Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0004069

Physical Location & Seq

Genomic Coordinates Forward (+)

7893286 .. 7900722

Gene Structure 7437 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000910

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3042 bp

ATGCATCACGCTCCGGCGACGATCGAGGAACAGTTGCTGCTGAAAGCAATCAAGGAAGAATGCCCCTGGGAGAGTCTACCGAAACGGCTCCAAGCGACGTTGTCTTCGAAAGAAGAGTGGCACAGAAGGGTGATTGAGCATTGCATAAAGAAAAGACTGCAATGGAGCAGTTGTTTTGCTCGAAAAATGTGCAAGGAAAGTGAATATTATGAAGACATGATGCGGTACTTGCGAAGGAATCTAGCGCTGTTTCCCTATCACCTTGCAGAGTATGTTTGTCGTGTAATGAGGGTATCACCTTTCCGATACTACTGCGATATGATTTTCGAAGTTATGAAAAATGAGCAACCGTATGATAGCATCCCCAATTTTAGTGCTGCAGATGCCTTGAGACTTACAGGGATCGGAAGAAACGAATTTATTGATATAATGAACAAGTGCAGATCTAAGAAAATTATGTGGAAGCTGAACAAGTCAATTGCAAAGGAACTTTTACCTACACAACCTGTGGATTTTGCTATTGAACCGTGGTGGGGAATTTGTCTAGTGAATTTTACACTGGAAGAATTTAAGAAACTTTCAGAGGAAGAAATGGCTACAATAGATAAAGTATGTAAAGAGGAAGCAAATTCTTATATCCTATTCGATCCTGATATTATTAAGGGTCTTCATCAACGAGGGTTAATATACTTTGATGTTCCTGTGTATCCCGATGATCGTTTTAAAGTTTCCAGGCTTGAAGGATTTGTTTCCAACAGAGAGCAATCTTATGAAGATCCTATAGAGGAGATACTATATGCAGTATTTGTTGTTTCAAGTGAGAATGCAACTGTCGCTGAGCTGGCATCAACATTACAGGCTGACCTTGCACAGCTGCAGGCTGCTGCATCTTTTGCATGTCGATTGGGATGGGCCGTAAAAGTATTTGACCCAGCATCTGTTCTTCAAGATGCAGGTTTACCGGGATCTCCTAGAAACAGTCTTAGTGATGAAGATCCATCTCATCGTAGTTCGGGCTCAAGGAATATGTTTGCTGATGGTGATGCTACTACACAAGGTGATGCTTCAGGGAGAGAAAACAATGGGCCAGTTTCTTCACAGGATCGTGTTGCATTTGTTGTTGATGCTAACATAACATCCTATCTTATGATGGGGTCTGTTTCACCAGGTCTGAAATCTCATGCTGTGACGCTATACGAAGCGGGAAAGTTGGGTCATGCTAGCATTACAGATCTTTGCAAGGATCTTAGTACGCTAGAGGGCACCAAATTTGAAGGAGAACTGCAGGAATTTGCAAATCATGCATTTAGCCTCCGATGTGTTTTGGAATGCCTTCAATCAGGAGGAGTTGCAACTGATGTGAAAGCTGATGAAGTTTGCAATATGAAGGATATGATAAATTTCAATGATGATGAGGCTGCGATCATACCTAACATCCCTCTGACTAACCAATCAGGAGACCTTAGTACGCATGAAGACGCAATTGATGATGATGGTTCTAAGAAATCAGGGATGCCCCAGGACAGTTCCGTTTTGGTTGAACATGCTAATAATATTACAAGTGAGGAAGTAATGATTGGTACTTCATCAGAAGATAGCACTTGCTTAAATGAAGTCTCTAAAGCAGATTCTAATCTTCAGAGTTGTGAGAAACTGATGCCTGATGAAGGTTCAGATGTTGGAGGAGAACTGTTTAAGAGGAAAAAGAAATTCCGAGTGGATATCCTTCGCTGTGAAAGCTTGGCATCCCTTGCACCAGCCACTTTAGATCGGTTGCTTCGTCGTGACTATGATATTGTTGTGTCTATGGTTCCTCTTCCGCCGTCGTCAGTACTTCCTGGACCTACAGGTCCTATTAATTTTGGTCCTCCCTCTTATTCATCGATGACTCCTTGGATGAAAATAGTATTGTACTCAACTTTGGGCTGTGGACCTCTATCTGTTATTCTGATGAAGGGACAATGCTTACGCTTACTTCCTGCGCCACTAGCTGGTTGTGAAAAAGCCCTTTTATGGTCTTGGGATGGTTCTACAGTTGGAGGGTTGGGAGGCAAGTTTGAAGGAAATCTAGTAAAGGGAAATATACTTCTACATTGCTTAAATTCAATTCTTAAATACTCTGCTGTACTAGTGCAGCCCCTCAGTAGGTATGACCTCGACGAATCAGGAAAAATTGTTACTATGGATATTCCATTACCGCTGAAGAACTCTGATGGTTCAATTGAATGTATGGGGAAGGAATTGGGACTATCTGAAAAGGAAGCTTCAGAACTGGATTCTATGTTAACTGCTTTGGCAAACAACATAGAATTGTGGACAGTTGGCTATATTCGCGTATTGAAACTTTTCAGAGAAAGAGATTCAGACCACTTTGCACCTGATGATGAGAAGTATGAATGGGTCCCGTTAACTGTGGAATTTGGGATGCCACTATTTAATCCAAAATTGTGCAATAATATTTGCAAAAGAGTGGTATCATCACAATTACTTCAAAAGGATTTATTTACCAAGCATCATGATGCAATGCAAGGCCTACGGAAAAGGTTACGTGATGTTTGTACAGAGTACCAAGCAACAGGTGCTGCTGCAAAACTTCTTTACCAGAAAGAGCAACCAAAGGACTTCTCACGGCATCTCATGAATTATGCGAGTGGAAGGTGGAATCCTCTTATAGACCCTTCTTCTCCAATTTCAGGAGCCTCGAGTGATCATCAGAGACTAAAACTAGCTAGTCGACATCGTTCCCGAACTGAAGTTTTGAGCTTTGATGGAAGCATTCTAAGATCATATGCTCTATCTCCTGTTTATGAGGCTGCCACAAGGCCAGTAGAAGAATCCACGTCAGTGAGCACTCCAAAAGTTGAGCAAGAAGAATCTGACAGCAAAGACGTCGTCCTTCCTGGTGTTAATCTTCTTTTTGATGGCTCAGAGTTGCACCCCTTTGAGATAGGTGCTTGTCTACAGGCGCGGCAACCAGTCTCATTAATAGCAGAGGCAGCAGCTGCTTCTGCATCTCTGCAACAAACTAGGGCTTCATCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAM91_C FAM91_N

Protein Analysis

1014

Amino Acids

112.57

Weight (kDa)

5.25

Isoelectric Point (pI)

57.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAM91_N	PF14647	17 - 307	1.6e-92	FAM91 N-terminus
FAM91_C	PF14648	367 - 461	3.2e-21	FAM91 C-terminus
FAM91_C	PF14648	568 - 789	4.4e-33	FAM91 C-terminus
FAM91_C	PF14648	794 - 870	4.7e-10	FAM91 C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35220 AT1G35220 AT1G35220 AT1G35220 AT1G35220 AT1G35220 AT1G35220
fragaria_vesca	FvH4_5g36450 FvH4_5g36450 FvH4_5g36450 FvH4_5g36450 FvH4_5g36450 FvH4_5g36450 FvH4_5g36450
malus_domestica	MD08G1188800.v1.1 MD15G1376600.v1.1 MD15G1376700.v1.1
prunus_persica	Prupe.1G523400_v2.0.a1
pyrus_communis	pycom08g16250
rosa_chinensis	RchiOBHm_Chr7g0238491
rosa_laevigata	RLG00000000910
rosa_multiflora	Rmu_sc0001536.1_g000012 Rmu_sc0025040.1_g000006
rosa_roxburghii	Rroxscaffold_3G00223010 Rroxscaffold_3G00223110
rosa_rugosa	Rorug07G0312600 Rorug07G0312700 Rorug07G0312800
rosa_samantha	Rh7AG467600 Rh7BG438300 Rh7CG485600 Rh7DG454100
