 2031
Sfr274I	CTCGAG	1 cut(s)	2701
SfuI	TTCGAA	2 cut(s)	107, 327
SinI	GGWCC	5 cut(s)	1841, 1850, 1865, 1931, 2401
SlaI	CTCGAG	1 cut(s)	2701
SmiMI	CAYNNNNRTG	2 cut(s)	2517, 2843
SmlI	CTYRAG	2 cut(s)	388, 2701
SmoI	CTYRAG	2 cut(s)	388, 2701
SpeI	ACTAGT	1 cut(s)	2128
SsiI	CCGC	5 cut(s)	223, 377, 1202, 1820, 2198
SspI	AATATT	3 cut(s)	206, 1555, 2458
SspMI	CTAG	9 cut(s)	242, 545, 1221, 1256, 1988, 2069, 2129, 2726, 2730
StyD4I	CCNGG	7 cut(s)	65, 731, 961, 1165, 1518, 1837, 2899
StyI	CCWWGG	1 cut(s)	1892
TaiI	ACGT	3 cut(s)	101, 2551, 2892
TatI	WGTACW	4 cut(s)	1831, 1911, 2125, 2558
TauI	GCSGC	1 cut(s)	380
TfiI	GAWTC	8 cut(s)	238, 995, 2162, 2276, 2360, 2662, 2834, 2873
TscAI	CASTG	3 cut(s)	146, 564, 2850
TseFI	GTSAC	2 cut(s)	1186, 1784
TseI	GCWGC	8 cut(s)	37, 874, 881, 884, 1418, 2582, 2585, 2813
Tsp45I	GTSAC	2 cut(s)	1186, 1784
TspGWI	ACGGA	3 cut(s)	1304, 1519, 2551
TspRI	CASTG	3 cut(s)	146, 564, 2850
Tth111I	GACNNNGTC	2 cut(s)	100, 2891
Van91I	CCANNNNNTGG	1 cut(s)	1991
VpaK11BI	GGWCC	5 cut(s)	1841, 1850, 1865, 1931, 2401
VspI	ATTAAT	2 cut(s)	683, 1857
XagI	CCTNNNNNAGG	1 cut(s)	1665
XceI	RCATGY	2 cut(s)	900, 1547
XhoI	CTCGAG	1 cut(s)	2701
XmiI	GTMKAC	2 cut(s)	76, 2734
XmnI	GAANNNNTTC	2 cut(s)	1332, 2345
XspI	CTAG	9 cut(s)	242, 545, 1221, 1256, 1988, 2069, 2129, 2726, 2730
ZraI	GACGTC	1 cut(s)	2890
ZrmI	AGTACT	1 cut(s)	1833
Zsp2I	ATGCAT	2 cut(s)	6, 1306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.