rosa_wichuraiana	Rw7G038830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1848
AatII	GACGTC	1 cut(s)	2892
Acc36I	ACCTGC	1 cut(s)	944
AccB1I	GGYRCC	1 cut(s)	1262
AccB7I	CCANNNNNTGG	1 cut(s)	1991
AccI	GTMKAC	3 cut(s)	76, 2734, 2959
AccII	CGCG	2 cut(s)	2334, 2968
AciI	CCGC	5 cut(s)	223, 1202, 1820, 2198, 2968
AclWI	GGATC	7 cut(s)	410, 641, 770, 973, 989, 1110, 1251
AcuI	CTGAAG	5 cut(s)	1050, 1622, 2222, 2250, 2772
AcyI	GRCGYC	1 cut(s)	2889
AdeI	CACNNNGTG	1 cut(s)	1058
AfaI	GTAC	9 cut(s)	227, 1252, 1468, 1582, 1833, 1913, 2127, 2560, 2567
AfeI	AGCGCT	1 cut(s)	246
AfiI	CCNNNNNNNGG	6 cut(s)	533, 1667, 1991, 2013, 2145, 2693
AhlI	ACTAGT	1 cut(s)	2128
AjiI	CACGTC	1 cut(s)	2841
AjnI	CCWGG	6 cut(s)	65, 731, 1165, 1518, 1837, 2899
AjuI	GAANNNNNNNTTGG	2 cut(s)	1560, 1592
AleI	CACNNNNGTG	1 cut(s)	2843
Alw21I	GWGCWC	1 cut(s)	2852
Alw26I	GTCTC	5 cut(s)	385, 1452, 1621, 2710, 2983
AlwI	GGATC	7 cut(s)	410, 641, 770, 973, 989, 1110, 1251
AlwNI	CAGNNNCTG	4 cut(s)	37, 938, 2582, 3002
Ama87I	CYCGRG	1 cut(s)	2701
Aor51HI	AGCGCT	1 cut(s)	246
AoxI	GGCC	4 cut(s)	912, 1085, 2530, 2822
ArsI	GACNNNNNNTTYG	4 cut(s)	88, 120, 2877, 2909
AseI	ATTAAT	2 cut(s)	1857, 2984
Asp700I	GAANNNNTTC	2 cut(s)	1332, 2345
AspLEI	GCGC	3 cut(s)	247, 1984, 2968
AspS9I	GGNCC	7 cut(s)	912, 1085, 1841, 1850, 1865, 1931, 2401
AsuC2I	CCSGG	1 cut(s)	963
AsuHPI	GGTGA	6 cut(s)	142, 251, 288, 1052, 1070, 1155
AsuII	TTCGAA	2 cut(s)	107, 327
AsuNHI	GCTAGC	1 cut(s)	1220
AvaI	CYCGRG	1 cut(s)	2701
AvaII	GGWCC	5 cut(s)	1841, 1850, 1865, 1931, 2401
BaeGI	GKGCMC	1 cut(s)	1265
BanI	GGYRCC	1 cut(s)	1262
BanII	GRGCYC	1 cut(s)	1019
BbsI	GAAGAC	4 cut(s)	96, 219, 659, 1482
Bbv12I	GWGCWC	1 cut(s)	2852
BccI	CCATC	9 cut(s)	903, 1006, 1031, 1144, 1487, 2018, 2207, 2762, 2915
BceAI	ACGGC	4 cut(s)	101, 899, 1807, 2645
BcgI	CGANNNNNNTGC	6 cut(s)	171, 205, 294, 328, 2872, 2906
BciT130I	CCWGG	6 cut(s)	67, 733, 1167, 1520, 1839, 2901
BciVI	GTATCC	1 cut(s)	717
BclI	TGATCA	1 cut(s)	2707
BcnI	CCSGG	1 cut(s)	963
BcoDI	GTCTC	5 cut(s)	385, 1452, 1621, 2710, 2983
BcuI	ACTAGT	1 cut(s)	2128
BfmI	CTRYAG	7 cut(s)	378, 780, 875, 1283, 1845, 2031, 2960
BfoI	RGCGCY	1 cut(s)	248
BfuAI	ACCTGC	1 cut(s)	944
BfuI	GTATCC	1 cut(s)	717
BglII	AGATCT	2 cut(s)	443, 1231
BlpI	GCTNAGC	1 cut(s)	837
BmcAI	AGTACT	1 cut(s)	1833
Bme1390I	CCNGG	7 cut(s)	67, 733, 963, 1167, 1520, 1839, 2901
Bme18I	GGWCC	5 cut(s)	1841, 1850, 1865, 1931, 2401
BmeT110I	CYCGRG	1 cut(s)	2701
BmgBI	CACGTC	1 cut(s)	2841
BmgT120I	GGNCC	7 cut(s)	912, 1085, 1841, 1850, 1865, 1931, 2401
BmiI	GGNNCC	6 cut(s)	89, 1264, 1812, 2402, 2403, 2698
BmrFI	CCNGG	7 cut(s)	67, 733, 963, 1167, 1520, 1839, 2901
BmtI	GCTAGC	1 cut(s)	1224
BpiI	GAAGAC	4 cut(s)	96, 219, 659, 1482
Bpu1102I	GCTNAGC	1 cut(s)	837
Bpu14I	TTCGAA	2 cut(s)	107, 327
BpuEI	CTTGAG	2 cut(s)	409, 1003
BpuMI	CCSGG	1 cut(s)	963
Bsa29I	ATCGAT	1 cut(s)	1883
BsaAI	YACGTR	1 cut(s)	2549
BsaBI	GATNNNNATC	2 cut(s)	993, 1632
BsaHI	GRCGYC	1 cut(s)	2889
BsaI	GGTCTC	1 cut(s)	1452
BsaJI	CCNNGG	5 cut(s)	65, 66, 527, 1518, 1892
BsaXI	ACNNNNNCTCC	2 cut(s)	157, 187
Bsc4I	CCNNNNNNNGG	6 cut(s)	533, 1667, 1991, 2013, 2145, 2693
Bse1I	ACTGG	5 cut(s)	564, 1088, 2277, 2825, 2975
Bse3DI	GCAATG	4 cut(s)	139, 167, 2092, 2529
Bse8I	GATNNNNATC	2 cut(s)	993, 1632
BseBI	CCWGG	6 cut(s)	67, 733, 1167, 1520, 1839, 2901
BseCI	ATCGAT	1 cut(s)	1883
BseDI	CCNNGG	5 cut(s)	65, 66, 527, 1518, 1892
BseJI	GATNNNNATC	2 cut(s)	993, 1632
BseLI	CCNNNNNNNGG	6 cut(s)	533, 1667, 1991, 2013, 2145, 2693
BseMI	GCAATG	4 cut(s)	139, 167, 2092, 2529
BseMII	CTCAG	3 cut(s)	828, 2155, 2940
BseNI	ACTGG	5 cut(s)	564, 1088, 2277, 2825, 2975
BseRI	GAGGAG	3 cut(s)	800, 1359, 1698
BseSI	GKGCMC	1 cut(s)	1265
BseYI	CCCAGC	1 cut(s)	931
BsgI	GTGCAG	2 cut(s)	460, 2153
Bsh1236I	CGCG	2 cut(s)	2334, 2968
Bsh1285I	CGRYCG	1 cut(s)	24
BshFI	GGCC	4 cut(s)	914, 1087, 2532, 2824
BshNI	GGYRCC	1 cut(s)	1262
BshVI	ATCGAT	1 cut(s)	1883
BsiEI	CGRYCG	1 cut(s)	24
BsiHKAI	GWGCWC	1 cut(s)	2852
BsiHKCI	CYCGRG	1 cut(s)	2701
BsiSI	CCGG	2 cut(s)	14, 962
BslFI	GGGAC	3 cut(s)	1971, 2259, 2387
BslI	CCNNNNNNNGG	6 cut(s)	533, 1667, 1991, 2013, 2145, 2693
BsmAI	GTCTC	5 cut(s)	385, 1452, 1621, 2710, 2983
BsmFI	GGGAC	3 cut(s)	1971, 2259, 2387
BsmI	GAATGC	4 cut(s)	65, 829, 1334, 2775
BsnI	GGCC	4 cut(s)	914, 1087, 2532, 2824
Bso31I	GGTCTC	1 cut(s)	1452
BsoBI	CYCGRG	1 cut(s)	2701
Bsp119I	TTCGAA	2 cut(s)	107, 327
Bsp1286I	GDGCHC	3 cut(s)	1019, 1265, 2852
Bsp1407I	TGTACA	1 cut(s)	2558
Bsp1720I	GCTNAGC	1 cut(s)	837
BspACI	CCGC	5 cut(s)	223, 1202, 1820, 2198, 2968
BspANI	GGCC	4 cut(s)	914, 1087, 2532, 2824
BspCNI	CTCAG	3 cut(s)	829, 2154, 2939
BspDI	ATCGAT	1 cut(s)	1883
BspFNI	CGCG	2 cut(s)	2334, 2968
BspHI	TCATGA	2 cut(s)	2515, 2637
BspLI	GGNNCC	6 cut(s)	89, 1264, 1812, 2402, 2403, 2698
BspMAI	CTGCAG	3 cut(s)	382, 879, 1287
BspMI	ACCTGC	1 cut(s)	944
BspOI	GCTAGC	1 cut(s)	1224
BspPI	GGATC	7 cut(s)	410, 641, 770, 973, 989, 1110, 1251
BspT104I	TTCGAA	2 cut(s)	107, 327
BspT107I	GGYRCC	1 cut(s)	1262
BspTNI	GGTCTC	1 cut(s)	1452
BsrDI	GCAATG	4 cut(s)	139, 167, 2092, 2529
BsrGI	TGTACA	1 cut(s)	2558
BsrI	ACTGG	5 cut(s)	564, 1088, 2277, 2825, 2975
BssECI	CCNNGG	5 cut(s)	65, 66, 527, 1518, 1892
BssNI	GRCGYC	1 cut(s)	2889
BssT1I	CCWWGG	1 cut(s)	1892
Bst2UI	CCWGG	6 cut(s)	67, 733, 1167, 1520, 1839, 2901
Bst6I	CTCTTC	2 cut(s)	108, 1821
BstACI	GRCGYC	1 cut(s)	2889
BstAPI	GCANNNNNTGC	5 cut(s)	893, 1301, 1751, 2579, 3002
BstAUI	TGTACA	1 cut(s)	2558
BstBAI	YACGTR	1 cut(s)	2549
BstBI	TTCGAA	2 cut(s)	107, 327
BstC8I	GCNNGC	3 cut(s)	843, 879, 1222
BstDEI	CTNAG	9 cut(s)	447, 837, 983, 1247, 1463, 1500, 2141, 2780, 2926
BstDSI	CCRYGG	1 cut(s)	527
BstENI	CCTNNNNNAGG	1 cut(s)	1665
BstFNI	CGCG	2 cut(s)	2334, 2968
BstH2I	RGCGCY	1 cut(s)	248
BstHHI	GCGC	3 cut(s)	247, 1984, 2968
BstMAI	GTCTC	5 cut(s)	385, 1452, 1621, 2710, 2983
BstMCI	CGRYCG	1 cut(s)	24
BstNI	CCWGG	6 cut(s)	67, 733, 1167, 1520, 1839, 2901
BstNSI	RCATGY	2 cut(s)	900, 1547
BstSCI	CCNGG	7 cut(s)	65, 731, 961, 1165, 1518, 1837, 2899
BstSFI	CTRYAG	7 cut(s)	378, 780, 875, 1283, 1845, 2031, 2960
BstSLI	GKGCMC	1 cut(s)	1265
BstUI	CGCG	2 cut(s)	2334, 2968
BstV2I	GAAGAC	4 cut(s)	96, 219, 659, 1482
BstX2I	RGATCY	6 cut(s)	443, 775, 965, 994, 1231, 1243
BstYI	RGATCY	6 cut(s)	443, 775, 965, 994, 1231, 1243
Bsu15I	ATCGAT	1 cut(s)	1883
BsuI	GTATCC	1 cut(s)	717
BsuRI	GGCC	4 cut(s)	914, 1087, 2532, 2824
BsuTUI	ATCGAT	1 cut(s)	1883
BtgI	CCRYGG	1 cut(s)	527
BtrI	CACGTC	1 cut(s)	2841
BtsIMutI	CAGTG	2 cut(s)	557, 2850
BveI	ACCTGC	1 cut(s)	944
Cac8I	GCNNGC	3 cut(s)	843, 879, 1222
CaiI	CAGNNNCTG	4 cut(s)	37, 938, 2582, 3002
CciI	TCATGA	2 cut(s)	2515, 2637
CfoI	GCGC	3 cut(s)	247, 1984, 2968
Cfr13I	GGNCC	7 cut(s)	912, 1085, 1841, 1850, 1865, 1931, 2401
ClaI	ATCGAT	1 cut(s)	1883
CseI	GACGC	2 cut(s)	1198, 1487
CsiI	ACCWGGT	1 cut(s)	1165
Csp6I	GTAC	9 cut(s)	226, 1251, 1467, 1581, 1832, 1912, 2126, 2559, 2566
CviAII	CATG	9 cut(s)	217, 897, 1181, 1217, 1301, 1472, 1544, 2516, 2638
CviQI	GTAC	9 cut(s)	226, 1251, 1467, 1581, 1832, 1912, 2126, 2559, 2566
DdeI	CTNAG	9 cut(s)	447, 837, 983, 1247, 1463, 1500, 2141, 2780, 2926
DraI	TTTAAA	1 cut(s)	724
DraIII	CACNNNGTG	1 cut(s)	1058
DrdI	GACNNNNNNGTC	1 cut(s)	1848
DseDI	GACNNNNNNGTC	1 cut(s)	1848
Eam1104I	CTCTTC	2 cut(s)	108, 1821
EarI	CTCTTC	2 cut(s)	108, 1821
EciI	GGCGGA	1 cut(s)	1809
Eco130I	CCWWGG	1 cut(s)	1892
Eco147I	AGGCCT	1 cut(s)	2532
Eco24I	GRGCYC	1 cut(s)	1019
Eco31I	GGTCTC	1 cut(s)	1452
Eco32I	GATATC	1 cut(s)	1723
Eco47I	GGWCC	5 cut(s)	1841, 1850, 1865, 1931, 2401
Eco47III	AGCGCT	1 cut(s)	246
Eco57I	CTGAAG	5 cut(s)	1050, 1622, 2222, 2250, 2772
Eco88I	CYCGRG	1 cut(s)	2701
EcoNI	CCTNNNNNAGG	1 cut(s)	1665
EcoO109I	RGGNCCY	2 cut(s)	1850, 2401
EcoRII	CCWGG	6 cut(s)	65, 731, 1165, 1518, 1837, 2899
EcoRV	GATATC	1 cut(s)	1723
EcoT14I	CCWWGG	1 cut(s)	1892
EcoT22I	ATGCAT	2 cut(s)	6, 1306
EcoT38I	GRGCYC	1 cut(s)	1019
ErhI	CCWWGG	1 cut(s)	1892
FaeI	CATG	9 cut(s)	220, 900, 1184, 1220, 1304, 1475, 1547, 2519, 2641
FaqI	GGGAC	3 cut(s)	1971, 2259, 2387
FatI	CATG	9 cut(s)	216, 896, 1180, 1216, 1300, 1471, 1543, 2515, 2637
FauI	CCCGC	1 cut(s)	1195
FauNDI	CATATG	1 cut(s)	2788
FbaI	TGATCA	1 cut(s)	2707
FblI	GTMKAC	3 cut(s)	76, 2734, 2959
FriOI	GRGCYC	1 cut(s)	1019
GlaI	GCGC	3 cut(s)	246, 1983, 2967
GsaI	CCCAGC	1 cut(s)	935
HaeII	RGCGCY	1 cut(s)	248
HaeIII	GGCC	4 cut(s)	914, 1087, 2532, 2824
HapII	CCGG	2 cut(s)	14, 962
HgaI	GACGC	2 cut(s)	1198, 1487
HhaI	GCGC	3 cut(s)	247, 1984, 2968
Hin1I	GRCGYC	1 cut(s)	2889
Hin1II	CATG	9 cut(s)	220, 900, 1184, 1220, 1304, 1475, 1547, 2519, 2641
Hin6I	GCGC	3 cut(s)	245, 1982, 2966
HinP1I	GCGC	3 cut(s)	245, 1982, 2966
HincII	GTYRAC	3 cut(s)	2286, 2409, 2735
HindII	GTYRAC	3 cut(s)	2286, 2409, 2735
HindIII	AAGCTT	2 cut(s)	1738, 2262
HpaI	GTTAAC	2 cut(s)	2286, 2409
HpaII	CCGG	2 cut(s)	14, 962
HphI	GGTGA	6 cut(s)	142, 251, 288, 1052, 1070, 1155
Hpy166II	GTNNAC	8 cut(s)	77, 959, 1931, 2286, 2316, 2409, 2735, 2960
Hpy8I	GTNNAC	8 cut(s)	77, 959, 1931, 2286, 2316, 2409, 2735, 2960
Hpy99I	CGWCG	6 cut(s)	22, 100, 1785, 1828, 2162, 2894
HpyCH4IV	ACGT	4 cut(s)	98, 2548, 2840, 2889
HpyF3I	CTNAG	9 cut(s)	447, 837, 983, 1247, 1463, 1500, 2141, 2780, 2926
HpySE526I	ACGT	4 cut(s)	98, 2548, 2840, 2889
Hsp92I	GRCGYC	1 cut(s)	2889
Hsp92II	CATG	9 cut(s)	220, 900, 1184, 1220, 1304, 1475, 1547, 2519, 2641
HspAI	GCGC	3 cut(s)	245, 1982, 2966
KflI	GGGWCCC	1 cut(s)	2401
Ksp22I	TGATCA	1 cut(s)	2707
KspAI	GTTAAC	2 cut(s)	2286, 2409
LmnI	GCTCC	4 cut(s)	16, 93, 165, 2696
MabI	ACCWGGT	1 cut(s)	1165
MaeII	ACGT	4 cut(s)	98, 2548, 2840, 2889
MaeIII	GTNAC	4 cut(s)	1186, 1784, 2176, 2544
MfeI	CAATTG	3 cut(s)	477, 1482, 2220
MflI	RGATCY	6 cut(s)	443, 775, 965, 994, 1231, 1243
MhlI	GDGCHC	3 cut(s)	1019, 1265, 2852
MlyI	GAGTC	2 cut(s)	82, 1882
MmeI	TCCRAC	3 cut(s)	777, 1660, 2017
Mph1103I	ATGCAT	2 cut(s)	6, 1306
MroXI	GAANNNNTTC	2 cut(s)	1332, 2345
MslI	CAYNNNNRTG	2 cut(s)	2517, 2843
MspA1I	CMGCKG	3 cut(s)	874, 2200, 3002
MspI	CCGG	2 cut(s)	14, 962
MspR9I	CCNGG	7 cut(s)	67, 733, 963, 1167, 1520, 1839, 2901
MunI	CAATTG	3 cut(s)	477, 1482, 2220
Mva1269I	GAATGC	4 cut(s)	65, 829, 1334, 2775
MvaI	CCWGG	6 cut(s)	67, 733, 1167, 1520, 1839, 2901
MvnI	CGCG	2 cut(s)	2334, 2968
NciI	CCSGG	1 cut(s)	963
NdeI	CATATG	1 cut(s)	2788
NheI	GCTAGC	1 cut(s)	1220
NlaIII	CATG	9 cut(s)	220, 900, 1184, 1220, 1304, 1475, 1547, 2519, 2641
NlaIV	GGNNCC	6 cut(s)	89, 1264, 1812, 2402, 2403, 2698
NmuCI	GTSAC	2 cut(s)	1186, 1784
NsiI	ATGCAT	2 cut(s)	6, 1306
NspI	RCATGY	2 cut(s)	900, 1547
NspV	TTCGAA	2 cut(s)	107, 327
OliI	CACNNNNGTG	1 cut(s)	2843
PaeR7I	CTCGAG	1 cut(s)	2701
PagI	TCATGA	2 cut(s)	2515, 2637
PasI	CCCWGGG	1 cut(s)	66
PceI	AGGCCT	1 cut(s)	2532
PcsI	WCGNNNNNNNCGW	3 cut(s)	104, 411, 1777
PctI	GAATGC	4 cut(s)	65, 829, 1334, 2775
PdmI	GAANNNNTTC	2 cut(s)	1332, 2345
PfeI	GAWTC	8 cut(s)	238, 1628, 2162, 2276, 2360, 2662, 2834, 2873
PflFI	GACNNNGTC	2 cut(s)	100, 2891
PflMI	CCANNNNNTGG	1 cut(s)	1991
PfoI	TCCNGGA	1 cut(s)	1837
Ple19I	CGATCG	1 cut(s)	24
PleI	GAGTC	2 cut(s)	81, 1882
PpsI	GAGTC	2 cut(s)	81, 1882
Ppu21I	YACGTR	1 cut(s)	2549
PpuMI	RGGWCCY	2 cut(s)	1850, 2401
PshBI	ATTAAT	2 cut(s)	1857, 2984
Psp5II	RGGWCCY	2 cut(s)	1850, 2401
Psp6I	CCWGG	6 cut(s)	65, 731, 1165, 1518, 1837, 2899
PspFI	CCCAGC	1 cut(s)	931
PspGI	CCWGG	6 cut(s)	65, 731, 1165, 1518, 1837, 2899
PspN4I	GGNNCC	6 cut(s)	89, 1264, 1812, 2402, 2403, 2698
PspPI	GGNCC	7 cut(s)	912, 1085, 1841, 1850, 1865, 1931, 2401
PspPPI	RGGWCCY	2 cut(s)	1850, 2401
PspXI	VCTCGAGB	1 cut(s)	2701
PstI	CTGCAG	3 cut(s)	382, 879, 1287
PstNI	CAGNNNCTG	4 cut(s)	37, 938, 2582, 3002
PsuI	RGATCY	6 cut(s)	443, 775, 965, 994, 1231, 1243
PsyI	GACNNNGTC	2 cut(s)	100, 2891
PvuI	CGATCG	1 cut(s)	24
PvuII	CAGCTG	2 cut(s)	874, 3002
RsaI	GTAC	9 cut(s)	227, 1252, 1468, 1582, 1833, 1913, 2127, 2560, 2567
RsaNI	GTAC	9 cut(s)	226, 1251, 1467, 1581, 1832, 1912, 2126, 2559, 2566
RseI	CAYNNNNRTG	2 cut(s)	2517, 2843
SalI	GTCGAC	1 cut(s)	2733
Sau96I	GGNCC	7 cut(s)	912, 1085, 1841, 1850, 1865, 1931, 2401
ScaI	AGTACT	1 cut(s)	1833
SchI	GAGTC	2 cut(s)	82, 1882
ScrFI	CCNGG	7 cut(s)	67, 733, 963, 1167, 1520, 1839, 2901
SduI	GDGCHC	3 cut(s)	1019, 1265, 2852
SexAI	ACCWGGT	1 cut(s)	1165
SfcI	CTRYAG	7 cut(s)	378, 780, 875, 1283, 1845, 2031, 2960
Sfr274I	CTCGAG	1 cut(s)	2701
SfuI	TTCGAA	2 cut(s)	107, 327
SinI	GGWCC	5 cut(s)	1841, 1850, 1865, 1931, 2401
SlaI	CTCGAG	1 cut(s)	2701
SmiMI	CAYNNNNRTG	2 cut(s)	2517, 2843
SmlI	CTYRAG	3 cut(s)	388, 1018, 2701
SmoI	CTYRAG	3 cut(s)	388, 1018, 2701
SpeI	ACTAGT	1 cut(s)	2128
SseBI	AGGCCT	1 cut(s)	2532
SsiI	CCGC	5 cut(s)	223, 1202, 1820, 2198, 2968
SspI	AATATT	3 cut(s)	206, 1555, 2458
StuI	AGGCCT	1 cut(s)	2532
StyD4I	CCNGG	7 cut(s)	65, 731, 961, 1165, 1518, 1837, 2899
StyI	CCWWGG	1 cut(s)	1892
TaiI	ACGT	4 cut(s)	101, 2551, 2843, 2892
TatI	WGTACW	4 cut(s)	1831, 1911, 2125, 2558
TauI	GCSGC	1 cut(s)	2971
TfiI	GAWTC	8 cut(s)	238, 1628, 2162, 2276, 2360, 2662, 2834, 2873
TscAI	CASTG	2 cut(s)	564, 2850
TseFI	GTSAC	2 cut(s)	1186, 1784
Tsp45I	GTSAC	2 cut(s)	1186, 1784
TspGWI	ACGGA	2 cut(s)	1519, 2551
TspRI	CASTG	2 cut(s)	564, 2850
Tth111I	GACNNNGTC	2 cut(s)	100, 2891
Van91I	CCANNNNNTGG	1 cut(s)	1991
VpaK11BI	GGWCC	5 cut(s)	1841, 1850, 1865, 1931, 2401
VspI	ATTAAT	2 cut(s)	1857, 2984
XagI	CCTNNNNNAGG	1 cut(s)	1665
XceI	RCATGY	2 cut(s)	900, 1547
XhoI	CTCGAG	1 cut(s)	2701
XmiI	GTMKAC	3 cut(s)	76, 2734, 2959
XmnI	GAANNNNTTC	2 cut(s)	1332, 2345
ZraI	GACGTC	1 cut(s)	2890
ZrmI	AGTACT	1 cut(s)	1833
Zsp2I	ATGCAT	2 cut(s)	6, 1306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.